Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g079060.3.1
CDS Infomation

Trehalose 6-phosphate phosphatase (AHRD V3.3 *** K4CNR5_SOLLC)
Sequence

ATGGACTTGAATTCGGCACAAGCTTCTCCAGTTCTTACTGATCCTTCACCGTTGAACAAG
TCCAGATTGGGAATCCATTCTAGTTTATTTCCTTATTCACAATCTGGGCCTTCATTCTCC
ACTAGTGTGCTATCAATTCCAAGAAAAAAGCCAGCGAAGCTTGATGATGTTCGATCCAAT
GGTTGGCTTGATGCAATGAAGTCGTCTTCACCTCCTAGGAAGAAGATTCTGAAGGATGTT
AACATTGATGTTTCTTCTGATGATGCTGATGTTACTTACCTTTCTTGGATGATGAAGTAT
CCATCAGCTCTCAACTGCTTTCAGCAAATTATGAGGCAAGCAAGGAATAAACAGATAGTG
ATTTTCTTAGATTATGATGGAACTCTTTCTCCTATCGTTGATGACCCTGACCGTGCTTTT
ATGTCCAATGAGATGCGTTCTGTTGTCAGTAATGTTGCAAAGTATTTTCCAACAGCAATC
ATCAGTGGGAGAAGACGTGATAAGGTTTATGAGCTGGTAGGTCTAACAGAACTCTATTAT
GCCGGTAGCCATGGTATGGACATCATGCTGCCAATCAAGAATACATCGTCTGCTAACGAT
TCAAATTGTATCAAAGATACTGACCAGCAGGGCAAGGAAGTCAATCTGTTCCAGCCTGCG
CGTAAATTTTTATCAATGATTGATGAGGTTTTTAAAACCCTTGTCGAGAAAACTAAAGAC
ATTAAGGGTGCAAAAGTTGAGCACCATAAGTTTTGTGCCTCTGTACATTACCGTAATGTA
GATGAGAATAGTTGGTCTCTCATTGCACAATATGTCCATGATGTCTTGAAAGACTACCCT
CGGCTACGGCTAACTCATGGGCGAAAGGTTTTAGAGGTCCGTCCTGATATTGACTGGGAC
AAAGGAAAAGCAGTTGAATTTCTGCTGGAATCACTAGGTTTTAGTAACCCCAGAGACGTG
CTCCCAATATATATTGGAGATGATAGAACAGACGAAGATGCATTCAAGGTATTGAGGGGG
AAATATAAAGGATATGGAATTCTTGTTTCAACTACCCCAAAAGAGAGCAATGCATCCTTT
TCTCTCAAGGATACTTCACAGGTCTGGCCAACTTTTCGTTTACGGATGTTAAAAAACGAC
AGGAAACTGAGAAATGCAGTTAATTTTGCGAAGCCGAATTTGATTTTCAAGCCTCGCCGG
TCGTTTCCTCTAATCCGAGCTTCCGCTGGCTTCTCCTCATCTCTCGATACAGGTTTGAGT
ACTGAATTGGATGCTGTAGCAAATCATAGTGAGATCGTTCCAGATACAGTCATTTTCGAT
GATTTCGAGAAATTTCCTCCAACTGCTGGTACTGTAAGCTCTTCTCTGCTCTTAGGCATA
TGTGGTCTACCTGATACAAAATTTAAGAGTGCTGTAGACAGAGCTTTATCAGATTCTGAG
TGTTATGGATTGGAGAGTTCTGATCTTCAGATGTCTTGTTTCTTCAACAAGGCTTTAGCA
CACGTTGGTGGTGATCTAGCAAAGCTTGTGCCTGGTCGAGTTTCTACTGAAGTGGATGCT
CGCCTCGCATACGACACACATGGCATTGTGCGAAAGGTGCATGACCTTTTGAAAGCCTAT
ACCGAAATTGAAGTGCCTCCAGAAAGATTGCTGTTCAAAATTCCTGCAACTTGGCAAGGT
TATCCTTTCTCATTTGTCAGTGTTTATCTTTCTTGTAGGGAATTGAGGCATCAAGGGTGC
TCGAAGCTGAAGGATTGGTCTCGCAATCACACTGGTGACTCTGAAGTTGAAAGTGCTCTT
AGAAGAGGAGAAGACCCAGGGTTGGCTTTGGTAACAAAAACTTATAACTACATCCACAAG
TATGGGCACAAAACAAAGCTGATGGCTGCTGCAGTACGGAACAAGCAGGATGTCTTCAAC
CTTTTGGGGGTTGATTACATTATTACCCCACTGAAGGTATTGCAGTCTCTTAAAGAATCT
GTGACCCTACCTGATGAGAAGTACTCATTTACAAGAAGATTATCTCCACAGTCAGCAGCT
GCCTTCAATTTCACTCAAGATGAGCTTCAAAAGTGGGATCAGTATAGCTTTTCCTCGGCT
ATGGGTCCTGCATCAGTGGAGCTCCTCACTATTGGACTGGATGGGTATATTAATCAGGCT
AAGCGGGTTGAAGAGTTGTTTGGCAAGATATGGCCACCACCAAATGTATGA

