Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g007200.3.1
CDS Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** U5GAL9_POPTR)
Sequence

ATGAGAGAAGCTTTGGTGATACTTCCATCTTCGTCGATTACTCTCCCGCCCAACTCCTCC
CCTACTCCGCCGCCGCACCACCGTCACTACCGCCGCACCACCGCCAAGCCCAAACGAAAG
CCCACTCATTCTCCGTCTCATTTCACTTCATCCATCACTACTCCTCAATCTCCGCTTCTA
TCCTCATTGCGATGGGATTCCGCTTCCGCCTCAGGTAGCTGTAATGGTCTTAAATACTAT
GCTGAGTTGGCGTCTAAGCTAGCGCAGGATGGGAGGTTTGATGATTCGTTGATGATCGCG
GAGAGTGTCGTGGTTTCTGGAGTGAATGCGGAGGAATTCACAGCGTTGTTGAATGTGAAG
CTTGTTTCCGGTGGGATTGTTCGATTGCTTGAGGAAAGGAAGGTAGGGAGTGTTGTTGAG
CTTCTGAATGGTGCTCAGCAGCTTGGAATTGATCCTTCGAAGCTTCTTGATGAAGATTCA
ATAAATGCCCTTTCGCGAGAGTGTAGACGGACTATGCAATGCAGCGAAATTGAGGAAGTT
GTGAGCTTGATGGAAACACTTAGAGGGTGTGGTATGCCAATTAAGGATTTGGTGAAGCCA
TCTGAGATTCTAAGACTTTGTGTCAGCCAAAGAAAGCCAAATGCAGCAGTAAGAGAAAAC
TGTGATTACCTGCCACTTCCTTACTGTGCAAGTTCAATCATGACTCTCTGCAGGTATGCA
CATATCTTTCCACACGTGGACATTATGTTCTGTACCATAATTCTTGAATTTGGGAAGAAA
GGCGATTTGGCGTCTGCTCTAACTGTCTTTGAAGCATCCAAGCAGAACCAGGACACCCCG
AATTTGTATATTTACCGCACAGCAATAGATGTTTGTGGTCTTTGTGGTGACTACTTGAAG
TCTAGGTCCATATATGAGGGGTTGATAGCTAGCAAGTTTACACCAAACATTTATGTCTTC
AACAGCCTCATGAATGTAAATGCATGTGACTTGAGTTACACCTTGGACATATACAAGCAA
ATGCAAAAACTAGGTGTTCCGGCTGACTTGACATCTTACAATATCCTTCTGAAGTCATGT
TGTCTTGCTACAAGAGTTGATCTGGCCAAAGAAATTTATGGGGAGCTAAAGCATTTAGAA
ATGGCAGGAGCATTGAAATTGGATGTCTTCACGTACAGCACTTTAATTAAGGTATTTGCA
GATGCAAAAATGTGGCAGATGGCACTTGAAATAAAAAAAGATATGCTATCGGCTGGTGTC
ACTCCCAACATTGTCACTTGGTCTTCATTGATCAGCGCCTGTGCCAATGCAGGCGTGGTA
GACCAAGCTATTCAGTTATTTGAAGAGATGCTTCAGGCTGGTTGCGAACCTAATTCACAA
TGTTACAACATTCTTCTTCATGCGTGTGTTGAAGCCTGCCAATATGATAGGGCCTTTCGG
TTATTCAGGTCCTGGAAGGAAAATGCACTGCAGAAGGACAAGTGTGAAGATTACGGTGGC
AAGACGGACAACAATATTGATCTCTCCCCCACACTTGTGGTTTCTGCTAGTATACCCACC
CGCACTTCTGCTTCCTCTCACAGACATATCTCTACGAGGGTTCCATTTATCCCTACTACT
TCTACCTATAATATTCTGATGAAGGCCTGTGGGAGTGATTACTACCGAGCGAAAGCTTTG
ATGGAAGAGATGAAGGAAGTAGGTCTTTCTCCTAACCATATAACCTGGACTATTTTGATT
GACATCTGTGGAGGCTCAGGAAATGTAGAGGGTGCTCTGCAGATTTTGAGAGTCATGCGA
GAGGCTGGTATTCAACCTGACGTGGTAACCTATACAACAATTATCAAGGTTTGCGTGGAA
AATAAAGATTTCAAGAGTGCATTTTCATTATTTGCAGCAATGAAGAGATATCAGATAAAA
CCAAATATGGTCACATATAATACACTTCTTAGAGCTCGTAGCCGATATGGATCTTTGCAG
GAGGTACAACAATGCTTAGCTATATATCAAGATATGCGGAAAGCAGGGTACAAACCCAAC
GATTACTATCTCAAGCAATTAATTGAGCAGTGGTGTGAAGGCGTAATACAGAATGCCAAT
CAGAGGAAATACAACTTCAGCACTCGTAATAGAACTGATTTAGGGCCTCAAAGTATGATT
CTGGAGAAAGTTGCAGAACACTTGCAGAAGGACAGTGCAAACAGCATCTCCATTAATCTC
CGAGGGCTTACTAAGGTTGAAGCTAGGATTGTGGTTCTTGCGGTTTTGAGAATGATCAGA
GAGAAGTACACTGCAGGAGATTCAATCAAAGATGATGTGCAAATCTTTCTAGGAGTCAAA
GAAGTAGGTATACGTGCTGTCAAACAAGAAAGTGTCGTTAAGGAAGCAATAATACAACTA
TTGCAACATGATTTGGGACTTGAGGTAATTTCAGCAGCATCAACAATTGGAAATGGGATA
AACCATCCAGACAACAAGCATTCAAACATGGAAGAAAATGCAGAAAGAGTCATTCTACGA
CCAAGCGTGTACTCTCCAACAAGGAAACCAGTGGTTTTGCAAAAAATGAGGATAACTAAG
GAGTCACTGCAATCCTGGCTAACAAGAAGGTTAGATGCTTCTGTAGTGCAATGA

