Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g080850.3.1
CDS Infomation

Serine/threonine-protein kinase RIO1 (AHRD V3.3 *** K4CP83_SOLLC)
Sequence

ATGGAGGAACTTGCTGACAAAATAGAGATACCCCAGAAAGCTGAAGATAAGAAAGATGAA
GAATTGGAGGAATTGGAAGATGAAGATGAAGAGGGAGAGTTATCATGGTCTTCCGACTCT
GAAATTGGTGAAGCTTTGGATTATTTGGACACAAAAGATAATTCTGAATCGAATGTTGGT
GCTTTTAGTCTCCAAACAAGGCGTCCAAATGCTCATGGAGGACTTCATACTCGACCCAAT
TCTTCAGCTTTACAACCCCTTTCAAATCGTACCCAGAAATTTGCTAATCATATCAGAGCT
TCACCATTAGAGGAATGGGAAGGGAGGATCAAAGTTGGCATGTCAAATTCTGTGACTACT
GCTATCCGTGGAAGTGTTCGGGATATGGCTATTGGTAAAACTAAAACTACTGAGAAAGCA
GATCGTGCCACTGTTGAACAGGCAATTGATCCTAGAACAAGAATGGTTTTGTTTAAAATG
CTCAATCGCGGTGTCTTTCATGATATTAATGGCTGCATTTCAACTGGGAAAGAGGCCAAT
GTTTATCATGCAACAAAAGCCGATGGTCAGGAACTGGCGATCAAAGTATACAAAACTTCA
GTTCTTGTATTCAAGGATAGAGATCGCTACGTACAGGGTGACTATCGCTTTAGATATGGA
TACTGCAAGCACAATCCACGGAAAATGGTTAAAACATGGGCTGAGAAAGAAATGAGGAAT
CTAATGAGGCTAAGGGCAGCTGGAATCAGGTGCCCAGCTCCAATTCTCTTGAGGCTTCAT
GTTCTTGTTATGGAATTCATAGGGAAAGGAGGCTGGGCAGCACCTCGACTAAAGGATGCT
GCTTTATCTAGTGACAAGTTACGTGAATGTTATGTGGAGATCATTATGGCAATGAGAACT
CTATATCAGAAATGCAAGCTAGTCCACGGTGACTTAAGCGAGTATAACATTCTATATTTC
GAGGGTCACCTATATGTTATTGATGTTTCACAATCAGTTGATCTTGACCATCCTCATGCA
CTTGATTTCCTCCGAGAGGATTGTGTACATGTTTCTGATTTTTTTAAAAAACATGGTGTG
GCTGTTATGACAATCCGAGAGTTGTTTGATTTTATAGTTGATCCAACTATCAATGATGAT
TCAGTGGATAGCTATTTGGAGAAGGTTCAAGAGAGAATTTTGGCTAGAGGTGACATGACT
GCAGAAGAAGAAATTGCCGACTCTGTATTTATTCAGTCATTTATTCCCAAGACACTTGAT
CATGTGAAAGACGCTGAAGCAGATGTTCAACGCATTATTAGTGGCGAGGACACAGGAGAC
ATGTACTACAAAACTATTACAGGTCTGAAGCAGGCTCTCACCGCTACAAACTCTTCAGCA
GAAGATCAGCAGCACCTACAAATTGACGAGCTGGGACAAGAGACCGCTGCTGCAGCTGAA
ACCAACAAACCATCTGATGGTGAATCAGAGACAGAAACCGAGTCAGATGATGATGACGAC
GATGAAAGTGATTGTAGTGAAGGCTCATCATCTGATGGCGAGAAACCAACAGCTGCTGAT
AAGAAAGCAGCTAGAAAAGAGAACAAGAAGAAAGTTAAAGAAGAGAAAAGAGAAGCGCGG
AAACATAAAGTACCAAAAGCTGTGAAGAAGAAGAAGAAAAAGTTGGCCAAGGCCAAGAAG
TATAGGTAA

