Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g079620.3.1
CDS Infomation

ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4CNW2_SOLLC)
Sequence

ATGGCAGTAGCTCTTCCAACATCTTCTTCCTCGTATCTACACTCTAAAACTAAAATTCCT
AAGTCTTCTTTAAGCTGCTCCAGCAAAGTTTATGTCGGATTAAGAATCCAATCTCCAGGT
TCTTATGGGGTTGCGACATCTAATTCAAATGTTGATTTTTTCAACAGAGTTCATAAAAGT
ATTAAATCCGGAACTAAAGATGGTAAAGCAACACGTGCACAAGTTACCATGATGCCCATT
GGAACACCAAAGGTGCCCTATAGAAATCCAGTTGACGCATCATGGCAATGGGTTGATATA
TGGAATGCTCTTTACCGCGAACGTGTTATTTTCATTGGAGAAGAGATTACTGAAGAATTT
AGCAACCAGATATTGGCAACAATGCTGTACCTTGACAGTATTGATAATTCCAAGAAGCTC
TACATGTTTATCAATGGGCCTGGTGGTGATCTAACTCCAACCCTGGCCATTTATGACACA
ATGCAAAGTCTGAAAAGTGCTGTTGGTACCCACTGTGTGGGCTTTGCCTACAATCTTGCC
GCTTTTCTTCTTGCTGCTGGAGAAAAGGGCAATCGATGTGCAATGCCTCTTGCAAGGATT
GCACTAGAATCTCCAGCTGGAGCTGCACGCGGACAGGCTGACGATATCCGTAATGAAGCA
GAAGAACTTCTCAGAATTAGAAATTACCTTTTCAAGGAGTTGTCTGAGAAGACAGGCCAG
CCTATTGAAAAGGTTCACAAGGATTTGAGTCGAGTGAAGCGATTCACTGCTAAAGAAGCT
CTTGAATACGGTCTTATTGACCGTATAGTTAGGCCTAACCGTCTTGACGGAGATGCTCCG
CCGAGGGATATCACTGCAGGTCTTGGTTAA

Peptide Sequence

PEP ID

Solyc08g079620.3.1
PEP Infomation

ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4CNW2_SOLLC)
Sequence

MAVALPTSSSSYLHSKTKIPKSSLSCSSKVYVGLRIQSPGSYGVATSNSNVDFFNRVHKS
IKSGTKDGKATRAQVTMMPIGTPKVPYRNPVDASWQWVDIWNALYRERVIFIGEEITEEF
SNQILATMLYLDSIDNSKKLYMFINGPGGDLTPTLAIYDTMQSLKSAVGTHCVGFAYNLA
AFLLAAGEKGNRCAMPLARIALESPAGAARGQADDIRNEAEELLRIRNYLFKELSEKTGQ
PIEKVHKDLSRVKRFTAKEALEYGLIDRIVRPNRLDGDAPPRDITAGLG*

Transcript Sequence

Transcript ID

Solyc08g079620.3.1
Transcript Infomation

ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4CNW2_SOLLC)
Sequence

AAAAAAAAATTGACAACTCCTTCTCACACTCTTCTACCTTTGTTGCTTCACCAAAGCAGC
ATCAATGGCAGTAGCTCTTCCAACATCTTCTTCCTCGTATCTACACTCTAAAACTAAAAT
TCCTAAGTCTTCTTTAAGCTGCTCCAGCAAAGTTTATGTCGGATTAAGAATCCAATCTCC
AGGTTCTTATGGGGTTGCGACATCTAATTCAAATGTTGATTTTTTCAACAGAGTTCATAA
AAGTATTAAATCCGGAACTAAAGATGGTAAAGCAACACGTGCACAAGTTACCATGATGCC
CATTGGAACACCAAAGGTGCCCTATAGAAATCCAGTTGACGCATCATGGCAATGGGTTGA
TATATGGAATGCTCTTTACCGCGAACGTGTTATTTTCATTGGAGAAGAGATTACTGAAGA
ATTTAGCAACCAGATATTGGCAACAATGCTGTACCTTGACAGTATTGATAATTCCAAGAA
GCTCTACATGTTTATCAATGGGCCTGGTGGTGATCTAACTCCAACCCTGGCCATTTATGA
CACAATGCAAAGTCTGAAAAGTGCTGTTGGTACCCACTGTGTGGGCTTTGCCTACAATCT
TGCCGCTTTTCTTCTTGCTGCTGGAGAAAAGGGCAATCGATGTGCAATGCCTCTTGCAAG
GATTGCACTAGAATCTCCAGCTGGAGCTGCACGCGGACAGGCTGACGATATCCGTAATGA
AGCAGAAGAACTTCTCAGAATTAGAAATTACCTTTTCAAGGAGTTGTCTGAGAAGACAGG
CCAGCCTATTGAAAAGGTTCACAAGGATTTGAGTCGAGTGAAGCGATTCACTGCTAAAGA
AGCTCTTGAATACGGTCTTATTGACCGTATAGTTAGGCCTAACCGTCTTGACGGAGATGC
TCCGCCGAGGGATATCACTGCAGGTCTTGGTTAAGTCTATAAGTCTTGGCTGCAAGTGTT
GTTCTGCAAGAAAATTGTTTAATCTGCATATTGAACGCTTTTGATCTACTTATTCAAAAA
TTTGCATTGCTGTTGAAGTAAAAGAATTGAAGCTTAATCTTTCATATTATTTTATTTTTC
ACAAAAAAAATGTTCTGTTATATGTCTCTGTCGATTTTTCACTCCAAATGCATCGCTAAG
ACACTATGATTTCAAATCAGCATTTGGACATTATTTGTTA