Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g080250.3.1
CDS Infomation

APO protein 1 (AHRD V3.3 *** F4I896_ARATH)
Sequence

ATGTCTAGCGCAGTGGATGCTGTTGGAAATCCGATCCCAACATCGGCGGTGCTGATGTCG
GCGTCGAAGCACATAGATATTAGGTGCCGGAACGAGAATGTAGCATATCTCAAGTGCAAG
AAGGACGATCCAAACCCGGAGAAATGCCTCCAAAAAGGTCAACAAGTCACTCGCTGTGTT
CTTAGCCTGTTGAAGGATCTTCATCAGAGGTGTAACAAAGAGATGGATGCTTATGCTGGA
TGCATGTACTACAACACAAATGAGTTTGAGATGTGTCGTAATGAGCAGAAGGATTTTGAG
AAAGCCTGTGCTTGCCCAGGCGTGGTTGTGTATAAGAAGCCTCTGCAATTGGCTTATCCA
CTTCCGCTGAAGTTTGATCATAAATATAATGTAACTGGTCCAGGAAGACAAGGAACCTTT
CTTTGTATTGAAAGGAGGTATCCCCAAGGTCGAAACTCTAAGAAACGTGAACCTGTGCAG
CAGAATGTGGATCTTCCCCTGGTCCTGCCTAAGCAAAAGAAGAAGCCATATCCTATACCT
CTGAAGAAAATTCAGCAGGCTGCGAAGGCTGATAAGAAGTTGGCTGAGTTTGGAATAGAA
AAGAAGCTTGAACCCCCTAAGAATGGATTGCTTGTGCCTAGCCTAGTTCCCGCGGCTTAC
GAATTGTTAGATGATTGGAAACTTTTGATTAAAGGACTTGCACAACTACTCCACTATGTT
CCTGTCCATGCTTGTAGTGAATGCTCACAAATCCATGTTGCTCAAAGTGGTCATGAGATT
CAGGATTGCCTTGGCCCAACCAACAGTAGTCGCAGAAGCTTCCACTCCTGGGTGAAGGGA
TCAATTAATGATGTGCTAATTCCTATCGAGTCATACCATATGTATGATCCTTTTGGCACA
CGCATTAAGCATGAGACACGATTCAACTACGACAGAATTCCAGCAGCTGTTGAACTTTGC
ATCCAAGCTGGTGTGGATCTTCCAGGATATCCTTCACGGAGGAGGACTAAACCCATCAGA
ATGATGGGAAAGAAAGTAATCGACATAGGTGGATTAGTTGGAGAGCCTAGACCCACCATA
GACACAAATTCGGCTATTATGGATCTTGATACCCATCGGTCTTTTGAACGTTTTGCTCCA
CCGTTGGGGTCAGAGGTTCCACGTATTGCCCAGGAGACGATTGATGCATATGAGAGAGTG
AAACAGGGGGTGACGATACTGATGAAGAAGTACACTGTCAAAGCTTGTGGATACTGTTCA
GAAGTCCACGTGGGACCTTGGGGTCACAACGCTAAACTCTGCGGTGAATTCAAACACCAG
TGGCGGGATGGTAAACATGGCTGGCAAGATGCAACAGTGGATGAGGTATTGCCCCCTAAC
TATGTGTGGCATGTTCAAGATCCAAAAGGAACCCCATTGAGAAGTGCACTGAAGAGATTC
TATGGGAAGGCTCCAGCTGTGGTTGAAGTTTGTATGCAGGCTGGTGCTCAAATACCTCAG
AAGTATAAACCTATGATGAGGCTAGACATTGTGCTCCCTGAAAGTGAAGAAAGTCGCCTA
GTCGCGTAA

Peptide Sequence

PEP ID

Solyc08g080250.3.1
PEP Infomation

APO protein 1 (AHRD V3.3 *** F4I896_ARATH)
Sequence

MSSAVDAVGNPIPTSAVLMSASKHIDIRCRNENVAYLKCKKDDPNPEKCLQKGQQVTRCV
LSLLKDLHQRCNKEMDAYAGCMYYNTNEFEMCRNEQKDFEKACACPGVVVYKKPLQLAYP
LPLKFDHKYNVTGPGRQGTFLCIERRYPQGRNSKKREPVQQNVDLPLVLPKQKKKPYPIP
LKKIQQAAKADKKLAEFGIEKKLEPPKNGLLVPSLVPAAYELLDDWKLLIKGLAQLLHYV
PVHACSECSQIHVAQSGHEIQDCLGPTNSSRRSFHSWVKGSINDVLIPIESYHMYDPFGT
RIKHETRFNYDRIPAAVELCIQAGVDLPGYPSRRRTKPIRMMGKKVIDIGGLVGEPRPTI
DTNSAIMDLDTHRSFERFAPPLGSEVPRIAQETIDAYERVKQGVTILMKKYTVKACGYCS
EVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATVDEVLPPNYVWHVQDPKGTPLRSALKRF
YGKAPAVVEVCMQAGAQIPQKYKPMMRLDIVLPESEESRLVA*

