Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g078570.2.1
CDS Infomation

Pentatricopeptide repeat superfamily protein, putative (AHRD V3.3 *** A0A061G554_THECC)
Sequence

ATGCATGCAAAGCTATGCCGAAAATTCATCAACTTTGAACTAGTCAAGAAATGCTCTGTG
CAGCTACTAAGCAAAAGGCAGCAAAATTGTTTCTTCTCTAAGTACTTCAGCAGCACTATA
AAACCCCATCAAGAAGATGAATTCAATTCAAAAATCATTTTTATTTCCAATCAGGCACAA
ACTGAAATTAGTTCTGAAATCGCCCTGTTTAAGTATTTTCAAATCTTGAATTCTGGTTCG
AACCCTAGTGCTTATTCTCTGGTTAATTTGATCCGTTCATGTACCAATCTTGGTTGGTTT
TCTCATGGTGAGCAGCTTCATTGCTGCATTTTAAAATCTGGGTATGTCAGCAATGTCTTT
GTTGCTACAGCGTTGGTCAATTTCTATGTCAAATTTCAGCTTTTGGTTAATGCACAACAA
CTGTTCGACGAAATGACTGAACCAAATGTTGTTACTTGGAATACGTTGATATCGGGTTAT
GTTCGTTCTGGGAAGTTCACTGCTGCTCTCAACTTGTTTATTCAGCTGGAAAGATCGGAG
CTTTGTTCCGATTCGTACTCTTTTACAGCTGTTTTATCAGCTTGTGGATCAATTGGTTTA
GTACAGCTAGGGAAATTGATACATTCCAAGATTGTGAAATTTGGTGTGGAGTGCAGCATT
GTGGTCTCCAATTCTTTGATTGACATGTATGGAAAATGTAGCTCTGTAGAAGAATCGACG
AGGGTGTTTAATAGTATGATGGAGAAAGATACGATTTCTTGGAACTCAGTCATTGCAGCA
AATACAAGAAACAAGAGGCTTGATCAGGCATTTGATTTCTTGCGTCAAATGCCTGAACCT
GATACGGTGTCATACAACGAGGTAATTAGTGGCGTGGCACAGTTTGGTAACATAGAAGAT
GCTGTTGATATGTTATCAAGAATGCCAACCCCGAATTCATCTTCATGGAATTCGATAATA
ACAGGGTATGTTAACCGAGGCAGAGCAGAAGAAGCTCTGCTGTTTTTTCAAAACATGCAT
GTAGGTAATGTTCTGATGGATCAATTCACTTTTTCAAGTATATTGAGTGGCATTGCCAAT
ATAGCAGCTATAACTTGGGGGAAGTTGATCCATTGTTGCACAGTGAAGTATGGTGTGAAC
GAAACAGTTGTTGTTGGAACTGCTCTCGTTGACATGTATTCTAAATGTGGGCAAATGAAT
GAAGCTGACATTCTGTTTGGATGGCTCCCTGTCAAGAATCTGATAACTTGGAACACGATT
ATATCTGGATATGCTCATAATGGTAGTTCAGATGAAGTTATGCGGTTGTTTGAGCAGTTG
AAATCAGTGAAAGAGTTACAACCTGATGGTATTACATTCGTGAACGTCTTGGCTGCATGT
TGGCATAATAGAATGTCTTGTGAAGCTGCAAAAGACTATTTCGAACTAATGGTCAACGAT
TATGGTATCAGCCCAATGCCGGAACACTGCTCTTCAATGATTAAGCTCATGGGGCAAGAA
GGGGACGTGAGTAAGGCAGAGAAAATGATATATGAACTCAGATTTGAAAACTGTGGATTA
GTGTGGAAGGCAATACTGGGTGCTTCTGTCACTTGTGGGAATACAGAAATAGCAGAAGTG
GCAGCTGCAAAGGTGATAGAATTGGAAGGCGATAACGAGTTTGTTTATGTACTAATGTCT
AACATGTATGCATTGCATAAGAAGTGGATCGATGTTGGTGACATGAGGGAGAAGATGAAG
GAGAAAAGAGTGAAAAAAGAAGCTGGTCGGAGTTGGATTGAAGTGGAAAACTCAAATACA
GTTACATCTGTAAAATGA

Peptide Sequence

PEP ID

Solyc08g078570.2.1
PEP Infomation

Pentatricopeptide repeat superfamily protein, putative (AHRD V3.3 *** A0A061G554_THECC)
Sequence

