Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g008040.3.1
CDS Infomation

Sigma factor (AHRD V3.3 *** A0A0G2STR6_9ROSI)
Sequence

ATGGAGGCTGCTGGAAGAAACCTTCTTTCTTCACCACCAACTTTTTCTCAGAAAACCCAA
CTCAGGAATTGTTCTTCTTCAGTTCTGATGCTTCATGAGCATGCTGCTCCTGTGCTTTCT
TCAGTGCCCCATACTTATTTGGGTCGATATGTTCCTGCATCAGCTATCGGTCCGGAGCAG
CATTTTGAGAATCGGCTGCAATTGCACCTAGTAAAGGAAGAGAAAACATCCCTGGCAACA
ATAGATAGGAGGCTTGTGGAAGCTGCATCCTCAGAATTGGAAGAGAATGATGCTGTTGAT
TCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATAT
TCGTTTCCCCCGTATTATCTGAAGGGAAAAGGACCATTATCTCCAAATAAGGAACCTCTT
CACAGTAAGGGAGATAAATTAATGAACTTTGAACCACACAGTGTGGTTGCTCTTGCCAGA
AAAGCTTTGTTGGCATCAAAAGAGGCAGCTTTATTAGCTGAAGACTCCAAATTACTTGAT
GATTCTCATTTTCCAAATTTCCTATCCACGCATTTGGTTGATGATAAACTGAAAGAGCAA
CGTACAGTAAGATCAACACGTTTTATAGAGAGGCAGTCTAGAAAAAGGGGAGCTCCAAAG
CCAATACAAGAAGTTCAGGAGACAAATAATCGTTCAGGCAGGCCAGATGTGCGGAGAAAA
GTGAACGAATCTATTGATCTAAATGATCCTCTTCGAATGTTCCTATGGGGTCCCGAAACT
AAACAACTCTTAACCGCCAAAGAGGAGTCTGAATTGATTGTCAAGATACAGATCTCCATG
AAATTACAAGAAGTAAAGCATCAGCTTCAGATTCAGTTTGCTCGTGAACCAACATCGCTT
GAGTGGGCTGAAGCTGCAGGGATTACTTCTCGAGAATTGAAATCACAACTTCTTTCCGGC
AAGAGCAGCCGTGAGAAATTAATCAATGCCAATTTGCGAATGGTGGTTCATATTGCTAAG
CAATATCAAGGACGTGGTCTCAACCTTCAGGATCTATTGCAGGAGGGAAGCATGGGACTT
ATGAAAAGTGTCGAGAAGTTCAAACCTCAAGCTGGTTGTCGATTTCCTACCTATGCATAC
TGGTGGATAAGGCAATCAGTTAGGAAGGCCATATTTCAACACTCTAGGACAATCCGTTTG
CCCGAAAATGTGTACGCGCTTCTGTCTAAAGTAAAAGACGCCAAAAGAGAATGCATTCGA
CAAGGCAATCGTCATCCAACCAAAGAAGACATCGCATCATGTGCTGGAATGAGTGTGGAA
AGGTTGCAGAATTTGCTTTCAAATGTTAGAACACCACTTTCAATGCAACAGTCAGTGTGG
TCAGATCAAGATACTACTTTCCAGGAAATTACTGCTGACAATGCAATTGAAGCACCAGAA
CTGAGTGTATCAAAACAACTTATGAGGCGTCACATACGCGGCCTCCTAAATGTCCTGAGT
CCAAAGGAAAGGAAAATAATCCGACTTAGATTTGGCATTGGAGATGGCAAACCAAAGTCT
CTATCCGAAATAGGCGCTGTTTTTGGACTGTCAAAGGAACGAGTACGACAACTAGAGACC
CGAGCACTATACAAGCTAAAGCAGAATCTTAACAAGCATGGCCTCGATGCATATTCCGAT
TTGCTCTTTTAA

Peptide Sequence

PEP ID

Solyc09g008040.3.1
PEP Infomation

Sigma factor (AHRD V3.3 *** A0A0G2STR6_9ROSI)
Sequence

MEAAGRNLLSSPPTFSQKTQLRNCSSSVLMLHEHAAPVLSSVPHTYLGRYVPASAIGPEQ
HFENRLQLHLVKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPSY
SFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAEDSKLLD
DSHFPNFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRK
VNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSL
EWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGL
MKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKRECIR
QGNRHPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPE
LSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGAVFGLSKERVRQLET
RALYKLKQNLNKHGLDAYSDLLF*