Peptide Sequence

PEP ID

Solyc08g080850.3.1
PEP Infomation

Serine/threonine-protein kinase RIO1 (AHRD V3.3 *** K4CP83_SOLLC)
Sequence

MEELADKIEIPQKAEDKKDEELEELEDEDEEGELSWSSDSEIGEALDYLDTKDNSESNVG
AFSLQTRRPNAHGGLHTRPNSSALQPLSNRTQKFANHIRASPLEEWEGRIKVGMSNSVTT
AIRGSVRDMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEAN
VYHATKADGQELAIKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRN
LMRLRAAGIRCPAPILLRLHVLVMEFIGKGGWAAPRLKDAALSSDKLRECYVEIIMAMRT
LYQKCKLVHGDLSEYNILYFEGHLYVIDVSQSVDLDHPHALDFLREDCVHVSDFFKKHGV
AVMTIRELFDFIVDPTINDDSVDSYLEKVQERILARGDMTAEEEIADSVFIQSFIPKTLD
HVKDAEADVQRIISGEDTGDMYYKTITGLKQALTATNSSAEDQQHLQIDELGQETAAAAE
TNKPSDGESETETESDDDDDDESDCSEGSSSDGEKPTAADKKAARKENKKKVKEEKREAR
KHKVPKAVKKKKKKLAKAKKYR*

