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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g010880.3.1
CDS Infomation

Rhomboid-like protein (AHRD V3.3 *** K4CRB4_SOLLC)
Sequence

ATGGCCGGAGGAGCTCATTCACAACCGGAGATCCAAATCCAGGTCCATTCAAGGAAAGGG
GGTAACTCAGTATACCCAGTAGAGCCAGCTATGACAACAACAGGAGGACCTGCTTTTTAT
AGAGAAATTAAGCATTTCAAGAAATGGTTTCCATGGTTGATACCATCTTTTGTTATAGTC
AATGTAGTGACATTTTTGGTGACCATGTATGTGAATAATTGCCCCAACAACTCTGTTTCT
TGTTATGCTGGATTTTTGGGTAGGTTTTCGTTTCAGCCATTCAGTGAAAATCCTCTTCTT
GGGCCTTCTTCTACCACGCTAGAGAAGATGGGTGCTCTAGATGTGAATAAGGTGGTCCGC
GAACATCAAGGATGGCGTCTTTTTACTTGCATGTGGTTGCATGGTGGTGTTTTTCATTTA
CTGGCCAACATGCTGAGTCTTCTAGTGATTGGCATTCGGCTGGAGCGAGAGTTTGGATTT
GTACGCATTGGTGTGCTCTATATCATCGCTGGACTTGGTGGCAGTTTGTTCTCAGCTCTA
TTTATTAAGTCAAATATATCTGTTGGTGCTTCTGGTGCACTTTTTGGGTTGCTGGGAAGC
ATGCTTTCAGAGCTTATAATCAATTGGACCATATATGCCAATAAGATTGCAGTTTTAGTG
ACCCTTGTGGTTATCATTATTATAAATCTGGCGGTTGGACTTCTCCCACACGTTGACAAC
TTCGCTCATATTGGAGGATTTGTGTCTGGTTTTCTTCTTGGTTTCGTATTTCTGATCCGG
CCCCAGTTTGGCTGGGTGAGCCAGAAATATGCATCCAGAACATATTCAGCATCGGCTAAA
CCAAAATTCAAGATGTATCAAATGGTTCTATGGGTTGTTTCTCTTATTCTTTTGATAATT
GGGTTCACTAGTGGCTTGGTCATGCTTTTCCGCGGAGTAGATTTAAATGATCATTGTTCC
TGGTGCCATTATATGAGTTGTCTACCCACTTCAAGGTGGAGCTGCAACACAGAGCCTGTT
TCCTGTATGTCCGAGCAAACGATTAACCAGCTCACATTGACGTGCTCCAACAGTAACAAG
ACGAGAACCTATCCATTGTCGAATCCAAGTACGTCTAAGATCCAGGGACTCTGTACTCAG
CTTTGCCGTTGA

Peptide Sequence

PEP ID

Solyc09g010880.3.1
PEP Infomation

Rhomboid-like protein (AHRD V3.3 *** K4CRB4_SOLLC)
Sequence

MAGGAHSQPEIQIQVHSRKGGNSVYPVEPAMTTTGGPAFYREIKHFKKWFPWLIPSFVIV
NVVTFLVTMYVNNCPNNSVSCYAGFLGRFSFQPFSENPLLGPSSTTLEKMGALDVNKVVR
EHQGWRLFTCMWLHGGVFHLLANMLSLLVIGIRLEREFGFVRIGVLYIIAGLGGSLFSAL
FIKSNISVGASGALFGLLGSMLSELIINWTIYANKIAVLVTLVVIIIINLAVGLLPHVDN
FAHIGGFVSGFLLGFVFLIRPQFGWVSQKYASRTYSASAKPKFKMYQMVLWVVSLILLII
GFTSGLVMLFRGVDLNDHCSWCHYMSCLPTSRWSCNTEPVSCMSEQTINQLTLTCSNSNK
TRTYPLSNPSTSKIQGLCTQLCR*

