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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g077030.3.1
CDS Infomation

AT hook motif DNA-binding family protein (AHRD V3.3 *** AT4G17950.1)
Sequence

ATGGATTCTCAAGAATCCCAAGCGGGTCACCACCAAAATCAACACCATCATCAACCCCAA
CACCCCCAATTTCATCACCAACAGCAACATGGTCATGGCCATGGCCATGGCCATCATCCC
ATGATGATGGCAAGACCACAACACCATCAGCTTCAACAGCTTCAACAGCAGCATCACCAA
CATCAGCAGCAAGCTAACACCTTTGGTTTACCTAACAATGTTCCAACACATAACAACAAC
AATTCTGCTATGATGCAACAGCTTCAGCAACACCAGCAGCAAAATTCTGGTTTTCCTTTT
AATTCTGTGGTTAATACGGCTTCTGCGGCGGTGGCGGCGCCTCAACATAATCTTGATTAC
TCAGATGCGTCATCTCCTAGGGCTACTGGATTCAGCATTGAGCCTGCTAGGAAAAAAAGG
GGCCGACCCAGGAAGTATTCACCTGATGGTAACATCGCTTTGGGTCTCTCGCCTACTCCT
GTTACCCCGATTTCATCTGGGGTGCCTCCTACAGATTCCGGAAGCGGTGGCGGTGGTGAT
GCGGAGGGTCCTTCTTCCGAGAATCCTTCGAAAAAGGCCCGAGGAAGGCCTCCTGGCTCT
GGAAAGAAACAGCTAGATGCTTTAGGTGCAGCTGGAGTTGGGTTTACACCTCATGTGATC
ACAGTGAATGTTGGGGAGGACATAGCTTCAAAGATAATGGCTTTCTCCCAGCAAGGGCCG
CGTACTGTTTGTATTCTATCTGCAAATGGAGCCATCTGTAACGTCACCCTTCGCCAACCA
GCAATGGGGGGTGGCACTATTAATTACGAGGGCCGATATGAGATCATCTCATTGACAGGT
TCCTTCATGCAGTCGGAGAATAATGGCAGCAGTGGACCAAGTGGTCTGAGTGTGTCACTG
GCGGGGGCAGATGGTAGAGTAATGGGTGGTGGAGTTTCAGGAGTGCTTATGGCTGCCACA
CCAGTGCAGGTAATTGTGGGTAGCTTCCTTGCTGAAGGGAAAAAGCCAAAGTCTAAGGTG
CCATCTTCGACACCACCATCCAATATGTTGAATTTTGGTGCTCCTGCCACAGGGGAGAGC
CCTCCTTCTCAAGGTGATGCCTCAAGTGACTCGTCTGAGGAAAATGGCGACAGTCCTTTC
CAACATGAATCAGGACCTTATGGTAACGCTGGCCAACCAATGCATGGTATGTCAATGTAT
GCAAATATGGGCTGGCCAAAATCGCTGTGA

Peptide Sequence

PEP ID

Solyc08g077030.3.1
PEP Infomation

AT hook motif DNA-binding family protein (AHRD V3.3 *** AT4G17950.1)
Sequence

MDSQESQAGHHQNQHHHQPQHPQFHHQQQHGHGHGHGHHPMMMARPQHHQLQQLQQQHHQ
HQQQANTFGLPNNVPTHNNNNSAMMQQLQQHQQQNSGFPFNSVVNTASAAVAAPQHNLDY
SDASSPRATGFSIEPARKKRGRPRKYSPDGNIALGLSPTPVTPISSGVPPTDSGSGGGGD
AEGPSSENPSKKARGRPPGSGKKQLDALGAAGVGFTPHVITVNVGEDIASKIMAFSQQGP
RTVCILSANGAICNVTLRQPAMGGGTINYEGRYEIISLTGSFMQSENNGSSGPSGLSVSL
AGADGRVMGGGVSGVLMAATPVQVIVGSFLAEGKKPKSKVPSSTPPSNMLNFGAPATGES
PPSQGDASSDSSEENGDSPFQHESGPYGNAGQPMHGMSMYANMGWPKSL*

