Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g077510.3.1
CDS Infomation

poly(U)-specific endoribonuclease-B protein (AHRD V3.3 *** AT4G17100.1)
Sequence

ATGGAAGGTTTAGTAAAAGGGTTGTTGAATGTGGCTTTGGGCAATGATGAAAATGAAAGA
GACAATCAAGATCGTGATGAACGGTCAAGATCCAGTTGGGCGCAGGTGGTGACAGGGGAG
CAGGAAGATGATGGGGTTAATACTGATAGTAGAACTGGATATAATATACAGGATGAGAGA
TATGGGAGAAATGAGGAATCAAGGCCTCACATGATGCCCCAAAAGCCGTCTCAAAACATG
CGAGCTTCACCTCAGGGGTACCAAAGAAATGAAGACGAGAGGAGAGACAATGTCAACCAA
AGCTGTTGGAACCAAAAGGAGGGCGAGGGAAACAGTGACGGCTGGGAGACTGTCCAGAAA
AAGCCTACTAAACGGCACCAACAGGTAAAAATGGATTCTTGGAACAATTACAAAAAGCCT
CTTGATGAGCAAGATTACTCCAATGAGGTTGAATATGGAGTTGACATGGAACCCTCCGAA
GAAGAGCTATCAGACTTATCGAAAGCTTGCAACAAGCTCTGGGAACTTGATCTTAACCGC
TTAGTTCCAGGGAAAGATTACCAGATTGAGTGTGGTGAAGGGAAAAAGGTGTACAATAAG
GATGATATGGCAGAAGGGTGCTTATTTTCCTGGCTGAATGACGACGTATTTAACAAGCCT
TCTTATTCTCGTTTCTGTTCCCTTTTGGATAATTATAATCCAAATCAGGGTGTTAAGGAG
AATGTAACACCTGAAGAAAAGCGAGAACAAACAGCATTCATAGAAGAGATCAGTAGAACC
GCACCAATTAAATATCTGCACAAGTATCTGTCATTGAAAGGCATAATTTCTGGTGATTAT
GAAGAACTTAAGAGAATGTTGACACGTCTCTGGTTTGACCTTTATAGTCGAGGTGGTACA
TCCGCTAGCTCTTCAGCTTTTGAACATGTTTTTGTTGGAGAGATTAAGGAACGCGGGGAG
AAAGAGGTGTCTGGATTTCACAACTGGCTTCAGTTCTATTTAGAGGAAGCTAAGGGCAAT
GTTGACTATCAAGGATATATTTTCCCCCGAAGGCGTGGAGAGATTCCCGACTCAGAAACT
CAACTACTCACTATACAGTTTGAATGGAACGGTGTCCTCAAATCTGTGTCAAGCAGTTTG
ATTGGAGTTAGCCCTGAATTTGAAGTTGCCATCTACACTATCTGTTACTTTGTTGGAGGG
GAGGAAAACCACGTCGAGATTGGCCCATACCCTGTTAATATTAAATGTTATCGATTGGGA
GATAGCATTGGCTCTGCTTTCCCTGTTGCTGAATGTTGA

Peptide Sequence

PEP ID

Solyc08g077510.3.1
PEP Infomation

poly(U)-specific endoribonuclease-B protein (AHRD V3.3 *** AT4G17100.1)
Sequence

MEGLVKGLLNVALGNDENERDNQDRDERSRSSWAQVVTGEQEDDGVNTDSRTGYNIQDER
YGRNEESRPHMMPQKPSQNMRASPQGYQRNEDERRDNVNQSCWNQKEGEGNSDGWETVQK
KPTKRHQQVKMDSWNNYKKPLDEQDYSNEVEYGVDMEPSEEELSDLSKACNKLWELDLNR
LVPGKDYQIECGEGKKVYNKDDMAEGCLFSWLNDDVFNKPSYSRFCSLLDNYNPNQGVKE
NVTPEEKREQTAFIEEISRTAPIKYLHKYLSLKGIISGDYEELKRMLTRLWFDLYSRGGT
SASSSAFEHVFVGEIKERGEKEVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGEIPDSET
QLLTIQFEWNGVLKSVSSSLIGVSPEFEVAIYTICYFVGGEENHVEIGPYPVNIKCYRLG
DSIGSAFPVAEC*