Transcript Sequence

Transcript ID

Solyc09g008040.3.1
Transcript Infomation

Sigma factor (AHRD V3.3 *** A0A0G2STR6_9ROSI)
Sequence

CAAAAGCCATCACTTCCATTCATCTTCAATCTTCAAATGAAGCTTTTTTAATTCAAGAAA
ATACTCATGCTAGCACTAAAACCCCTCTTAATTCTGAAAAAAGATATCTTTTTTACACCC
CACATACCAGAAAAATAGTGAAGAGTTTCACAAGATAGCTTAGCTTAAAGCTATGGAGGC
TGCTGGAAGAAACCTTCTTTCTTCACCACCAACTTTTTCTCAGAAAACCCAACTCAGGAA
TTGTTCTTCTTCAGTTCTGATGCTTCATGAGCATGCTGCTCCTGTGCTTTCTTCAGTGCC
CCATACTTATTTGGGTCGATATGTTCCTGCATCAGCTATCGGTCCGGAGCAGCATTTTGA
GAATCGGCTGCAATTGCACCTAGTAAAGGAAGAGAAAACATCCCTGGCAACAATAGATAG
GAGGCTTGTGGAAGCTGCATCCTCAGAATTGGAAGAGAATGATGCTGTTGATTCAGAGCA
AAATATAAATGCTTTGCAAGTGCAGCTACTTCATTGGCCTGGTCCATCATATTCGTTTCC
CCCGTATTATCTGAAGGGAAAAGGACCATTATCTCCAAATAAGGAACCTCTTCACAGTAA
GGGAGATAAATTAATGAACTTTGAACCACACAGTGTGGTTGCTCTTGCCAGAAAAGCTTT
GTTGGCATCAAAAGAGGCAGCTTTATTAGCTGAAGACTCCAAATTACTTGATGATTCTCA
TTTTCCAAATTTCCTATCCACGCATTTGGTTGATGATAAACTGAAAGAGCAACGTACAGT
AAGATCAACACGTTTTATAGAGAGGCAGTCTAGAAAAAGGGGAGCTCCAAAGCCAATACA
AGAAGTTCAGGAGACAAATAATCGTTCAGGCAGGCCAGATGTGCGGAGAAAAGTGAACGA
ATCTATTGATCTAAATGATCCTCTTCGAATGTTCCTATGGGGTCCCGAAACTAAACAACT
CTTAACCGCCAAAGAGGAGTCTGAATTGATTGTCAAGATACAGATCTCCATGAAATTACA
AGAAGTAAAGCATCAGCTTCAGATTCAGTTTGCTCGTGAACCAACATCGCTTGAGTGGGC
TGAAGCTGCAGGGATTACTTCTCGAGAATTGAAATCACAACTTCTTTCCGGCAAGAGCAG
CCGTGAGAAATTAATCAATGCCAATTTGCGAATGGTGGTTCATATTGCTAAGCAATATCA
AGGACGTGGTCTCAACCTTCAGGATCTATTGCAGGAGGGAAGCATGGGACTTATGAAAAG
TGTCGAGAAGTTCAAACCTCAAGCTGGTTGTCGATTTCCTACCTATGCATACTGGTGGAT
AAGGCAATCAGTTAGGAAGGCCATATTTCAACACTCTAGGACAATCCGTTTGCCCGAAAA
TGTGTACGCGCTTCTGTCTAAAGTAAAAGACGCCAAAAGAGAATGCATTCGACAAGGCAA
TCGTCATCCAACCAAAGAAGACATCGCATCATGTGCTGGAATGAGTGTGGAAAGGTTGCA
GAATTTGCTTTCAAATGTTAGAACACCACTTTCAATGCAACAGTCAGTGTGGTCAGATCA
AGATACTACTTTCCAGGAAATTACTGCTGACAATGCAATTGAAGCACCAGAACTGAGTGT
ATCAAAACAACTTATGAGGCGTCACATACGCGGCCTCCTAAATGTCCTGAGTCCAAAGGA
AAGGAAAATAATCCGACTTAGATTTGGCATTGGAGATGGCAAACCAAAGTCTCTATCCGA
AATAGGCGCTGTTTTTGGACTGTCAAAGGAACGAGTACGACAACTAGAGACCCGAGCACT
ATACAAGCTAAAGCAGAATCTTAACAAGCATGGCCTCGATGCATATTCCGATTTGCTCTT
TTAAATCACAGTCTCTTCAATTTACATAAAACGACTCGAGTTGTTACTGTGGCTGATGTA
GCAGATGTTACTTTGAAATCAACAGTAGATACAAGTTGCTCACATCCTTGTAAGTATGGA
GCAAACATTCAAATTCCAGCGGAGACAAAAACACCAGGTGATTCTTCCCATCT