Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g080550.1.1
CDS Infomation

Dead box ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9RC60_RICCO)
Sequence

ATGCCTGCTTTAGTGCTAACAAGGGCCCTCTTGTTAATTGGGGATTCTTTAGCTTTCAGA
AAAGCTACACAGTTTACACGGATAGCTCCATCTCAAGGCAATGTTCGCTTTTTAAGTAGC
AGTGGATCCCTCACTCTAGCTAGCCTTGGATTGAAGAGTGAAGTTAAGACAGTAAGTGCA
AATGAGAAAAATAAGCTCCAGCAGGGAATTTCAACTATTGAGGTCCCAAAGAGCAGAGAG
AAGAAAAGAGTTAGTGGCAATAAACAAGGATTGGTTAAGGAGAAAAACCCAGTAGATATA
ATGACTGCACCATTTGCTGCGAAGTCATTTTCAGAACTTGGCCTTCCACCTTTGTTGGTC
GAAAGACTAGAGACGGAAGGCTTTACGATTCCGACTGATGTTCAAGCTGCTGCAGTTCCA
ACTGTTCTTAAAAATCATGATGTTGTGATTCAGTCCTACACAGGTTCAGGAAAAACATTA
GCTTATCTCCTTCCCATACTGTCTCGAGTTGGTCCGTTGAAGGAAGAACTTCCAGATGGC
TATGAAACTGGGAACAAAATAGACATCGAAGCAGTTATAGTAGCTCCTTCGAGGGAACTT
GGCATGCAGATTGTCAGGGAAGTTGAAAAGCTGTTAGGACCAGCGAATAAGAAACTAGTC
CAGCAGCTTGTAGGGGGTGCAAACCGATCTAGACAGGAGGATGCTCTGAAGAAGAACAAG
CCCGACATTGTAGTGGGGACACCAGGGCGGATAGCAGAGATTAGTGCAGCTGGAAAGCTT
CCTACCCATGGTTGTCGTTACTTGGTATTGGATGAAATTGATCAACTCCTTGCATTCACT
TTCAGGGAGGACATGAAGCGTATATTAGACCATGTGGGGAGAAGACCTGGTGCACGTGGA
GGAGAGTCAAATAGTCCACTTGTCAAGCGAGCTGCACGTCAGACTATTATGGTGTCTGCA
ACAGTGCCTTTTTCAGTTATAAGAGCAGCAAGAAGTTGGGGTTGTGATCCACTTCTCATC
CAAGCCAATAAAGTTGTTCCACTCGAGTCTGTCACTCCTTCTGGATCTGTTAATATACCG
GGAACACCTTCTACTACTGATTCAAGCTCAAGTGTACAACCTATGCCTGATGTTCAGAGC
TTACCCCCTAATTTGCAGCATTATTACACTATTACTAGGATACAGCACAAAGTTGATATG
TTAAGAAGGTGTGTGCACGCTCTGGATGCCAAATGTGTAATAGCTTTTATGAACCACACA
AAACAGCTAAAAGATGCTGTCTTCAAACTAGAAGCTCGTGGTATGAATGCTGCAGAATTA
CATGGTGATCTTAGCAAACTTGTGAGATCAACAATCTTAAAGAAGTTCAGAAATGGGGAG
ATTAGAGTGCTGCTAACGAATGAGCTTTCAGCTAGAGGCTTGGATTTACCTGAATGTGAT
CTTGTAGTTAATCTGGGGTTACCTACTGACTCGGTTCATTATGCTCATCGAGCTGGTCGT
ACGGGCAGGCTTGGTCGCAAGGGCACGGTAGTAACCATATGTGAAGAGTCAGAAGTCTTT
GTGGTAAAAAAGCTACAGAAGCAACTTTCCCTCTCTATCGAGGCATGTGAATTTTCTGAG
GGAAATCTTGTCATTATAGAAGATTAA

Peptide Sequence

PEP ID

Solyc08g080550.1.1
PEP Infomation

Dead box ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9RC60_RICCO)
Sequence