Transcript Sequence

Transcript ID

Solyc08g080250.3.1
Transcript Infomation

APO protein 1 (AHRD V3.3 *** F4I896_ARATH)
Sequence

TGTTTAGCCCGAAATAAACTCTTAGCCCACTTAATCAAATTACCAGGCCTCAAGCGGCCC
AACTAATCAGCCCAAGTTTCAGTAGAAGAAATGTATGAGCAACCAATCGGAAGACAAGAG
AGTGAACCGATAGTTCGTGTGAAGTTTTGCCGATTGGAAAAATGTCTAGCGCAGTGGATG
CTGTTGGAAATCCGATCCCAACATCGGCGGTGCTGATGTCGGCGTCGAAGCACATAGATA
TTAGGTGCCGGAACGAGAATGTAGCATATCTCAAGTGCAAGAAGGACGATCCAAACCCGG
AGAAATGCCTCCAAAAAGGTCAACAAGTCACTCGCTGTGTTCTTAGCCTGTTGAAGGATC
TTCATCAGAGGTGTAACAAAGAGATGGATGCTTATGCTGGATGCATGTACTACAACACAA
ATGAGTTTGAGATGTGTCGTAATGAGCAGAAGGATTTTGAGAAAGCCTGTGCTTGCCCAG
GCGTGGTTGTGTATAAGAAGCCTCTGCAATTGGCTTATCCACTTCCGCTGAAGTTTGATC
ATAAATATAATGTAACTGGTCCAGGAAGACAAGGAACCTTTCTTTGTATTGAAAGGAGGT
ATCCCCAAGGTCGAAACTCTAAGAAACGTGAACCTGTGCAGCAGAATGTGGATCTTCCCC
TGGTCCTGCCTAAGCAAAAGAAGAAGCCATATCCTATACCTCTGAAGAAAATTCAGCAGG
CTGCGAAGGCTGATAAGAAGTTGGCTGAGTTTGGAATAGAAAAGAAGCTTGAACCCCCTA
AGAATGGATTGCTTGTGCCTAGCCTAGTTCCCGCGGCTTACGAATTGTTAGATGATTGGA
AACTTTTGATTAAAGGACTTGCACAACTACTCCACTATGTTCCTGTCCATGCTTGTAGTG
AATGCTCACAAATCCATGTTGCTCAAAGTGGTCATGAGATTCAGGATTGCCTTGGCCCAA
CCAACAGTAGTCGCAGAAGCTTCCACTCCTGGGTGAAGGGATCAATTAATGATGTGCTAA
TTCCTATCGAGTCATACCATATGTATGATCCTTTTGGCACACGCATTAAGCATGAGACAC
GATTCAACTACGACAGAATTCCAGCAGCTGTTGAACTTTGCATCCAAGCTGGTGTGGATC
TTCCAGGATATCCTTCACGGAGGAGGACTAAACCCATCAGAATGATGGGAAAGAAAGTAA
TCGACATAGGTGGATTAGTTGGAGAGCCTAGACCCACCATAGACACAAATTCGGCTATTA
TGGATCTTGATACCCATCGGTCTTTTGAACGTTTTGCTCCACCGTTGGGGTCAGAGGTTC
CACGTATTGCCCAGGAGACGATTGATGCATATGAGAGAGTGAAACAGGGGGTGACGATAC
TGATGAAGAAGTACACTGTCAAAGCTTGTGGATACTGTTCAGAAGTCCACGTGGGACCTT
GGGGTCACAACGCTAAACTCTGCGGTGAATTCAAACACCAGTGGCGGGATGGTAAACATG
GCTGGCAAGATGCAACAGTGGATGAGGTATTGCCCCCTAACTATGTGTGGCATGTTCAAG
ATCCAAAAGGAACCCCATTGAGAAGTGCACTGAAGAGATTCTATGGGAAGGCTCCAGCTG
TGGTTGAAGTTTGTATGCAGGCTGGTGCTCAAATACCTCAGAAGTATAAACCTATGATGA
GGCTAGACATTGTGCTCCCTGAAAGTGAAGAAAGTCGCCTAGTCGCGTAAGGTTCCTTAT
GTACAAGCCTGTACATTGTGTTCCCTGGCAGTGAAGAGAGTCGTCTAGTCTCGTAACTGT
TCTACATAGCTAAACGTACACAGTGTTTGTGTTATAAAGATGTATAAAAGTATGGAAATG
TAGCTTACATGATATTGTTCATCTCTTCATTGGGTGAGTATCTATTGAGGCTTGCAGTCT
TTATTTTGCCTCTGTAATGCAAGGATCAGTGCACTTATTTCAACTTAGATAATCAGCGTC
CACGTAATATAAGTCCAAATGATTCAAAACTGTT