Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g080410.3.1
CDS Infomation

UBX domain-containing protein
Sequence

ATGGCGAGACCTAATCAAGAAGAAATCGAGACATTCATGAGCATTACTGGTGTTTCTGAA
GCCACCGCTATTCAGAAACTTGAGGAGCATGGCGGGAGTCTGAATGAAGCTGTGAATGCG
CATTTCAACCAGGGGGACATCAATAGAGTACATCCAGCACCTGTTTCTGCTGCTCCACAC
GAGGATGATATGGAAATAGATGATCCGATTACAGAGGAATTTCACAGACCTCCCTTTTCA
GTTTTTTCCTCTTCTAGAACTCCAAGTGCTTTCTCCCTTCTTGATCCTAGTTTCACTCGA
AGTATGTTTGACACCGATCTTACTAGCCGTGCTCCGTTTGTTTCACATCCAAGACAAGTA
AGAGAGATCCCTATTGAGGTGAAGGATGGGGATGGACAATCTGGTCATTCTAGAAATGCT
CCTGTTATTGAGGATGTTACAGACGCTGACCAGACTCAAGGCCCAGAAACTCGTGGGACT
GTCATAATTGAGGAGGACGATGACGATGATGAAGTAATTCCAGGTCCCCTGGCAACACGT
GCTGTCAGGCGTGATAGAACAAATGATGATATCTTTGGTGGGGACTCTACAGCAGTATTC
TCAGGACCAAGTGCTCCTGGTGGTGATGTCTTACCAGACTATGCCAATGATATTGAGGAG
GAAATGGTTCGTGCTGCGATTGAAGCTTCTAGACGTGATGCTGAAATGTCGACCCAACAA
TTTGATGTCAACAGTGATCTAAGTGATTCAAGGCCTCAACCAAGGGAGTCTCATCTAGAG
GATGCTGAACTTGCACGTGCAGTCTCTTTGTCTTTGAAGGCTGCTGAGCAGGAGAAAGCG
ATGCATGAAGGAAGTAAAGCTATACCAGAATCAGAAGGTTATAAGCCAGCTGAAGAGAAT
GAGCATGGAAAATCAACAATTTCAAATGGAAGGCAATTTAGATCAGAGGTGGGGAGTTCA
TCCATCCAAGATGAGGCTGAAGATTTAGAAGAGGAACCACTGGTTTGGCGCAGAAGAAAA
CCTATATCTTCAGGTTCAGAAACAGCTCAGGATGTCGAAGAACGTGTTGTTAGCCCATTA
TCAAGTCCTCGACAGAATCTTAATCACTCCCCAAGAAACGGTGCTGACTTCCAGTCTGAT
GAGTGGGGGGGCATGTCATCCCTGGAGCATGATGAAGCTGTCATGCTTGAAGCTGCAATA
TTTGGTGGAATACCTGAGGGTACTGGATACCGATTGCCATCTGCACCTCGTCAGCCTATT
CAGAATGGTGCTGATGGACCTATGGGCCCCTATCAATGGCGCATGCCTCGTGCCCCATCT
CCGTCTCTTGTGGCACAGCGTTTACTTCGGGAACAGCAGGATGATGAATATCATGCTGCA
TTGCAAGCTGATAGAGAAAAGGAATTGAAGGCGAAGCAAGAAGCTGAAGCTGCACTTGAA
GAGAAGAGACTGGAGGAGGAGGAATTACGAAGGAAAGCAGAGGAGGAAAAGGAAATGGAG
AGACAACTAGCAGCAAAAGAAGCTTCCCTTCCTCAGGAGCCCACAGCAGATAATGAGAAT
GCTGTGAATCTCGTTGTGCGTATGCCTGATGGCAGCCGCAGAGGCCGGCGCTTTCTCAAA
TCTGATAGATTACAGTCCCTTTTCGATTACATTGATATCGGCAGAGTGATCAAGCCCGGC
ACATATAGATTGGTAAGACCTTACCCAAGGCGTGCTTTCAGTGACGGAGAGAGTACTGTG
TCTCTGGACGAACTGGGGTTGACCAGCAAACAAGAAGCCTTGTTTCTGGAGTCGATATAA