Transcript Sequence

Transcript ID

Solyc08g080850.3.1
Transcript Infomation

Serine/threonine-protein kinase RIO1 (AHRD V3.3 *** K4CP83_SOLLC)
Sequence

CCAAATAAAGATAGAGTCTTCTTAAAAGGAAAAAGGAAGTAATGAACTAAACTTTGTATG
TAATATAAGTAATTTTCTAAACTTTGCTTTGACATTATTTAATAATAAGTGATATTTTGA
GCTTTGTGATCCTTTGAATGATATTCATTATATTGTATGAAAAACAAGCCAAAAGTGAAC
TACATGTTAAGTCAAATAATAAAAGGTAAACACGTAAGGAGAAATTGTGAAATTACCATG
CTACTTAAGTCGAGTTAATTTTAATAAGCTGATATAATACATTTTACTAACTGTTTATAA
TATAACATGCTGATAATAATATCTTATTTATTAAAATACCAAATAAAATAAAATTTATCT
TATTTATTACAGTACTAATTAAAATAAAATATCTTATTTATTACAATACCAATTAAAATA
AAAAAAAAACATTCTAAGGTACAATAGGGCTATAGTCACGTCGACATTCGGGACATGTCA
TGTTCGTACTCATCCACCGATATATGCAGTCATGATGATATACATGCCTACACGGGAGGA
CAAGTACGGACTCAGTCTGTTCAAACTCAGTCAAACAAACCCGACATGTTCCGTCAGTGA
AACCAATTTCTTCATGTACCGAATAAGGTACACAAAGAAATGAACTAGTAACCCTGTTAA
GATGTTCCGCATGACGTCTCATCCTAAAACGGACCTCCCAATAAACAACTAATAGTAAAA
CTAAAAGTAATCCAAAAAAACCCAGAATATAGTAAGTAAAAGTCGATCTTTTAGGAATCC
AATCCTCCACTTGACTGTTGACACCATCAACGAAACACATAACAAGGAAAATCTGTTTCA
AAAGAAATATTTTTTATATGAATTCGACAAAAGAAATGTATATATATATATATATATGCA
AAGCTACCTAAGAGATAAATTCATACCTTAAAGACGAAGTAGAAGAAGAACATGGTTCCT
GTTGCTCAAATGGGATTTATGATAAATGATAGTTTTCTTTTTCTTTCTTCAAATGAACAA
CAATGGTGTTTGTGGTATACATAATTTGAAAAAGTAAAGAGTGAACGTTTTAATTATTTG
TAATTTACTTGCTACAAGTTATTAGTTTTTGCTGTAAATGTCTTTTTTTAGCTAAGGAAC
CATACAAAAAAAACTCTTTCTTTTTGTGGTTTGAAAGCGTAAATGGTTGAACTTGCAGTC
AAAATAGGAAGAGGAACGAAGATGAATTGAGAGAGTTATCATTGCACAAGAAAGATAATT
GTGAATCGAAGTTGTTGCACACCCAATTCTTCATCAGAAATTTTGCTAATCATATTAGAG
TGAGGTAGTTTTTGAATCTTTTATTTCTTATTTTGCTGAATTTGAGATTGTTTAATTAAA
CAAAAACAGATTTTTTTTTAAAGTTTAACTGTTAATATTGTTACTTGTTAGTAAGTTAAG
CTTAATGCTAGCATAATTTTGAAGTTTAATTAAACGAGAAAAGTGTTATTTTTCTTATAG
ATTTGAGAGATAAATTAATTATTTGTTATCGTCGTAAAATCAAACGAGCTCCATACCCGG
CCCAAATTGATTGCATCCAACAAAACCGACCCATTAAAAAAACCTTTGCAGAAAACTATA
CTGGTATTACCGGCGGCGGCTGTCAAAGCTCTTCCTTAAAACTTTACTTGTATTGCCGGC
GGCGTCACAACCGGTCGAAAATCTTCAAGAAAACAAAAATGGAGGAACTTGCTGACAAAA
TAGAGATACCCCAGAAAGCTGAAGATAAGAAAGATGAAGAATTGGAGGAATTGGAAGATG
AAGATGAAGAGGGAGAGTTATCATGGTCTTCCGACTCTGAAATTGGTGAAGCTTTGGATT
ATTTGGACACAAAAGATAATTCTGAATCGAATGTTGGTGCTTTTAGTCTCCAAACAAGGC
GTCCAAATGCTCATGGAGGACTTCATACTCGACCCAATTCTTCAGCTTTACAACCCCTTT
CAAATCGTACCCAGAAATTTGCTAATCATATCAGAGCTTCACCATTAGAGGAATGGGAAG
GGAGGATCAAAGTTGGCATGTCAAATTCTGTGACTACTGCTATCCGTGGAAGTGTTCGGG
ATATGGCTATTGGTAAAACTAAAACTACTGAGAAAGCAGATCGTGCCACTGTTGAACAGG
CAATTGATCCTAGAACAAGAATGGTTTTGTTTAAAATGCTCAATCGCGGTGTCTTTCATG