Peptide Sequence

PEP ID

Solyc09g007200.3.1
PEP Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** U5GAL9_POPTR)
Sequence

MREALVILPSSSITLPPNSSPTPPPHHRHYRRTTAKPKRKPTHSPSHFTSSITTPQSPLL
SSLRWDSASASGSCNGLKYYAELASKLAQDGRFDDSLMIAESVVVSGVNAEEFTALLNVK
LVSGGIVRLLEERKVGSVVELLNGAQQLGIDPSKLLDEDSINALSRECRRTMQCSEIEEV
VSLMETLRGCGMPIKDLVKPSEILRLCVSQRKPNAAVRENCDYLPLPYCASSIMTLCRYA
HIFPHVDIMFCTIILEFGKKGDLASALTVFEASKQNQDTPNLYIYRTAIDVCGLCGDYLK
SRSIYEGLIASKFTPNIYVFNSLMNVNACDLSYTLDIYKQMQKLGVPADLTSYNILLKSC
CLATRVDLAKEIYGELKHLEMAGALKLDVFTYSTLIKVFADAKMWQMALEIKKDMLSAGV
TPNIVTWSSLISACANAGVVDQAIQLFEEMLQAGCEPNSQCYNILLHACVEACQYDRAFR
LFRSWKENALQKDKCEDYGGKTDNNIDLSPTLVVSASIPTRTSASSHRHISTRVPFIPTT
STYNILMKACGSDYYRAKALMEEMKEVGLSPNHITWTILIDICGGSGNVEGALQILRVMR
EAGIQPDVVTYTTIIKVCVENKDFKSAFSLFAAMKRYQIKPNMVTYNTLLRARSRYGSLQ
EVQQCLAIYQDMRKAGYKPNDYYLKQLIEQWCEGVIQNANQRKYNFSTRNRTDLGPQSMI
LEKVAEHLQKDSANSISINLRGLTKVEARIVVLAVLRMIREKYTAGDSIKDDVQIFLGVK
EVGIRAVKQESVVKEAIIQLLQHDLGLEVISAASTIGNGINHPDNKHSNMEENAERVILR
PSVYSPTRKPVVLQKMRITKESLQSWLTRRLDASVVQ*

Transcript Sequence

Transcript ID

Solyc09g007200.3.1
Transcript Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** U5GAL9_POPTR)
Sequence