Peptide Sequence

PEP ID

Solyc08g079060.3.1
PEP Infomation

Trehalose 6-phosphate phosphatase (AHRD V3.3 *** K4CNR5_SOLLC)
Sequence

MDLNSAQASPVLTDPSPLNKSRLGIHSSLFPYSQSGPSFSTSVLSIPRKKPAKLDDVRSN
GWLDAMKSSSPPRKKILKDVNIDVSSDDADVTYLSWMMKYPSALNCFQQIMRQARNKQIV
IFLDYDGTLSPIVDDPDRAFMSNEMRSVVSNVAKYFPTAIISGRRRDKVYELVGLTELYY
AGSHGMDIMLPIKNTSSANDSNCIKDTDQQGKEVNLFQPARKFLSMIDEVFKTLVEKTKD
IKGAKVEHHKFCASVHYRNVDENSWSLIAQYVHDVLKDYPRLRLTHGRKVLEVRPDIDWD
KGKAVEFLLESLGFSNPRDVLPIYIGDDRTDEDAFKVLRGKYKGYGILVSTTPKESNASF
SLKDTSQVWPTFRLRMLKNDRKLRNAVNFAKPNLIFKPRRSFPLIRASAGFSSSLDTGLS
TELDAVANHSEIVPDTVIFDDFEKFPPTAGTVSSSLLLGICGLPDTKFKSAVDRALSDSE
CYGLESSDLQMSCFFNKALAHVGGDLAKLVPGRVSTEVDARLAYDTHGIVRKVHDLLKAY
TEIEVPPERLLFKIPATWQGYPFSFVSVYLSCRELRHQGCSKLKDWSRNHTGDSEVESAL
RRGEDPGLALVTKTYNYIHKYGHKTKLMAAAVRNKQDVFNLLGVDYIITPLKVLQSLKES
VTLPDEKYSFTRRLSPQSAAAFNFTQDELQKWDQYSFSSAMGPASVELLTIGLDGYINQA
KRVEELFGKIWPPPNV*