Transcript Sequence

Transcript ID

Solyc09g010880.3.1
Transcript Infomation

Rhomboid-like protein (AHRD V3.3 *** K4CRB4_SOLLC)
Sequence

ACGTAATTCGTATTTACTTGAAATTCTAATACGAACTTTGAGCACGATATTATTCAAATA
AATAACTTTTAACTATTTATAGTAGAAGGGAAAAAAAATTAATTTGCCCAAAAAAAACAG
AAGAAAAAATAAAGGCTACAAAAGGTATTGAGTGTATGAAGTTATCAGCTCGTCGGCAAA
GCTAATCATCTTCGTATGAATCAATCAATTTGACTTTATCCTCTCTTCAAAGCCACGTTA
ACTCCTTTTTCTTCTCTACCCATTGTGTACAATCGGAATTTAAACTTCCCGGCATCAATT
TCCAGCATTCTTGATTTTCCGGCGAGATGGCCGGAGGAGCTCATTCACAACCGGAGATCC
AAATCCAGGTCCATTCAAGGAAAGGGGGTAACTCAGTATACCCAGTAGAGCCAGCTATGA
CAACAACAGGAGGACCTGCTTTTTATAGAGAAATTAAGCATTTCAAGAAATGGTTTCCAT
GGTTGATACCATCTTTTGTTATAGTCAATGTAGTGACATTTTTGGTGACCATGTATGTGA
ATAATTGCCCCAACAACTCTGTTTCTTGTTATGCTGGATTTTTGGGTAGGTTTTCGTTTC
AGCCATTCAGTGAAAATCCTCTTCTTGGGCCTTCTTCTACCACGCTAGAGAAGATGGGTG
CTCTAGATGTGAATAAGGTGGTCCGCGAACATCAAGGATGGCGTCTTTTTACTTGCATGT
GGTTGCATGGTGGTGTTTTTCATTTACTGGCCAACATGCTGAGTCTTCTAGTGATTGGCA
TTCGGCTGGAGCGAGAGTTTGGATTTGTACGCATTGGTGTGCTCTATATCATCGCTGGAC
TTGGTGGCAGTTTGTTCTCAGCTCTATTTATTAAGTCAAATATATCTGTTGGTGCTTCTG
GTGCACTTTTTGGGTTGCTGGGAAGCATGCTTTCAGAGCTTATAATCAATTGGACCATAT
ATGCCAATAAGATTGCAGTTTTAGTGACCCTTGTGGTTATCATTATTATAAATCTGGCGG
TTGGACTTCTCCCACACGTTGACAACTTCGCTCATATTGGAGGATTTGTGTCTGGTTTTC
TTCTTGGTTTCGTATTTCTGATCCGGCCCCAGTTTGGCTGGGTGAGCCAGAAATATGCAT
CCAGAACATATTCAGCATCGGCTAAACCAAAATTCAAGATGTATCAAATGGTTCTATGGG
TTGTTTCTCTTATTCTTTTGATAATTGGGTTCACTAGTGGCTTGGTCATGCTTTTCCGCG
GAGTAGATTTAAATGATCATTGTTCCTGGTGCCATTATATGAGTTGTCTACCCACTTCAA
GGTGGAGCTGCAACACAGAGCCTGTTTCCTGTATGTCCGAGCAAACGATTAACCAGCTCA
CATTGACGTGCTCCAACAGTAACAAGACGAGAACCTATCCATTGTCGAATCCAAGTACGT
CTAAGATCCAGGGACTCTGTACTCAGCTTTGCCGTTGAATAGCCATCACACTTGCAATTT
CTTTGTAAATTGATGTCATTTCAGAAATCTTACATAAACATTTAATCCTACTGTTATTTT
TGTTTTTGTATTGGACAACATTCTTATATAGTATAAAAAAGTTCACATTGAAAGCTTTCT
AATGTC