Peptide Sequence

PEP ID

Solyc08g080410.3.1
PEP Infomation

UBX domain-containing protein
Sequence

MARPNQEEIETFMSITGVSEATAIQKLEEHGGSLNEAVNAHFNQGDINRVHPAPVSAAPH
EDDMEIDDPITEEFHRPPFSVFSSSRTPSAFSLLDPSFTRSMFDTDLTSRAPFVSHPRQV
REIPIEVKDGDGQSGHSRNAPVIEDVTDADQTQGPETRGTVIIEEDDDDDEVIPGPLATR
AVRRDRTNDDIFGGDSTAVFSGPSAPGGDVLPDYANDIEEEMVRAAIEASRRDAEMSTQQ
FDVNSDLSDSRPQPRESHLEDAELARAVSLSLKAAEQEKAMHEGSKAIPESEGYKPAEEN
EHGKSTISNGRQFRSEVGSSSIQDEAEDLEEEPLVWRRRKPISSGSETAQDVEERVVSPL
SSPRQNLNHSPRNGADFQSDEWGGMSSLEHDEAVMLEAAIFGGIPEGTGYRLPSAPRQPI
QNGADGPMGPYQWRMPRAPSPSLVAQRLLREQQDDEYHAALQADREKELKAKQEAEAALE
EKRLEEEELRRKAEEEKEMERQLAAKEASLPQEPTADNENAVNLVVRMPDGSRRGRRFLK
SDRLQSLFDYIDIGRVIKPGTYRLVRPYPRRAFSDGESTVSLDELGLTSKQEALFLESI*

