Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc09g005630.3.1
CDS Infomation

trichome birefringence-like protein (DUF828) (AHRD V3.3 *** AT5G01360.1)
Sequence

ATGGGATGGGCAAAATATGCCAGAGGAAAGCTATCTTTGCCTGTAATAACAGGAATTTTC
TGTGCACTAACATTCATTGTTTTATTGTACACTGAAAGGATCACTACTTCTTCTTCTGGT
TTCCATTTTGGGATCAAAACTTGTCCGAGACGAAATGCTGCAAAGTTAAAAAAACATCAT
ACAGGTGTTATTAGAGAGTTGAAGAGCAGTCCACTAGACAATCCAACAGATGATAGGTTC
GTGTTTGATCCCGAGGAATGCAGCCTCAATAACGGGAAATGGGTGTTTAATACTACGATT
AAGCCACTATACACAGATAGAACTTGTCCATATATTGACAGACAATATTCTTGTACTAAG
AATGGACGAGACGATTCAGATTATCTTCACTGGGAATGGCGGCCTGATGACTGCATCTTG
CCAAGGTTTGATCCGACGATTGCCCTTAGAAAACTCCAAGGGAAGAGGATAATGTTTGTA
GGAGACTCAATACAGAGAAATATGTGGGAATCTTTTGTGTGTTTGGTTCAATCTGTGATT
CCAGAAGGCGAAAAGTCTATGAAACTAGGACAGGTTTATTCAGTCTTTAAAGCTAAGGAA
TACAATGCCAGCATTGAATTCTACTGGGCACCATTCTTGGTTGAGTCAAACACAGATATT
CATATAAAAGCCGATTCAAAACAGAGAATCATCAAAGTGGATTCTATCACCGAGCGTGCC
AAACAGTGGTTAGGAGTAGATTACCTTGTTTTCAATACTTATGTTTGGTGGATGAGTGGC
CTTAAAGCCAAAGCATTATGGGGAGAGTTTGCAAATGGCGAAGAGGGATATGAAGAATTC
GATACTCCTATTCCTTACAAGCTAGCATTGAGGACATGGGCAAATTGGATTGATTCAACC
ATCGATACTAATAAAACAAAGGTGTTCTTTACCACTATGTCACCTACGCACCAAAGAAAT
GAAGATTGGGGGAATATGAACGGTACGAGGTGTTTCAATGAGACAAGACCTGTGATGAAG
AAGGGACACTGGGGAGTTGGTTCAAACAAAGATTTAATGAAGGCAGTAGTTGATGTAATA
GGAAGGATGAAAGTTGCTGTTACTGTTCTTAACATAACACAATTATCTGAGTACAGAATT
GATGGACATGCTTCGGTTTACGGTGAATTAGGAGGCAAATTGTTGACTGATAAACAGAAA
GCAGAGCCTTCACATTTTGCAGATTGTATACATTGGTGTTTGCCTGGAGTTCCAGATACT
TGGAATAGAATGCTTTATGCATATTTGTAG

Peptide Sequence

PEP ID

Solyc09g005630.3.1
PEP Infomation

trichome birefringence-like protein (DUF828) (AHRD V3.3 *** AT5G01360.1)
Sequence

MGWAKYARGKLSLPVITGIFCALTFIVLLYTERITTSSSGFHFGIKTCPRRNAAKLKKHH
TGVIRELKSSPLDNPTDDRFVFDPEECSLNNGKWVFNTTIKPLYTDRTCPYIDRQYSCTK
NGRDDSDYLHWEWRPDDCILPRFDPTIALRKLQGKRIMFVGDSIQRNMWESFVCLVQSVI
PEGEKSMKLGQVYSVFKAKEYNASIEFYWAPFLVESNTDIHIKADSKQRIIKVDSITERA
KQWLGVDYLVFNTYVWWMSGLKAKALWGEFANGEEGYEEFDTPIPYKLALRTWANWIDST
IDTNKTKVFFTTMSPTHQRNEDWGNMNGTRCFNETRPVMKKGHWGVGSNKDLMKAVVDVI
GRMKVAVTVLNITQLSEYRIDGHASVYGELGGKLLTDKQKAEPSHFADCIHWCLPGVPDT
WNRMLYAYL*