Transcript Sequence

Transcript ID

Solyc08g079060.3.1
Transcript Infomation

Trehalose 6-phosphate phosphatase (AHRD V3.3 *** K4CNR5_SOLLC)
Sequence

TCTATATATACTTAGGTTTCTTCACCTTAATTTTCCTTCTTCTTTCTTTTTTTCCCTTTC
ATTTCTTTTATTTTCTCTCTCTATATTTTATTTTCTTAGGGTTTTTCTCTTTTAATTTTC
TCTCCACTTCCTGCTGCCGTTTCTTTTTTAAAGGCATTTGAGAATTGGATTTTCAAGATT
GATTCTTTCTGATTCAAAGGGGCATGATATTATTAACAGGTAGGAAGACATGGTAGACTC
AGCTAATTTTTGAGCCAAAATGTCTTGTTTCTTAGTGTAAATGCAGTGTGGCTCAGGAGA
TGAGATTGCAGGAAGCCCGTACTTAATGGAATCCATTCCCAGCAGTAGTGATAAGAAAAC
TTTGAAGAGGTGGTTTTTCATTGATAAAAGGGTTGGTTAAAAATTCGCTACTCCCAAACA
TCCACTATAAAGTATCAACTGCATACCTATCAATTGCATAGTCAAACTCTGCCGAATCCA
TAGTGTTGCAATGGACTTGAATTCGGCACAAGCTTCTCCAGTTCTTACTGATCCTTCACC
GTTGAACAAGTCCAGATTGGGAATCCATTCTAGTTTATTTCCTTATTCACAATCTGGGCC
TTCATTCTCCACTAGTGTGCTATCAATTCCAAGAAAAAAGCCAGCGAAGCTTGATGATGT
TCGATCCAATGGTTGGCTTGATGCAATGAAGTCGTCTTCACCTCCTAGGAAGAAGATTCT
GAAGGATGTTAACATTGATGTTTCTTCTGATGATGCTGATGTTACTTACCTTTCTTGGAT
GATGAAGTATCCATCAGCTCTCAACTGCTTTCAGCAAATTATGAGGCAAGCAAGGAATAA
ACAGATAGTGATTTTCTTAGATTATGATGGAACTCTTTCTCCTATCGTTGATGACCCTGA
CCGTGCTTTTATGTCCAATGAGATGCGTTCTGTTGTCAGTAATGTTGCAAAGTATTTTCC
AACAGCAATCATCAGTGGGAGAAGACGTGATAAGGTTTATGAGCTGGTAGGTCTAACAGA
ACTCTATTATGCCGGTAGCCATGGTATGGACATCATGCTGCCAATCAAGAATACATCGTC
TGCTAACGATTCAAATTGTATCAAAGATACTGACCAGCAGGGCAAGGAAGTCAATCTGTT
CCAGCCTGCGCGTAAATTTTTATCAATGATTGATGAGGTTTTTAAAACCCTTGTCGAGAA
AACTAAAGACATTAAGGGTGCAAAAGTTGAGCACCATAAGTTTTGTGCCTCTGTACATTA
CCGTAATGTAGATGAGAATAGTTGGTCTCTCATTGCACAATATGTCCATGATGTCTTGAA
AGACTACCCTCGGCTACGGCTAACTCATGGGCGAAAGGTTTTAGAGGTCCGTCCTGATAT
TGACTGGGACAAAGGAAAAGCAGTTGAATTTCTGCTGGAATCACTAGGTTTTAGTAACCC
CAGAGACGTGCTCCCAATATATATTGGAGATGATAGAACAGACGAAGATGCATTCAAGGT
ATTGAGGGGGAAATATAAAGGATATGGAATTCTTGTTTCAACTACCCCAAAAGAGAGCAA
TGCATCCTTTTCTCTCAAGGATACTTCACAGGTCTGGCCAACTTTTCGTTTACGGATGTT
AAAAAACGACAGGAAACTGAGAAATGCAGTTAATTTTGCGAAGCCGAATTTGATTTTCAA
GCCTCGCCGGTCGTTTCCTCTAATCCGAGCTTCCGCTGGCTTCTCCTCATCTCTCGATAC
AGGTTTGAGTACTGAATTGGATGCTGTAGCAAATCATAGTGAGATCGTTCCAGATACAGT
CATTTTCGATGATTTCGAGAAATTTCCTCCAACTGCTGGTACTGTAAGCTCTTCTCTGCT
CTTAGGCATATGTGGTCTACCTGATACAAAATTTAAGAGTGCTGTAGACAGAGCTTTATC
AGATTCTGAGTGTTATGGATTGGAGAGTTCTGATCTTCAGATGTCTTGTTTCTTCAACAA
GGCTTTAGCACACGTTGGTGGTGATCTAGCAAAGCTTGTGCCTGGTCGAGTTTCTACTGA
AGTGGATGCTCGCCTCGCATACGACACACATGGCATTGTGCGAAAGGTGCATGACCTTTT
GAAAGCCTATACCGAAATTGAAGTGCCTCCAGAAAGATTGCTGTTCAAAATTCCTGCAAC
TTGGCAAGGTTATCCTTTCTCATTTGTCAGTGTTTATCTTTCTTGTAGGGAATTGAGGCA
TCAAGGGTGCTCGAAGCTGAAGGATTGGTCTCGCAATCACACTGGTGACTCTGAAGTTGA
AAGTGCTCTTAGAAGAGGAGAAGACCCAGGGTTGGCTTTGGTAACAAAAACTTATAACTA
CATCCACAAGTATGGGCACAAAACAAAGCTGATGGCTGCTGCAGTACGGAACAAGCAGGA
TGTCTTCAACCTTTTGGGGGTTGATTACATTATTACCCCACTGAAGGTATTGCAGTCTCT
TAAAGAATCTGTGACCCTACCTGATGAGAAGTACTCATTTACAAGAAGATTATCTCCACA
GTCAGCAGCTGCCTTCAATTTCACTCAAGATGAGCTTCAAAAGTGGGATCAGTATAGCTT
TTCCTCGGCTATGGGTCCTGCATCAGTGGAGCTCCTCACTATTGGACTGGATGGGTATAT
TAATCAGGCTAAGCGGGTTGAAGAGTTGTTTGGCAAGATATGGCCACCACCAAATGTATG
AAAAGTGCAACATGCAACTGCAGGATGTTTGTGTTTTCGTGAAATGATATATGTTAGCTT
TTCTTAGTTTTTTAACCTTGAACAGAGTCTTGAACCCACCTACCATCAAGGCTTAAGTGG
AGTTTCACACACTGTGTGGGTTTACTTCTCACTGTCCTTCCCGGCATCTTCACTGAAAAG
AAACTTTTAAGAACTCATCTAGCTTTTCGGGTTCCTTTTCTTGTATTTCTTCCAATATTA
ATGTTTGAATAGTGGCCAGGTACTACTCTGATGATGTTTAATAGCTTTGGCATTTTCATA
CATTTCATTGGAAATCCACCTTATTTTTGAAACAGTCTTCATGTAATTAGTTCCCAAAAT
ACCCAGTTTCAAATTTCTACGTAGCAACAGGAACACAAGTATTGGAGGAATCTTGGTTTA
TGCTTACATTAAAGGGCAA