Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g078500.3.1
CDS Infomation

auxin canalization protein (DUF828) (AHRD V3.3 *** AT4G17350.1)
Sequence

ATGGAGGAAAACTATCTTTTGGGGTGGAAGAAGAATAATGATTCAGATAATTGGCTTATG
AGTGTTGAAGAAGATGAAGAAATGGATGTAGAATTGCCTTCTGTTCATCAACCACAAACA
CCAATGGAACCAATGGATTTTTTGTCAAGATCATGGAGTCTATCTGCTTCTGAATTATCA
AAAGCTCTTGCTAAAAATCAGAAACACTATAGTTTTGAAAGGAAATTTAGTGTGATTAAT
GAATCACTTTCTCCACCTCCACAACTACCAGAGACCAAGATGTTGAATTCACAAAATGGG
CGAAAAGCCGGAGGGATTGGAAGGTGGTTCCATCACAAGGATTCTAACAATAACTCAGTC
AAGAAGAAAGAAAAGGCACGCCTAGAAAACGCGCATATGCACACTGTCCTATCCATAGCA
GGACTAGCTGCAGCATTGGCTGCAGCAGCAGCAGCAGAGAACTCAAACGGTTCGAGTTCA
AAGATGAGCACGGCTTTAGCATCAGCTACTGAACTCTTGGCCTCACATTGCCTTGAAATG
GCTGAATCAGCCGGGGCGGATCATGATCGTGTAGCCTCAGTTGTTAGATCAGCTGTAGAC
ATACATAGTGCTAGTGATCTTGTCACACTAACAGCTGCAGCTGCCACAGCTTTGAGAGGA
GAAGCAGCTCTTAAGTCAAGATTACCAAAAGAAGCAAAGAGGAATGCATCAATAAGTCCA
TGTGACAGAAGCATGGTGGAAGCTCAAAGTTTTGCTGCTGTTTTCCCTAATGACATGGAT
GAACATGATTCTCCGTTTGCGGGTGAATTGCTGCATCTCACAAGAAAAGGTATGCAACGA
TGGAAACGCGTTTCTGTTTATATAAACAAAAAATCTCAGGTTGTGATCAAGTTGAAGAGT
AAACATGTTGGTGGAGCTTTTTCTAAGAATAACAAATGTGTAGTATATGAAGTGTGTGAT
GAAAGTGAACCATGGCTATTCAACAAAGAGATTGAAAGCCTAGATTTGTACCTTAGAGTA
AAGACAGCTCAGGGTCTTCTAGAGTTCAAGTGCAAGAGCAAAAGCCATAAACAAAAATGG
ATTGATGGAATTCAGAAGCTTCTAGATAAAACCAGTTTATATGAAGATACTGAAGGATCA
ATGACAATGTTGAGAATCAACAAAAGCTTTTAG

Peptide Sequence

PEP ID

Solyc08g078500.3.1
PEP Infomation

auxin canalization protein (DUF828) (AHRD V3.3 *** AT4G17350.1)
Sequence

MEENYLLGWKKNNDSDNWLMSVEEDEEMDVELPSVHQPQTPMEPMDFLSRSWSLSASELS
KALAKNQKHYSFERKFSVINESLSPPPQLPETKMLNSQNGRKAGGIGRWFHHKDSNNNSV
KKKEKARLENAHMHTVLSIAGLAAALAAAAAAENSNGSSSKMSTALASATELLASHCLEM
AESAGADHDRVASVVRSAVDIHSASDLVTLTAAAATALRGEAALKSRLPKEAKRNASISP
CDRSMVEAQSFAAVFPNDMDEHDSPFAGELLHLTRKGMQRWKRVSVYINKKSQVVIKLKS
KHVGGAFSKNNKCVVYEVCDESEPWLFNKEIESLDLYLRVKTAQGLLEFKCKSKSHKQKW
IDGIQKLLDKTSLYEDTEGSMTMLRINKSF*