ATATTAATGGCTGCATTTCAACTGGGAAAGAGGCCAATGTTTATCATGCAACAAAAGCCG
ATGGTCAGGAACTGGCGATCAAAGTATACAAAACTTCAGTTCTTGTATTCAAGGATAGAG
ATCGCTACGTACAGGGTGACTATCGCTTTAGATATGGATACTGCAAGCACAATCCACGGA
AAATGGTTAAAACATGGGCTGAGAAAGAAATGAGGAATCTAATGAGGCTAAGGGCAGCTG
GAATCAGGTGCCCAGCTCCAATTCTCTTGAGGCTTCATGTTCTTGTTATGGAATTCATAG
GGAAAGGAGGCTGGGCAGCACCTCGACTAAAGGATGCTGCTTTATCTAGTGACAAGTTAC
GTGAATGTTATGTGGAGATCATTATGGCAATGAGAACTCTATATCAGAAATGCAAGCTAG
TCCACGGTGACTTAAGCGAGTATAACATTCTATATTTCGAGGGTCACCTATATGTTATTG
ATGTTTCACAATCAGTTGATCTTGACCATCCTCATGCACTTGATTTCCTCCGAGAGGATT
GTGTACATGTTTCTGATTTTTTTAAAAAACATGGTGTGGCTGTTATGACAATCCGAGAGT
TGTTTGATTTTATAGTTGATCCAACTATCAATGATGATTCAGTGGATAGCTATTTGGAGA
AGGTTCAAGAGAGAATTTTGGCTAGAGGTGACATGACTGCAGAAGAAGAAATTGCCGACT
CTGTATTTATTCAGTCATTTATTCCCAAGACACTTGATCATGTGAAAGACGCTGAAGCAG
ATGTTCAACGCATTATTAGTGGCGAGGACACAGGAGACATGTACTACAAAACTATTACAG
GTCTGAAGCAGGCTCTCACCGCTACAAACTCTTCAGCAGAAGATCAGCAGCACCTACAAA
TTGACGAGCTGGGACAAGAGACCGCTGCTGCAGCTGAAACCAACAAACCATCTGATGGTG
AATCAGAGACAGAAACCGAGTCAGATGATGATGACGACGATGAAAGTGATTGTAGTGAAG
GCTCATCATCTGATGGCGAGAAACCAACAGCTGCTGATAAGAAAGCAGCTAGAAAAGAGA
ACAAGAAGAAAGTTAAAGAAGAGAAAAGAGAAGCGCGGAAACATAAAGTACCAAAAGCTG
TGAAGAAGAAGAAGAAAAAGTTGGCCAAGGCCAAGAAGTATAGGTAAAATCATCTGCAGT
ATAAAAGAAAGTTTTGTTTTGAGGTTTATATTGTGTAGAAAGGATGTTAAAGTTAATAGT
TTTTAGTTAAAATTATGCAAAACTGAGTGAGGGGTCTGCAAAGTCAACACATTTTTCGCG
TAAATTACAACTTTCAACAATTTTGGTCAATCAGTGTAACTTGTTTTCCATGTATTTCTA
ACAAACAAGGCAGATATCCCACTTCATTGAACCATGTTTTTCCATGAAAAATACATTTTA
CGAGTAGTAACGGTATCGTGGAGCTCGAATAAGCTCATTTGGGTAGAAATCTTTCTTGTT
ATAGATAAACCATCTGATATTCATAATCTATTGGTTCAACTAATTTAGGCTCGAGTCAAT
CTAAGACGTCTGATTAAAGGTGGGGGGATTTCAACTATCTCGTCATAATCATGAAAATTG
TGGTTATGTTACTCATGGTGAAACTTTTGTAAGTATTAAATCAGGACTTTGACAATTGTC
CCATCAAGAAAAGTAGGACAAAAATATAATTGATCTTGGCCTAAACTTTTGTAGTGTTGA
CAATTTCAAATTTCAATATTCTTCTAACAAATATGTATATATATATATATATATATATAT
ATATATATATCCATCTATAAATTGCCAAACAACAAAACCAAACAAGATAAATCTGTTGAT
GAATTGCCGAGTAAATAGATCAGATCCTAATAGAATTTTCTTAGACAAACACGATTTGCT
TCTACCAATTTCAGGATACCATAATATGTCGAAAATAAGAAAAGGTATTTAGACGTAACC
GCTCCCGTTTCAAAGGGGAAAACTCTAATAAACTTTGCAACAAAAACTCAAGAAACACCC
TCTGACTGATCTTTATTTATCAAAGATCTTTACAGGATATACTTTTTTTTTTTTATCATC
TGTGAGTCTTGTAAGTATAAATGCTTTACAGGATTCATAACCAAACAAGAGAGGCAATAT
TTAATTTGTCTTCACTCTGCTGATTTGCTTTTACTAAAACATGATCTTGACCAGAAATTG
GTTAAAAATCCTTTCTTTTTCCTGCATTATAAAAACAAGAAAATACAGTTTTTTAACAAG
GGAAAAAACAATAAAACATGCTTTAACTTAAAAGGTATCTTT