MPALVLTRALLLIGDSLAFRKATQFTRIAPSQGNVRFLSSSGSLTLASLGLKSEVKTVSA
NEKNKLQQGISTIEVPKSREKKRVSGNKQGLVKEKNPVDIMTAPFAAKSFSELGLPPLLV
ERLETEGFTIPTDVQAAAVPTVLKNHDVVIQSYTGSGKTLAYLLPILSRVGPLKEELPDG
YETGNKIDIEAVIVAPSRELGMQIVREVEKLLGPANKKLVQQLVGGANRSRQEDALKKNK
PDIVVGTPGRIAEISAAGKLPTHGCRYLVLDEIDQLLAFTFREDMKRILDHVGRRPGARG
GESNSPLVKRAARQTIMVSATVPFSVIRAARSWGCDPLLIQANKVVPLESVTPSGSVNIP
GTPSTTDSSSSVQPMPDVQSLPPNLQHYYTITRIQHKVDMLRRCVHALDAKCVIAFMNHT
KQLKDAVFKLEARGMNAAELHGDLSKLVRSTILKKFRNGEIRVLLTNELSARGLDLPECD
LVVNLGLPTDSVHYAHRAGRTGRLGRKGTVVTICEESEVFVVKKLQKQLSLSIEACEFSE
GNLVIIED*

Transcript Sequence

Transcript ID

Solyc08g080550.1.1
Transcript Infomation

Dead box ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9RC60_RICCO)
Sequence

ATGCCTGCTTTAGTGCTAACAAGGGCCCTCTTGTTAATTGGGGATTCTTTAGCTTTCAGA
AAAGCTACACAGTTTACACGGATAGCTCCATCTCAAGGCAATGTTCGCTTTTTAAGTAGC
AGTGGATCCCTCACTCTAGCTAGCCTTGGATTGAAGAGTGAAGTTAAGACAGTAAGTGCA
AATGAGAAAAATAAGCTCCAGCAGGGAATTTCAACTATTGAGGTCCCAAAGAGCAGAGAG
AAGAAAAGAGTTAGTGGCAATAAACAAGGATTGGTTAAGGAGAAAAACCCAGTAGATATA
ATGACTGCACCATTTGCTGCGAAGTCATTTTCAGAACTTGGCCTTCCACCTTTGTTGGTC
GAAAGACTAGAGACGGAAGGCTTTACGATTCCGACTGATGTTCAAGCTGCTGCAGTTCCA
ACTGTTCTTAAAAATCATGATGTTGTGATTCAGTCCTACACAGGTTCAGGAAAAACATTA
GCTTATCTCCTTCCCATACTGTCTCGAGTTGGTCCGTTGAAGGAAGAACTTCCAGATGGC
TATGAAACTGGGAACAAAATAGACATCGAAGCAGTTATAGTAGCTCCTTCGAGGGAACTT
GGCATGCAGATTGTCAGGGAAGTTGAAAAGCTGTTAGGACCAGCGAATAAGAAACTAGTC
CAGCAGCTTGTAGGGGGTGCAAACCGATCTAGACAGGAGGATGCTCTGAAGAAGAACAAG
CCCGACATTGTAGTGGGGACACCAGGGCGGATAGCAGAGATTAGTGCAGCTGGAAAGCTT
CCTACCCATGGTTGTCGTTACTTGGTATTGGATGAAATTGATCAACTCCTTGCATTCACT
TTCAGGGAGGACATGAAGCGTATATTAGACCATGTGGGGAGAAGACCTGGTGCACGTGGA
GGAGAGTCAAATAGTCCACTTGTCAAGCGAGCTGCACGTCAGACTATTATGGTGTCTGCA
ACAGTGCCTTTTTCAGTTATAAGAGCAGCAAGAAGTTGGGGTTGTGATCCACTTCTCATC
CAAGCCAATAAAGTTGTTCCACTCGAGTCTGTCACTCCTTCTGGATCTGTTAATATACCG
GGAACACCTTCTACTACTGATTCAAGCTCAAGTGTACAACCTATGCCTGATGTTCAGAGC
TTACCCCCTAATTTGCAGCATTATTACACTATTACTAGGATACAGCACAAAGTTGATATG
TTAAGAAGGTGTGTGCACGCTCTGGATGCCAAATGTGTAATAGCTTTTATGAACCACACA
AAACAGCTAAAAGATGCTGTCTTCAAACTAGAAGCTCGTGGTATGAATGCTGCAGAATTA
CATGGTGATCTTAGCAAACTTGTGAGATCAACAATCTTAAAGAAGTTCAGAAATGGGGAG
ATTAGAGTGCTGCTAACGAATGAGCTTTCAGCTAGAGGCTTGGATTTACCTGAATGTGAT
CTTGTAGTTAATCTGGGGTTACCTACTGACTCGGTTCATTATGCTCATCGAGCTGGTCGT
ACGGGCAGGCTTGGTCGCAAGGGCACGGTAGTAACCATATGTGAAGAGTCAGAAGTCTTT
GTGGTAAAAAAGCTACAGAAGCAACTTTCCCTCTCTATCGAGGCATGTGAATTTTCTGAG
GGAAATCTTGTCATTATAGAAGATTAA