Transcript Sequence

Transcript ID

Solyc08g078500.3.1
Transcript Infomation

auxin canalization protein (DUF828) (AHRD V3.3 *** AT4G17350.1)
Sequence

AAAGGATAAATATATCTCCAAACTATTGTAAATGGATGCAGTTACCTTCCATTATATCTC
TCGATATTTTAAATCCTATAATAGATTAAATGCATCAATTGTATCGAAATTTGTTACATT
GTCCAGGTATATAAGTTATAAATAGTAGTTGGAATACATTATTATTTATGCACACTGTAT
AGCTCGTGTGCTTGTGTATAAATTAATCCAACTTTTTGTAACAACTGTTTTAACGTTAGG
AAACAAACGTCCGTTCAATCTGGACAATGTTTTCTTTGATTTAGTCAAATTAATCTTATT
TTATTATATAGTTTTTAATTAACGAATATTGCGTTGGAATACGTAAATAACACAATTTTT
TTTTTTCATGTCCTCATGAGACCAAGTGTGCCTATGTTAGTTATCATGTACCTCTGTTGT
TTGCTTTGTTGTCTCTCCTATATATAAACTCAATCTACTACTAAAGCTGAGACCAAAGTT
TTTATGTTCTTTTTTCTTCTAATATTAGTGAGTGCATACAATCCTCACATTTGTTAAAAG
GAGAAGTTATCTAAAGAGAGTTGTTATGGAGGAAAACTATCTTTTGGGGTGGAAGAAGAA
TAATGATTCAGATAATTGGCTTATGAGTGTTGAAGAAGATGAAGAAATGGATGTAGAATT
GCCTTCTGTTCATCAACCACAAACACCAATGGAACCAATGGATTTTTTGTCAAGATCATG
GAGTCTATCTGCTTCTGAATTATCAAAAGCTCTTGCTAAAAATCAGAAACACTATAGTTT
TGAAAGGAAATTTAGTGTGATTAATGAATCACTTTCTCCACCTCCACAACTACCAGAGAC
CAAGATGTTGAATTCACAAAATGGGCGAAAAGCCGGAGGGATTGGAAGGTGGTTCCATCA
CAAGGATTCTAACAATAACTCAGTCAAGAAGAAAGAAAAGGCACGCCTAGAAAACGCGCA
TATGCACACTGTCCTATCCATAGCAGGACTAGCTGCAGCATTGGCTGCAGCAGCAGCAGC
AGAGAACTCAAACGGTTCGAGTTCAAAGATGAGCACGGCTTTAGCATCAGCTACTGAACT
CTTGGCCTCACATTGCCTTGAAATGGCTGAATCAGCCGGGGCGGATCATGATCGTGTAGC
CTCAGTTGTTAGATCAGCTGTAGACATACATAGTGCTAGTGATCTTGTCACACTAACAGC
TGCAGCTGCCACAGCTTTGAGAGGAGAAGCAGCTCTTAAGTCAAGATTACCAAAAGAAGC
AAAGAGGAATGCATCAATAAGTCCATGTGACAGAAGCATGGTGGAAGCTCAAAGTTTTGC
TGCTGTTTTCCCTAATGACATGGATGAACATGATTCTCCGTTTGCGGGTGAATTGCTGCA
TCTCACAAGAAAAGGTATGCAACGATGGAAACGCGTTTCTGTTTATATAAACAAAAAATC
TCAGGTTGTGATCAAGTTGAAGAGTAAACATGTTGGTGGAGCTTTTTCTAAGAATAACAA
ATGTGTAGTATATGAAGTGTGTGATGAAAGTGAACCATGGCTATTCAACAAAGAGATTGA
AAGCCTAGATTTGTACCTTAGAGTAAAGACAGCTCAGGGTCTTCTAGAGTTCAAGTGCAA
GAGCAAAAGCCATAAACAAAAATGGATTGATGGAATTCAGAAGCTTCTAGATAAAACCAG
TTTATATGAAGATACTGAAGGATCAATGACAATGTTGAGAATCAACAAAAGCTTTTAGAC
TAACTTAGTTTTTCACTTTTTGTGTTATTTTAATGTATAAAAATGTTTGAGATAGTTCTT
GGTTTGTCTGTCTTATGATACTTCAGATGTAAGTTGTACTTACTAATTGGAGTTAGTATC
TAATATATTGGCAGTAAGACAGATCTTGTTTGTAAGAATTTTGTAAATTCACCTAAAGAC
TCATTATTCCAAACTTAATAGAATTTTGCAAGAAAGAACTCATTCTCCTGGACTTTTTCT
TGTTTATATTCAATTTCCCACTTCATCTAGTTAAATAGTAATATTATGGTTCGAGAGGAA
GTAGCAGTTGCTACTCGAATACTACAGTGGAAGTGTGTTGAATCAAGAACATATAGTAAA
AGATGCTTTATTCTGTCTCCACTTATGAAAGGGCAAGTTGACACGATAGGCATTGTGATG
CGAAGAGCTTTACTTGGAGAAACTAAAGGAACATGTATCACACGTATATAATCTAAAGAG
CTCTACATGAATATTGTACCATAAAGGGGATTCACGAAGCTTTTCCTCACATTATATTAA
TGGAGCAAACTCTATCAATTTGTTATCATAATTATGTAAAGAGGAGCAAAGAGACAATGA
ATGAGGGATGAAATGGCTTAAAACATGAGAAGGACAACCATCTGAGGTGTAATTTAAATC
AAACTTAAAAACAAGATGAAAATTTGACCCTAAAAGGAATTTGAATTTCATCACCATAGG
GTCATACAATAACATAATTCAAATGGCATGCACTAAAACATAGTTCGAGCCCTGAAAATG
GAAAAATCCCTAATAGCACGGAAATTTGAATTAATCGAGACAGTGGGAATCAGATACCAC
CAGATGATTAGTACCCAAAAACATAATTCAAATGACAAAAGGTTTAAAAGTTCTATAACA
ATTGAAAGCAGCTTTGAGGCACTTTTGATATCAAAGAACAGAATTTGGAACTTGTACAAA
TATCTGTTGCATGTGATAAGATGGAAACAGATATCAAGACAGTGTCTTAAAAATTGGAAT
TTTAAAACATGAATTCAGATGAAACCTCTTTATTTCTCTTTCCTTTTTCCAGATGAAACA
CCTTCTGTGTCTTTACTTCTCGGAGTGGCCTGTGTGGAAGTTTTGCTTGGATAACTGAGT
GATAACGATGATATCGATGATCACCCGAATGATGGACAGAATGGAAAGAGATGATGCAGC
TACCACAGCTTCCTTTTCAATCAGGACCTAAAAACAACAGTCTTGTTCGCCTCATATGGA
AAAATA