MHAKLCRKFINFELVKKCSVQLLSKRQQNCFFSKYFSSTIKPHQEDEFNSKIIFISNQAQ
TEISSEIALFKYFQILNSGSNPSAYSLVNLIRSCTNLGWFSHGEQLHCCILKSGYVSNVF
VATALVNFYVKFQLLVNAQQLFDEMTEPNVVTWNTLISGYVRSGKFTAALNLFIQLERSE
LCSDSYSFTAVLSACGSIGLVQLGKLIHSKIVKFGVECSIVVSNSLIDMYGKCSSVEEST
RVFNSMMEKDTISWNSVIAANTRNKRLDQAFDFLRQMPEPDTVSYNEVISGVAQFGNIED
AVDMLSRMPTPNSSSWNSIITGYVNRGRAEEALLFFQNMHVGNVLMDQFTFSSILSGIAN
IAAITWGKLIHCCTVKYGVNETVVVGTALVDMYSKCGQMNEADILFGWLPVKNLITWNTI
ISGYAHNGSSDEVMRLFEQLKSVKELQPDGITFVNVLAACWHNRMSCEAAKDYFELMVND
YGISPMPEHCSSMIKLMGQEGDVSKAEKMIYELRFENCGLVWKAILGASVTCGNTEIAEV
AAAKVIELEGDNEFVYVLMSNMYALHKKWIDVGDMREKMKEKRVKKEAGRSWIEVENSNT
VTSVK*

Transcript Sequence

Transcript ID

Solyc08g078570.2.1
Transcript Infomation

Pentatricopeptide repeat superfamily protein, putative (AHRD V3.3 *** A0A061G554_THECC)
Sequence

ATGCATGCAAAGCTATGCCGAAAATTCATCAACTTTGAACTAGTCAAGAAATGCTCTGTG
CAGCTACTAAGCAAAAGGCAGCAAAATTGTTTCTTCTCTAAGTACTTCAGCAGCACTATA
AAACCCCATCAAGAAGATGAATTCAATTCAAAAATCATTTTTATTTCCAATCAGGCACAA
ACTGAAATTAGTTCTGAAATCGCCCTGTTTAAGTATTTTCAAATCTTGAATTCTGGTTCG
AACCCTAGTGCTTATTCTCTGGTTAATTTGATCCGTTCATGTACCAATCTTGGTTGGTTT
TCTCATGGTGAGCAGCTTCATTGCTGCATTTTAAAATCTGGGTATGTCAGCAATGTCTTT
GTTGCTACAGCGTTGGTCAATTTCTATGTCAAATTTCAGCTTTTGGTTAATGCACAACAA
CTGTTCGACGAAATGACTGAACCAAATGTTGTTACTTGGAATACGTTGATATCGGGTTAT
GTTCGTTCTGGGAAGTTCACTGCTGCTCTCAACTTGTTTATTCAGCTGGAAAGATCGGAG
CTTTGTTCCGATTCGTACTCTTTTACAGCTGTTTTATCAGCTTGTGGATCAATTGGTTTA
GTACAGCTAGGGAAATTGATACATTCCAAGATTGTGAAATTTGGTGTGGAGTGCAGCATT
GTGGTCTCCAATTCTTTGATTGACATGTATGGAAAATGTAGCTCTGTAGAAGAATCGACG
AGGGTGTTTAATAGTATGATGGAGAAAGATACGATTTCTTGGAACTCAGTCATTGCAGCA
AATACAAGAAACAAGAGGCTTGATCAGGCATTTGATTTCTTGCGTCAAATGCCTGAACCT
GATACGGTGTCATACAACGAGGTAATTAGTGGCGTGGCACAGTTTGGTAACATAGAAGAT
GCTGTTGATATGTTATCAAGAATGCCAACCCCGAATTCATCTTCATGGAATTCGATAATA
ACAGGGTATGTTAACCGAGGCAGAGCAGAAGAAGCTCTGCTGTTTTTTCAAAACATGCAT
GTAGGTAATGTTCTGATGGATCAATTCACTTTTTCAAGTATATTGAGTGGCATTGCCAAT
ATAGCAGCTATAACTTGGGGGAAGTTGATCCATTGTTGCACAGTGAAGTATGGTGTGAAC
GAAACAGTTGTTGTTGGAACTGCTCTCGTTGACATGTATTCTAAATGTGGGCAAATGAAT
GAAGCTGACATTCTGTTTGGATGGCTCCCTGTCAAGAATCTGATAACTTGGAACACGATT
ATATCTGGATATGCTCATAATGGTAGTTCAGATGAAGTTATGCGGTTGTTTGAGCAGTTG
AAATCAGTGAAAGAGTTACAACCTGATGGTATTACATTCGTGAACGTCTTGGCTGCATGT
TGGCATAATAGAATGTCTTGTGAAGCTGCAAAAGACTATTTCGAACTAATGGTCAACGAT
TATGGTATCAGCCCAATGCCGGAACACTGCTCTTCAATGATTAAGCTCATGGGGCAAGAA
GGGGACGTGAGTAAGGCAGAGAAAATGATATATGAACTCAGATTTGAAAACTGTGGATTA
GTGTGGAAGGCAATACTGGGTGCTTCTGTCACTTGTGGGAATACAGAAATAGCAGAAGTG
GCAGCTGCAAAGGTGATAGAATTGGAAGGCGATAACGAGTTTGTTTATGTACTAATGTCT
AACATGTATGCATTGCATAAGAAGTGGATCGATGTTGGTGACATGAGGGAGAAGATGAAG
GAGAAAAGAGTGAAAAAAGAAGCTGGTCGGAGTTGGATTGAAGTGGAAAACTCAAATACA
GTTACATCTGTAAAATGA