Transcript Sequence

Transcript ID

Solyc08g077510.3.1
Transcript Infomation

poly(U)-specific endoribonuclease-B protein (AHRD V3.3 *** AT4G17100.1)
Sequence

TTCCCTTTTGTTGATTTGATCAACAATGGAAGGTTTAGTAAAAGGGTTGTTGAATGTGGC
TTTGGGCAATGATGAAAATGAAAGAGACAATCAAGATCGTGATGAACGGTCAAGATCCAG
TTGGGCGCAGGTGGTGACAGGGGAGCAGGAAGATGATGGGGTTAATACTGATAGTAGAAC
TGGATATAATATACAGGATGAGAGATATGGGAGAAATGAGGAATCAAGGCCTCACATGAT
GCCCCAAAAGCCGTCTCAAAACATGCGAGCTTCACCTCAGGGGTACCAAAGAAATGAAGA
CGAGAGGAGAGACAATGTCAACCAAAGCTGTTGGAACCAAAAGGAGGGCGAGGGAAACAG
TGACGGCTGGGAGACTGTCCAGAAAAAGCCTACTAAACGGCACCAACAGGTAAAAATGGA
TTCTTGGAACAATTACAAAAAGCCTCTTGATGAGCAAGATTACTCCAATGAGGTTGAATA
TGGAGTTGACATGGAACCCTCCGAAGAAGAGCTATCAGACTTATCGAAAGCTTGCAACAA
GCTCTGGGAACTTGATCTTAACCGCTTAGTTCCAGGGAAAGATTACCAGATTGAGTGTGG
TGAAGGGAAAAAGGTGTACAATAAGGATGATATGGCAGAAGGGTGCTTATTTTCCTGGCT
GAATGACGACGTATTTAACAAGCCTTCTTATTCTCGTTTCTGTTCCCTTTTGGATAATTA
TAATCCAAATCAGGGTGTTAAGGAGAATGTAACACCTGAAGAAAAGCGAGAACAAACAGC
ATTCATAGAAGAGATCAGTAGAACCGCACCAATTAAATATCTGCACAAGTATCTGTCATT
GAAAGGCATAATTTCTGGTGATTATGAAGAACTTAAGAGAATGTTGACACGTCTCTGGTT
TGACCTTTATAGTCGAGGTGGTACATCCGCTAGCTCTTCAGCTTTTGAACATGTTTTTGT
TGGAGAGATTAAGGAACGCGGGGAGAAAGAGGTGTCTGGATTTCACAACTGGCTTCAGTT
CTATTTAGAGGAAGCTAAGGGCAATGTTGACTATCAAGGATATATTTTCCCCCGAAGGCG
TGGAGAGATTCCCGACTCAGAAACTCAACTACTCACTATACAGTTTGAATGGAACGGTGT
CCTCAAATCTGTGTCAAGCAGTTTGATTGGAGTTAGCCCTGAATTTGAAGTTGCCATCTA
CACTATCTGTTACTTTGTTGGAGGGGAGGAAAACCACGTCGAGATTGGCCCATACCCTGT
TAATATTAAATGTTATCGATTGGGAGATAGCATTGGCTCTGCTTTCCCTGTTGCTGAATG
TTGAATGTCACACACATCATTCTGTGATCTCCAAAACTGAACAAAATATGTTTGTGAGAC
ATTTACCATTTGTTTAAGAAACATTCTTGTTTGTATTACCCGCGCTTCTATTGCTGTCAT
ATTCGAACCGCTGGTGAAATGAAATGCTGAATATTGTTCTGTTCTAACATAAAGATTGTT
GCTCAGCAGTGAATACTTTGGGAATAACT