Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g082960.3.1
CDS Infomation

HIT zinc finger protein (AHRD V3.3 *** A0A072VFL0_MEDTR)
Sequence

ATGGCCGACGAAATTATAACATCGGAGGGAGTTTCAAGTTCGTCTGAGCTGAACTCGTCG
TCTCGTATAATATGTCGGGTTTGTCAAAAGCAATTTTCGCAGTATACCTGCCCTCGATGT
AATACCCGTTATTGCTCTCTGCCTTGTTACAAGTCTCATAGTCTTCGTTGCACCGAATCC
TTTATGAGAGAGAATGTCATGGAGGAACTACAGCATTTGCAACCAAATGATGGAAGTAAG
CAGAAAATGCTAGACATACTTAAACGATTCCACTCAGAAGATGAAGCAGACATCATGGAT
GAAGATGATTCCCCGTTGTCTGAGGAAACAATTCAAAAAGTTCTATCTGGAAACCAGATA
AGTTTTGAAGATTTATCTGCTGAAGAAAAGAAACATTTCCAAAGGGCTGTTGCCTCAGGT
GAGTTGAGCAAATTGATTAAGCCCTGGGAGCCATGGTGGTCGAAGCCTTCTGCCAAGTAC
ATATCTCTTGGTCAGGATGGAACTCAACTGGTCCAGCCGCTTGTGAAGGAGGATACAGCT
GTGTCTTCGGAAGACAGAATAGGAAGTGACCCTTTGCATGACATTCCACTTGGCCCTGAC
TCTCCATTACCCTCGGTTAGAAAGCTCAGTGCAGCTGGGCCATCCCCTTTACTGGCTGTT
CACCTTGTTGACATCATGTACAGTTATTGCTTTACTCTTCGCCTCTACAATGGTGACTGG
CAATCAGATCCCGTAGGATCAGCCACAGTTTTGTTGAGCGTCTCTTCTGTTCTTGGTCAA
GGGGGGCAGCCAGAGACAGTCCTGGAAGCTCTATCCCACTGCATGGAGCAAACATGCTCA
TCAGCCTTCAGACACACGGGGGGCCTGCAATTCGCATTGGGGCTAATCAACGACACAATA
ACCCTTCTTCATCTTGATACTCCAGCCGTAGTTTGCCTGCTTTGTGACCTAAGGAGACTA
ATCCAACACGCAGAGAAGGATTTGAAGTCGGAGAAGTACTGCAAGTCCAAAAGTTCTGAA
ATGAAAACGAAGCTCAAGTCTGCAGAAAGGAAGGTTTATTTTATCATGTGTTGGGCTCAC
GAGCAGCCAAAAGAAGCATGGTCTTCCATAGCAGCCATTGTCGAGGCAGAGAAGAGCCGA
CTAGTTGAATTCGTAGGGAGTAAAACAAGTGTTCCAAAAATGACGAAAGTACAGAGTGAG
GGCAGGCCTCTGATTAAGGAGGTTGAATAA

Peptide Sequence

PEP ID

Solyc08g082960.3.1
PEP Infomation

HIT zinc finger protein (AHRD V3.3 *** A0A072VFL0_MEDTR)
Sequence

MADEIITSEGVSSSSELNSSSRIICRVCQKQFSQYTCPRCNTRYCSLPCYKSHSLRCTES
FMRENVMEELQHLQPNDGSKQKMLDILKRFHSEDEADIMDEDDSPLSEETIQKVLSGNQI
SFEDLSAEEKKHFQRAVASGELSKLIKPWEPWWSKPSAKYISLGQDGTQLVQPLVKEDTA
VSSEDRIGSDPLHDIPLGPDSPLPSVRKLSAAGPSPLLAVHLVDIMYSYCFTLRLYNGDW
QSDPVGSATVLLSVSSVLGQGGQPETVLEALSHCMEQTCSSAFRHTGGLQFALGLINDTI
TLLHLDTPAVVCLLCDLRRLIQHAEKDLKSEKYCKSKSSEMKTKLKSAERKVYFIMCWAH
EQPKEAWSSIAAIVEAEKSRLVEFVGSKTSVPKMTKVQSEGRPLIKEVE*

