Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g082260.2.1
CDS Infomation

Protein phosphatase 2c, putative (AHRD V3.3 *** B9RIK1_RICCO)
Sequence

ATGGTATCAGATCCAGGAAATAACAAGCCAAGAGATGTCTTTCACAAAAGAATTCTTAAA
TCTTACCATAAAAGACAACAACTTCAACAACGTATCATGACTTCTACAAATTCATCCGAT
GAAAATGATGCAATTTCAGCTTATCGAGATCAGGACAAGGATTATAACCCTAAAAAACGT
TTTTGCCTAAGGGAAAATGAACCAATTGATAAAAGTTCCTCCAATAGTACTACTACTAAT
TATACCATCGAGCTACGCTCGATGGGAAGTAGTAGTACTGTTGTTGAAATTCCAGGTGAT
AATATAGAGTTAAAGTATGGATGTATATCGATGATCGGACGGAGGAGAGTGATGGAAGAC
GCTATAAAAGCTTCGATTAAAATGGCGAATAATGAGTTCATATTTTTCGGAGCGTATGAT
GGTCATGGAGGGTCTAGGGTTTCACATGCATGTCGTGATCGTTTAGATTATGTACTCGAG
GAGGAGTTATTAAACGCTAAGAGAAAATTAATGAATAATGATGATGATGGTAGTGATAAT
AGTAATTATGTGGATTGGGAAAAGGTGATGGTGAAGTGTTTTTCGAAGATAGATAATGAA
GTTATGAGAGAAGGGAATTGGATAGCGGGGTATGAGGAGGGTAGATACGAGGATGTAAAG
AAGACGGTGGGATCTACGGCGGTGGTGGTGATGGTGGGAAAAGAAGAAATAGTGGTGGCT
AATTGTGGTGATTGCAGGGCTATACTTTGTAGTCGTGGTGTTGCTATACCCTTGTCCAAT
GATCATAAGCCTGATAGACCAGATGAAAAGAAAAGGGTAGAAGCAGCAGGTGGTAAAATT
CTAAATTGGAATGGTAGTAGAGTCCAAGGAATCCTAGCTACTTCAAGATCCATAGGTGAT
CATTGTCTAAAACCATTTGTGATACCAGAGCCAGAAGTGACAGTATACAAACGTAACGAA
TTGGACGAATTCATAGTAATTGCCACAGATGGTTTATGGGATGTTGTGTCCAATGAGGTA
ACCTGCGACGTCGCGAGAAAATGTCTCCGACAAATTCGGAGGAAGTTCCCCGAACGAGAC
AGTGCAGCGGATGCCGCCGCACTGTTAGCCGAGTTGGCTATTGCTAGGGGAAGTAAAGAC
AATATTAGTGTTATAGTAGTTGAGCTTGATAAAATGAGTTGA

Peptide Sequence

PEP ID

Solyc08g082260.2.1
PEP Infomation

Protein phosphatase 2c, putative (AHRD V3.3 *** B9RIK1_RICCO)
Sequence

MVSDPGNNKPRDVFHKRILKSYHKRQQLQQRIMTSTNSSDENDAISAYRDQDKDYNPKKR
FCLRENEPIDKSSSNSTTTNYTIELRSMGSSSTVVEIPGDNIELKYGCISMIGRRRVMED
AIKASIKMANNEFIFFGAYDGHGGSRVSHACRDRLDYVLEEELLNAKRKLMNNDDDGSDN
SNYVDWEKVMVKCFSKIDNEVMREGNWIAGYEEGRYEDVKKTVGSTAVVVMVGKEEIVVA
NCGDCRAILCSRGVAIPLSNDHKPDRPDEKKRVEAAGGKILNWNGSRVQGILATSRSIGD
HCLKPFVIPEPEVTVYKRNELDEFIVIATDGLWDVVSNEVTCDVARKCLRQIRRKFPERD
SAADAAALLAELAIARGSKDNISVIVVELDKMS*

Transcript Sequence

Transcript ID

Solyc08g082260.2.1
Transcript Infomation

Protein phosphatase 2c, putative (AHRD V3.3 *** B9RIK1_RICCO)
Sequence

TATAATGGTATCAGATCCAGGAAATAACAAGCCAAGAGATGTCTTTCACAAAAGAATTCT
TAAATCTTACCATAAAAGACAACAACTTCAACAACGTATCATGACTTCTACAAATTCATC
CGATGAAAATGATGCAATTTCAGCTTATCGAGATCAGGACAAGGATTATAACCCTAAAAA
ACGTTTTTGCCTAAGGGAAAATGAACCAATTGATAAAAGTTCCTCCAATAGTACTACTAC
TAATTATACCATCGAGCTACGCTCGATGGGAAGTAGTAGTACTGTTGTTGAAATTCCAGG
TGATAATATAGAGTTAAAGTATGGATGTATATCGATGATCGGACGGAGGAGAGTGATGGA
AGACGCTATAAAAGCTTCGATTAAAATGGCGAATAATGAGTTCATATTTTTCGGAGCGTA
TGATGGTCATGGAGGGTCTAGGGTTTCACATGCATGTCGTGATCGTTTAGATTATGTACT
CGAGGAGGAGTTATTAAACGCTAAGAGAAAATTAATGAATAATGATGATGATGGTAGTGA
TAATAGTAATTATGTGGATTGGGAAAAGGTGATGGTGAAGTGTTTTTCGAAGATAGATAA
TGAAGTTATGAGAGAAGGGAATTGGATAGCGGGGTATGAGGAGGGTAGATACGAGGATGT
AAAGAAGACGGTGGGATCTACGGCGGTGGTGGTGATGGTGGGAAAAGAAGAAATAGTGGT
GGCTAATTGTGGTGATTGCAGGGCTATACTTTGTAGTCGTGGTGTTGCTATACCCTTGTC
CAATGATCATAAGCCTGATAGACCAGATGAAAAGAAAAGGGTAGAAGCAGCAGGTGGTAA
AATTCTAAATTGGAATGGTAGTAGAGTCCAAGGAATCCTAGCTACTTCAAGATCCATAGG
TGATCATTGTCTAAAACCATTTGTGATACCAGAGCCAGAAGTGACAGTATACAAACGTAA
CGAATTGGACGAATTCATAGTAATTGCCACAGATGGTTTATGGGATGTTGTGTCCAATGA
GGTAACCTGCGACGTCGCGAGAAAATGTCTCCGACAAATTCGGAGGAAGTTCCCCGAACG
AGACAGTGCAGCGGATGCCGCCGCACTGTTAGCCGAGTTGGCTATTGCTAGGGGAAGTAA
AGACAATATTAGTGTTATAGTAGTTGAGCTTGATAAAATGAGTTGAATGACATTAATTAA
ATTTCCTCCCTTGTAATAGAGGCTCAAAATTTTTGTCTTGTTTAATTTCTCCCCTAAATT
AGTGTTTGTGTTGGTTCTTAGCTTTTGGTGACCAGTTTTAGAGTTTATTTGCCAAGTTGA
GTGACAAAAATAATGTTATTCTCGGTAATTAA