Transcript Sequence

Transcript ID

Solyc08g077030.3.1
Transcript Infomation

AT hook motif DNA-binding family protein (AHRD V3.3 *** AT4G17950.1)
Sequence

ACCTCTTTCCTCAGTTTATACTTTTTCTCACTTCAGTGAACAGAAACAGTAAAGAACAAA
ATCACAACAGCATTCTTGAAAAAAAGGGTTTTTTTTTTTGAAGAACAATTCTCTGTTTTC
ATGGATTCTCAAGAATCCCAAGCGGGTCACCACCAAAATCAACACCATCATCAACCCCAA
CACCCCCAATTTCATCACCAACAGCAACATGGTCATGGCCATGGCCATGGCCATCATCCC
ATGATGATGGCAAGACCACAACACCATCAGCTTCAACAGCTTCAACAGCAGCATCACCAA
CATCAGCAGCAAGCTAACACCTTTGGTTTACCTAACAATGTTCCAACACATAACAACAAC
AATTCTGCTATGATGCAACAGCTTCAGCAACACCAGCAGCAAAATTCTGGTTTTCCTTTT
AATTCTGTGGTTAATACGGCTTCTGCGGCGGTGGCGGCGCCTCAACATAATCTTGATTAC
TCAGATGCGTCATCTCCTAGGGCTACTGGATTCAGCATTGAGCCTGCTAGGAAAAAAAGG
GGCCGACCCAGGAAGTATTCACCTGATGGTAACATCGCTTTGGGTCTCTCGCCTACTCCT
GTTACCCCGATTTCATCTGGGGTGCCTCCTACAGATTCCGGAAGCGGTGGCGGTGGTGAT
GCGGAGGGTCCTTCTTCCGAGAATCCTTCGAAAAAGGCCCGAGGAAGGCCTCCTGGCTCT
GGAAAGAAACAGCTAGATGCTTTAGGTGCAGCTGGAGTTGGGTTTACACCTCATGTGATC
ACAGTGAATGTTGGGGAGGACATAGCTTCAAAGATAATGGCTTTCTCCCAGCAAGGGCCG
CGTACTGTTTGTATTCTATCTGCAAATGGAGCCATCTGTAACGTCACCCTTCGCCAACCA
GCAATGGGGGGTGGCACTATTAATTACGAGGGCCGATATGAGATCATCTCATTGACAGGT
TCCTTCATGCAGTCGGAGAATAATGGCAGCAGTGGACCAAGTGGTCTGAGTGTGTCACTG
GCGGGGGCAGATGGTAGAGTAATGGGTGGTGGAGTTTCAGGAGTGCTTATGGCTGCCACA
CCAGTGCAGGTAATTGTGGGTAGCTTCCTTGCTGAAGGGAAAAAGCCAAAGTCTAAGGTG
CCATCTTCGACACCACCATCCAATATGTTGAATTTTGGTGCTCCTGCCACAGGGGAGAGC
CCTCCTTCTCAAGGTGATGCCTCAAGTGACTCGTCTGAGGAAAATGGCGACAGTCCTTTC
CAACATGAATCAGGACCTTATGGTAACGCTGGCCAACCAATGCATGGTATGTCAATGTAT
GCAAATATGGGCTGGCCAAAATCGCTGTGAAAACACTTTTTCTGTGTCGACATGAAGTTG
CCAAGGGTTTTCCCCTTGCCAACGCTAACAGGGCAGAGTATAGGCGCGTTTCTTGATTTC
TCAACTTGAGCTTATTTTCCTTATTTTTCTCCCCGCTTCGATCCTCCCCTCTTTCCAGTA
TGTAGTTAAGGTAAAATGCTATATGGCTGATTTACAGAAATCCATTTTCATGGTTTCTTT
GGCACACTATGGTATTAGTATTAGTAGTAGTAGTATATGTTTAGGTGATGTTTGGTTGGA
TATTGTTTTACTTCCAGATGGTTAACTTTTAGGAATTATTAGATTGGATAGAAATTTCTT
CTAAATGAATGGAGTATTTTCTTCACTT