Transcript Sequence

Transcript ID

Solyc09g005630.3.1
Transcript Infomation

trichome birefringence-like protein (DUF828) (AHRD V3.3 *** AT5G01360.1)
Sequence

ATTAGTTACAACAATATTTTTATTGCACACATGTCTCATAAGAAAGGTTAATATTTTGGA
GCCTTTTGCCAACTTTCTAATAAATTATAATGTCCAACCATACATGACTTAAACTTTACT
CCTACTCAAGAATCTATTAAAACAAAAAGCCACCAAAAACTTATTTCATGTCAGTCTTCA
TCATTCTGGTGAACTTACATTAAGCATTATTTCATCATGGGATGGGCAAAATATGCCAGA
GGAAAGCTATCTTTGCCTGTAATAACAGGAATTTTCTGTGCACTAACATTCATTGTTTTA
TTGTACACTGAAAGGATCACTACTTCTTCTTCTGGTTTCCATTTTGGGATCAAAACTTGT
CCGAGACGAAATGCTGCAAAGTTAAAAAAACATCATACAGGTGTTATTAGAGAGTTGAAG
AGCAGTCCACTAGACAATCCAACAGATGATAGGTTCGTGTTTGATCCCGAGGAATGCAGC
CTCAATAACGGGAAATGGGTGTTTAATACTACGATTAAGCCACTATACACAGATAGAACT
TGTCCATATATTGACAGACAATATTCTTGTACTAAGAATGGACGAGACGATTCAGATTAT
CTTCACTGGGAATGGCGGCCTGATGACTGCATCTTGCCAAGGTTTGATCCGACGATTGCC
CTTAGAAAACTCCAAGGGAAGAGGATAATGTTTGTAGGAGACTCAATACAGAGAAATATG
TGGGAATCTTTTGTGTGTTTGGTTCAATCTGTGATTCCAGAAGGCGAAAAGTCTATGAAA
CTAGGACAGGTTTATTCAGTCTTTAAAGCTAAGGAATACAATGCCAGCATTGAATTCTAC
TGGGCACCATTCTTGGTTGAGTCAAACACAGATATTCATATAAAAGCCGATTCAAAACAG
AGAATCATCAAAGTGGATTCTATCACCGAGCGTGCCAAACAGTGGTTAGGAGTAGATTAC
CTTGTTTTCAATACTTATGTTTGGTGGATGAGTGGCCTTAAAGCCAAAGCATTATGGGGA
GAGTTTGCAAATGGCGAAGAGGGATATGAAGAATTCGATACTCCTATTCCTTACAAGCTA
GCATTGAGGACATGGGCAAATTGGATTGATTCAACCATCGATACTAATAAAACAAAGGTG
TTCTTTACCACTATGTCACCTACGCACCAAAGAAATGAAGATTGGGGGAATATGAACGGT
ACGAGGTGTTTCAATGAGACAAGACCTGTGATGAAGAAGGGACACTGGGGAGTTGGTTCA
AACAAAGATTTAATGAAGGCAGTAGTTGATGTAATAGGAAGGATGAAAGTTGCTGTTACT
GTTCTTAACATAACACAATTATCTGAGTACAGAATTGATGGACATGCTTCGGTTTACGGT
GAATTAGGAGGCAAATTGTTGACTGATAAACAGAAAGCAGAGCCTTCACATTTTGCAGAT
TGTATACATTGGTGTTTGCCTGGAGTTCCAGATACTTGGAATAGAATGCTTTATGCATAT
TTGTAGCAAAAAACAACACTAATGAGAGAACAAGAAAAAAAGAATGTAAACACTCTCATG
TTAGAAAAAAACATACTTTGTTTTTTGTTTGCAAAATTGTATGAATTTCTTGTAAAGTAC
ATTGAATCAATATGGCAAAGTAAATGAAAGTTGCCTACAAAGTTGTTGAAACTCAAGCAC
ATCAAATTGTATAGAAAGTAATGATTTTTTATGATCAAACGAGTCCTTAATCAAAGTTTT
ACAATTGAATAAATAAAGAACAGAATCACAATCAATACTTTCTCAT