Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g011020.3.1
CDS Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT5G02130.1)
Sequence

ATGTTTCGAATCGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCC
GATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTC
AAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAA
AAATCAGACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAG
TCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAGA
GGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACT
TTAGCTAATCCACAGTTTGAAGTTCCCATTGTGACAATTAGACATATGATTGCAGTTGCC
GCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAAGATGATTTTTCATCAGCA
ACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGA
TCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGT
AATGCTGAATCAGCTGAGTCATTCTTTGAAGGAGCTCAAGGTGATAAAGGTTGCTTTGGC
AATGTTGCACTATCTTTTGGTGAATTCCTGCATTGTAAGCGGAATTCCCAGATGGCGAGG
GAGTTATATCAAAGGGCAATGCAGGATGTATCAGAACGTAAAGATTTTACCGACTCACAG
TCCATATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTA
GGACAGCTTGAGGCTCATTTGGGGAATTTTGATGATGCTGAGGAAATACTAACTGCAGCA
CTGAAGAAAGCAGAAGAGTGCTTTGGTAATTATCATCCAAAGGTAGGTATTATTTTGACC
TGCATAGCTCTCATGTATCGACATAAAGCAGCCATGGAGCAGTCAAGCTCGCTTTTGATT
CAAGAGGGACTCTATAGAAGAGCAATTGAAGTGCTCAAAGCTCCACCCTTGGAAGTAGAA
GGTGTTGTAGCGACACGGTCTAGAAGGGATATTCTTGCCCTTGCAAGAGGTGGGTACGCA
GAGACGCTTATCGTGCAACAAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCT
GAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAA
GTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAG

Peptide Sequence

PEP ID

Solyc09g011020.3.1
PEP Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT5G02130.1)
Sequence

MFRIGAKLYRAARIGGSAVSDFRSPSTRFFSINNNVNTGFKTNPVALQMINYALSLARAQ
KSDESYAQAQLVLEQCHSTQSDESAKGLVMLAMSTLFSERGNFSEAIEKLQKIQDLGLST
LANPQFEVPIVTIRHMIAVAASEALAGLYLESYQDDFSSATADMCLQLLETIRLEIGGGG
SDILEARAKALKGLVELVHGNAESAESFFEGAQGDKGCFGNVALSFGEFLHCKRNSQMAR
ELYQRAMQDVSERKDFTDSQSISACNMNLEETLLGATCALGQLEAHLGNFDDAEEILTAA
LKKAEECFGNYHPKVGIILTCIALMYRHKAAMEQSSSLLIQEGLYRRAIEVLKAPPLEVE
GVVATRSRRDILALARGGYAETLIVQQNRKAEGEKLKQWAETAWTSRRLSLAEALESSAK
VSVIDTRISRVL*

Transcript Sequence

Transcript ID

Solyc09g011020.3.1
Transcript Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT5G02130.1)
Sequence

TATTTTTAAAATTTAATAATTAGAGAATAAATGGAGTAGTTCCATCAAATTCAAAGTGAC
TGAAATCGAACCCTAAATCTGATAAACCCTTTGAATTTAGGGTTTTGCAGAATCATTTAC
TATGTTTCGAATCGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTC
CGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTT
CAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCA
AAAATCAGACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCA
GTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAG
AGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAAC
TTTAGCTAATCCACAGTTTGAAGTTCCCATTGTGACAATTAGACATATGATTGCAGTTGC
CGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAAGATGATTTTTCATCAGC
AACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGG
ATCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGG
TAATGCTGAATCAGCTGAGTCATTCTTTGAAGGAGCTCAAGGTGATAAAGGTTGCTTTGG
CAATGTTGCACTATCTTTTGGTGAATTCCTGCATTGTAAGCGGAATTCCCAGATGGCGAG
GGAGTTATATCAAAGGGCAATGCAGGATGTATCAGAACGTAAAGATTTTACCGACTCACA
GTCCATATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCT
AGGACAGCTTGAGGCTCATTTGGGGAATTTTGATGATGCTGAGGAAATACTAACTGCAGC
ACTGAAGAAAGCAGAAGAGTGCTTTGGTAATTATCATCCAAAGGTAGGTATTATTTTGAC
CTGCATAGCTCTCATGTATCGACATAAAGCAGCCATGGAGCAGTCAAGCTCGCTTTTGAT
TCAAGAGGGACTCTATAGAAGAGCAATTGAAGTGCTCAAAGCTCCACCCTTGGAAGTAGA
AGGTGTTGTAGCGACACGGTCTAGAAGGGATATTCTTGCCCTTGCAAGAGGTGGGTACGC
AGAGACGCTTATCGTGCAACAAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGC
TGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAA
AGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACAC
ATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCT
CTAAACAACACAAGAGATTTCGAAATTTTCTTGAATAATGAATGTATTACTGTTGTACAT
TACTGAATTTTGCATGAAGAAATTTAAAGATTCACAACATTTAGAGAGGAATATCAAGGC
CTTTTCCAATTTCTACACCAATCATTTCAAGAATTCCCTTGTTGAAAATCTGAAAAAGTG
CAACACACAAAGATTACGATATAGTAATTAATCAATTAATATTTTCCTTCAAAGGTATAA
AAAAAGATGTATAGTTACCAATTCCACAATAAATGTACCAATAAGACCAATCATACAAGC
TCTAGAGTTCCATATCTCAGCAGTATTAGTAAAACCCAAAAGGGGTTTGCTCAACTTTGG
TACTTCTTTTGGCAACTCCACCTACACAATAAAAGTTTCATTTTACAAAAACATAGTAAA
TATAAATGTGAAAACAAGTTTTTGGTGTTCTTCGAATTTCAAATACAATTTCACGTTATA
TTTGAAAATCTTATAGTCAAACGTTGATTTTCAAATAAAGTGAATTTTCATGGTCTAACG
AATCCTAAGATGTCACCTACCTAGTTTCTTCCAACTCCACCTTACTATAACGGTGAAATC
CAAAATTTCATTAAGGGGATTAAAAATAAAATCTTATGCCAATAGGATTTAACAACTTAT
GATTTATGTGTGTACCCTAAAAGAGTCATTTCCCCTTATTTATATAATAATACTCCTTAC
GTCTTTATTTATGTTGCATAATTCAGATTTTCAGACTAAATTGACTTTTAATCGTAAATT
AGATGAAATTTTTTATGTTTTTTTTTCAAAATATAAAAAATTACAAAGTAGTGTAAGTCT
CAGTAATCATAATTCAAAGGCACATGAAAAATTTACAATCAAACAAAAATGCAACATAAA
TTGAGGTATAATTTGTTAATTATAATGTTAGTATTAACTAATAATAGAATACATACCCCA
GGTGGAACCTTTGCAGCCTGAATGTTGAAGGAGGTCCTTTTGGTAATTTTCAAATTGGGA
TTATTTGGAAGAAATAAATGATGATTTTGAGAATAATTTGGAGAAAGTGTTGTTGAGAGA
AATGAAGATGAGAGTGAAGCCATTGTTACACAAAAAAAATAAAAAATAAAGTAAAGTTGA
AGCAAATTAGCCCATTGTATTCTTGTTTTTGTGTTACCTTATCAACAAATTATTTTGTGG
TCTCCAAAATTCTAATTTCTATGAGTGTGTGGGGGTCCACTCCCACCATAGGTGTACCAC
CTTCACACCTCATATTTTTT