CGGTTGGCTAAGAAGTAATGAGAGAAGCTTTGGTGATACTTCCATCTTCGTCGATTACTC
TCCCGCCCAACTCCTCCCCTACTCCGCCGCCGCACCACCGTCACTACCGCCGCACCACCG
CCAAGCCCAAACGAAAGCCCACTCATTCTCCGTCTCATTTCACTTCATCCATCACTACTC
CTCAATCTCCGCTTCTATCCTCATTGCGATGGGATTCCGCTTCCGCCTCAGGTAGCTGTA
ATGGTCTTAAATACTATGCTGAGTTGGCGTCTAAGCTAGCGCAGGATGGGAGGTTTGATG
ATTCGTTGATGATCGCGGAGAGTGTCGTGGTTTCTGGAGTGAATGCGGAGGAATTCACAG
CGTTGTTGAATGTGAAGCTTGTTTCCGGTGGGATTGTTCGATTGCTTGAGGAAAGGAAGG
TAGGGAGTGTTGTTGAGCTTCTGAATGGTGCTCAGCAGCTTGGAATTGATCCTTCGAAGC
TTCTTGATGAAGATTCAATAAATGCCCTTTCGCGAGAGTGTAGACGGACTATGCAATGCA
GCGAAATTGAGGAAGTTGTGAGCTTGATGGAAACACTTAGAGGGTGTGGTATGCCAATTA
AGGATTTGGTGAAGCCATCTGAGATTCTAAGACTTTGTGTCAGCCAAAGAAAGCCAAATG
CAGCAGTAAGAGAAAACTGTGATTACCTGCCACTTCCTTACTGTGCAAGTTCAATCATGA
CTCTCTGCAGGTATGCACATATCTTTCCACACGTGGACATTATGTTCTGTACCATAATTC
TTGAATTTGGGAAGAAAGGCGATTTGGCGTCTGCTCTAACTGTCTTTGAAGCATCCAAGC
AGAACCAGGACACCCCGAATTTGTATATTTACCGCACAGCAATAGATGTTTGTGGTCTTT
GTGGTGACTACTTGAAGTCTAGGTCCATATATGAGGGGTTGATAGCTAGCAAGTTTACAC
CAAACATTTATGTCTTCAACAGCCTCATGAATGTAAATGCATGTGACTTGAGTTACACCT
TGGACATATACAAGCAAATGCAAAAACTAGGTGTTCCGGCTGACTTGACATCTTACAATA
TCCTTCTGAAGTCATGTTGTCTTGCTACAAGAGTTGATCTGGCCAAAGAAATTTATGGGG
AGCTAAAGCATTTAGAAATGGCAGGAGCATTGAAATTGGATGTCTTCACGTACAGCACTT
TAATTAAGGTATTTGCAGATGCAAAAATGTGGCAGATGGCACTTGAAATAAAAAAAGATA
TGCTATCGGCTGGTGTCACTCCCAACATTGTCACTTGGTCTTCATTGATCAGCGCCTGTG
CCAATGCAGGCGTGGTAGACCAAGCTATTCAGTTATTTGAAGAGATGCTTCAGGCTGGTT
GCGAACCTAATTCACAATGTTACAACATTCTTCTTCATGCGTGTGTTGAAGCCTGCCAAT
ATGATAGGGCCTTTCGGTTATTCAGGTCCTGGAAGGAAAATGCACTGCAGAAGGACAAGT
GTGAAGATTACGGTGGCAAGACGGACAACAATATTGATCTCTCCCCCACACTTGTGGTTT
CTGCTAGTATACCCACCCGCACTTCTGCTTCCTCTCACAGACATATCTCTACGAGGGTTC
CATTTATCCCTACTACTTCTACCTATAATATTCTGATGAAGGCCTGTGGGAGTGATTACT
ACCGAGCGAAAGCTTTGATGGAAGAGATGAAGGAAGTAGGTCTTTCTCCTAACCATATAA
CCTGGACTATTTTGATTGACATCTGTGGAGGCTCAGGAAATGTAGAGGGTGCTCTGCAGA
TTTTGAGAGTCATGCGAGAGGCTGGTATTCAACCTGACGTGGTAACCTATACAACAATTA
TCAAGGTTTGCGTGGAAAATAAAGATTTCAAGAGTGCATTTTCATTATTTGCAGCAATGA
AGAGATATCAGATAAAACCAAATATGGTCACATATAATACACTTCTTAGAGCTCGTAGCC
GATATGGATCTTTGCAGGAGGTACAACAATGCTTAGCTATATATCAAGATATGCGGAAAG
CAGGGTACAAACCCAACGATTACTATCTCAAGCAATTAATTGAGCAGTGGTGTGAAGGCG
TAATACAGAATGCCAATCAGAGGAAATACAACTTCAGCACTCGTAATAGAACTGATTTAG
GGCCTCAAAGTATGATTCTGGAGAAAGTTGCAGAACACTTGCAGAAGGACAGTGCAAACA
GCATCTCCATTAATCTCCGAGGGCTTACTAAGGTTGAAGCTAGGATTGTGGTTCTTGCGG
TTTTGAGAATGATCAGAGAGAAGTACACTGCAGGAGATTCAATCAAAGATGATGTGCAAA
TCTTTCTAGGAGTCAAAGAAGTAGGTATACGTGCTGTCAAACAAGAAAGTGTCGTTAAGG
AAGCAATAATACAACTATTGCAACATGATTTGGGACTTGAGGTAATTTCAGCAGCATCAA
CAATTGGAAATGGGATAAACCATCCAGACAACAAGCATTCAAACATGGAAGAAAATGCAG
AAAGAGTCATTCTACGACCAAGCGTGTACTCTCCAACAAGGAAACCAGTGGTTTTGCAAA
AAATGAGGATAACTAAGGAGTCACTGCAATCCTGGCTAACAAGAAGGTTAGATGCTTCTG
TAGTGCAATGATATACGAAACATGATATGTATAGATTTATACGAACTCTTTCTTTTCGTA
GAGTTCTTTCATCCCTTTAACAGCCGAATAAACACTGTATATTCAATGATATACCACATG
CTAAAAACTTCACATTTTACCATCAAATGTAAACAAAAGTAACAAAAGAAAATGATGTGT
TCTTATTCTCGCACAATATATGTAGCTGCTTCATAACATTCCAATATTCTTGCATCATCG
TGGATCAAAGAAAGCATCCTATCACAACTACACAACGGA