Transcript Sequence

Transcript ID

Solyc08g080410.3.1
Transcript Infomation

UBX domain-containing protein
Sequence

GAAGAACATTATAGAAGGAACAAGCAATTTCACTTTATTTACTTACAAGTCCCTCAAATT
TCACCCTAATTTCTATTTCAATCCCTTCTATAATTATATTCCTTTCTGCTCTTTCAGTTT
CCCCAAATACTATCTATCTATTTTACTCTTTCACGTTTCCTTCACAAATCAGTTGTTTAC
AAAGATCGGAGAATCTCTGTTTCTTCTGCAGAATTTTGGGGATTTTTTTGTGGAAAAATG
GCGAGACCTAATCAAGAAGAAATCGAGACATTCATGAGCATTACTGGTGTTTCTGAAGCC
ACCGCTATTCAGAAACTTGAGGAGCATGGCGGGAGTCTGAATGAAGCTGTGAATGCGCAT
TTCAACCAGGGGGACATCAATAGAGTACATCCAGCACCTGTTTCTGCTGCTCCACACGAG
GATGATATGGAAATAGATGATCCGATTACAGAGGAATTTCACAGACCTCCCTTTTCAGTT
TTTTCCTCTTCTAGAACTCCAAGTGCTTTCTCCCTTCTTGATCCTAGTTTCACTCGAAGT
ATGTTTGACACCGATCTTACTAGCCGTGCTCCGTTTGTTTCACATCCAAGACAAGTAAGA
GAGATCCCTATTGAGGTGAAGGATGGGGATGGACAATCTGGTCATTCTAGAAATGCTCCT
GTTATTGAGGATGTTACAGACGCTGACCAGACTCAAGGCCCAGAAACTCGTGGGACTGTC
ATAATTGAGGAGGACGATGACGATGATGAAGTAATTCCAGGTCCCCTGGCAACACGTGCT
GTCAGGCGTGATAGAACAAATGATGATATCTTTGGTGGGGACTCTACAGCAGTATTCTCA
GGACCAAGTGCTCCTGGTGGTGATGTCTTACCAGACTATGCCAATGATATTGAGGAGGAA
ATGGTTCGTGCTGCGATTGAAGCTTCTAGACGTGATGCTGAAATGTCGACCCAACAATTT
GATGTCAACAGTGATCTAAGTGATTCAAGGCCTCAACCAAGGGAGTCTCATCTAGAGGAT
GCTGAACTTGCACGTGCAGTCTCTTTGTCTTTGAAGGCTGCTGAGCAGGAGAAAGCGATG
CATGAAGGAAGTAAAGCTATACCAGAATCAGAAGGTTATAAGCCAGCTGAAGAGAATGAG
CATGGAAAATCAACAATTTCAAATGGAAGGCAATTTAGATCAGAGGTGGGGAGTTCATCC
ATCCAAGATGAGGCTGAAGATTTAGAAGAGGAACCACTGGTTTGGCGCAGAAGAAAACCT
ATATCTTCAGGTTCAGAAACAGCTCAGGATGTCGAAGAACGTGTTGTTAGCCCATTATCA
AGTCCTCGACAGAATCTTAATCACTCCCCAAGAAACGGTGCTGACTTCCAGTCTGATGAG
TGGGGGGGCATGTCATCCCTGGAGCATGATGAAGCTGTCATGCTTGAAGCTGCAATATTT
GGTGGAATACCTGAGGGTACTGGATACCGATTGCCATCTGCACCTCGTCAGCCTATTCAG
AATGGTGCTGATGGACCTATGGGCCCCTATCAATGGCGCATGCCTCGTGCCCCATCTCCG
TCTCTTGTGGCACAGCGTTTACTTCGGGAACAGCAGGATGATGAATATCATGCTGCATTG
CAAGCTGATAGAGAAAAGGAATTGAAGGCGAAGCAAGAAGCTGAAGCTGCACTTGAAGAG
AAGAGACTGGAGGAGGAGGAATTACGAAGGAAAGCAGAGGAGGAAAAGGAAATGGAGAGA
CAACTAGCAGCAAAAGAAGCTTCCCTTCCTCAGGAGCCCACAGCAGATAATGAGAATGCT
GTGAATCTCGTTGTGCGTATGCCTGATGGCAGCCGCAGAGGCCGGCGCTTTCTCAAATCT
GATAGATTACAGTCCCTTTTCGATTACATTGATATCGGCAGAGTGATCAAGCCCGGCACA
TATAGATTGGTAAGACCTTACCCAAGGCGTGCTTTCAGTGACGGAGAGAGTACTGTGTCT
CTGGACGAACTGGGGTTGACCAGCAAACAAGAAGCCTTGTTTCTGGAGTCGATATAAGTC
ATTCACGTTGTAAAGTAGTTTCAGATATTTCCTCAAAAACATAGATTTATACATACATAC
GTGAAAATGGTGTTCATGGGTTGGTTTATTTTGGTTGGTAAACATCGCTGCATATTTATC
TGGTCGCTAGGGAGAATGCCATTGATGATCATGGTGGGTGAGGAGTATTCCAACGATTTA
TGGTGCTTTATATGTGGAATTAAATCATTTGCTTTTTGAATTGTCCACAAAAATAGTATA
TAGCTTGTCAAATGGTTTATGTGGCATAAGCTGGAACTTAATGCGCATTATGGACCGGCT
TTAGAGAAATACGAGCATACTTCTTCTAGGTTCATTTAATTTGTTGTGTTTTAATTTATC
ACGTTGCTCAACTAAAGTGATTAGTTTACTAGATTATTCCCCTATTACTTTCATATCTCA
ATAGCGTAGAGTTTTTTGGGAACTTCTCTTTCATCATTTCATTTTGTGGGTTTTTTCTCT
CTCCATTTCAAATAAATTAAACTAGTAAAGGGGCTGTGCTTTGCGCAATCAAACGTTTCT
TGTATTTGATGTTTAAGTTAATTTTATAATAATAATTGATGA