Transcript Sequence

Transcript ID

Solyc08g082960.3.1
Transcript Infomation

HIT zinc finger protein (AHRD V3.3 *** A0A072VFL0_MEDTR)
Sequence

GAAAAACAAAAAAAAACCTTCGCGGGTTTTCTAGAGAGATTGTTGGATTTTTTTTTCTCA
AGTAAAAAAGCTACAGCTTTCAAGGTTTTGATCTTTTTCTCTTAATTAATTGCTTTACTT
TTTGCCATGGCCGACGAAATTATAACATCGGAGGGAGTTTCAAGTTCGTCTGAGCTGAAC
TCGTCGTCTCGTATAATATGTCGGGTTTGTCAAAAGCAATTTTCGCAGTATACCTGCCCT
CGATGTAATACCCGTTATTGCTCTCTGCCTTGTTACAAGTCTCATAGTCTTCGTTGCACC
GAATCCTTTATGAGAGAGAATGTCATGGAGGAACTACAGCATTTGCAACCAAATGATGGA
AGTAAGCAGAAAATGCTAGACATACTTAAACGATTCCACTCAGAAGATGAAGCAGACATC
ATGGATGAAGATGATTCCCCGTTGTCTGAGGAAACAATTCAAAAAGTTCTATCTGGAAAC
CAGATAAGTTTTGAAGATTTATCTGCTGAAGAAAAGAAACATTTCCAAAGGGCTGTTGCC
TCAGGTGAGTTGAGCAAATTGATTAAGCCCTGGGAGCCATGGTGGTCGAAGCCTTCTGCC
AAGTACATATCTCTTGGTCAGGATGGAACTCAACTGGTCCAGCCGCTTGTGAAGGAGGAT
ACAGCTGTGTCTTCGGAAGACAGAATAGGAAGTGACCCTTTGCATGACATTCCACTTGGC
CCTGACTCTCCATTACCCTCGGTTAGAAAGCTCAGTGCAGCTGGGCCATCCCCTTTACTG
GCTGTTCACCTTGTTGACATCATGTACAGTTATTGCTTTACTCTTCGCCTCTACAATGGT
GACTGGCAATCAGATCCCGTAGGATCAGCCACAGTTTTGTTGAGCGTCTCTTCTGTTCTT
GGTCAAGGGGGGCAGCCAGAGACAGTCCTGGAAGCTCTATCCCACTGCATGGAGCAAACA
TGCTCATCAGCCTTCAGACACACGGGGGGCCTGCAATTCGCATTGGGGCTAATCAACGAC
ACAATAACCCTTCTTCATCTTGATACTCCAGCCGTAGTTTGCCTGCTTTGTGACCTAAGG
AGACTAATCCAACACGCAGAGAAGGATTTGAAGTCGGAGAAGTACTGCAAGTCCAAAAGT
TCTGAAATGAAAACGAAGCTCAAGTCTGCAGAAAGGAAGGTTTATTTTATCATGTGTTGG
GCTCACGAGCAGCCAAAAGAAGCATGGTCTTCCATAGCAGCCATTGTCGAGGCAGAGAAG
AGCCGACTAGTTGAATTCGTAGGGAGTAAAACAAGTGTTCCAAAAATGACGAAAGTACAG
AGTGAGGGCAGGCCTCTGATTAAGGAGGTTGAATAACTGTCTGTTCCTTCTGCATGACAA
GCTGCAGCAGATAACACAAGATCAGTGATGCTTGCAAAAATGTTAAGTTCAGATCACTGA
GTTTTGACTTTGTATAATTGCCTGAATTATTTTATTCACTTTCTCTTTGGAACTTTTTCA
TGGGCCACTGAAAC