Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g075490.3.1
CDS Infomation

9-cis-epoxycarotenoid dioxygenase, putative (AHRD V3.3 *** B9S1S9_RICCO)
Sequence

ATGGATGCTTTAAAACCTATTGAACCATCATTTCCCTCTTTTATCTTCAATGCATTCGAT
GATTTCGTAAATACTTTTATTGATCCACCTAGGAAATCGTCTGTTGATCCAAGGTATGTT
CTCTCTAACAACTTCGCTCCAGTAGACGAACTTCCTCCTACCGAATGCGAAGTAGTGGAA
GGCTCCCTTCCACCTTGCCTAGATGGCGCGTATATTAGAAATGGACCTAACCCTCAATAT
CTTCCACGTGGACCTTACCATCTATTCGACGGTGATGGAATGCTTCACTCCATTAAAATT
TCCCAAGGTAAAGCTACGTTATGTAGTCGATTTGTCAAAACTTACAAGTACAACATCGAA
AATGAAGCCGGGTCACCCATTATTCCTAATGTGTTCTCCGGTTTCAACGGTCTAACCGCC
TCGGCCGCGCGTGGTGCACTCACCGCGGCCCGAGCTATTGCGGGACAGTTTAATCCCGCA
AACGGTATAGGCCTTGCGAATACAAGCTTAGCTTTATTTGGAGGTAAACTTTTCGCCCTC
GGTGAATCTGATTTACCATATGAGGTAAAAATAGCCCCAAATGGTGACATTTTTACCCTC
GGCCGTCACGATTTTAACGGAAAGCTTTCTATGAGCATGACGGCACATCCGAAAATCGAC
CACGAAACTAACGAGGCTTTTGCTTTCCGTTACGGCCCGATACCTCCGTTTATAACTTAC
TTTCGGGTCAACCCGGATGGTACAAAAACCCAGGATGTACCCATATTCTCAATGACCCGC
CCCTCATTTCTTCACGACTTCGCAATCACAAAAAAATACGCGATATTTTCGGACATACAA
ATTGGAATGAATCCAATTGATTTACTCACCGGTGGTTCACCGGTGGGTACTGACTCGGGG
AAAATTCCCCGAATTGGTGTGATACCACGTTACGCCAAAGATGAGTCGGAAATGAGGTGG
TTCGATGTATCAGGATTTAATATTGTACACGCGATAAACGCGTGGGATGAGGATGGAGGT
GATACGATAGTGTTGATCGCGCCGAATATATTATCGGTGGAACATACACTAGAGAGGATG
GACATGATACATGCAAGTGTTGAGAAAGTGAAAATAAATTTGAAGACAGGAATGGTGAGC
AGACATCCAATTTCTACAAGAAATCTTGATTTTGGAGTCATCAATCCAGCTTATGTTGGA
AAAAAGAACAAGTACGTATATGCAGCCATTGGGGGTCCTATGCCAAAAGTAATAGGGATA
GCAAAATTAGACGTATCCGTAGCAGAAATTGATCGTCGCGATTGCATCGTGGCATGTCGT
ATATTTGGAAAAGATTGCTATGGTGGTGAACCATTTTTCGTGCCTAAAAATCCTTCGATT
GATGAAGACGATGGCTACGTGGTGTCATACGTACACAATGAGAAGACAGGGGAATCAAAT
TTTTTGGTCATGGATGCAACATCACCTAATCTTGACATTGTGGCTAATGTCAAATTGCCT
CGTCGTGTGCCTTACGGTTTCCATGGACTTTTCGTGAGTGAAAATGATCTTATGAAGCTA
TAA

Peptide Sequence

PEP ID

Solyc08g075490.3.1
PEP Infomation

9-cis-epoxycarotenoid dioxygenase, putative (AHRD V3.3 *** B9S1S9_RICCO)
Sequence

MDALKPIEPSFPSFIFNAFDDFVNTFIDPPRKSSVDPRYVLSNNFAPVDELPPTECEVVE
GSLPPCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISQGKATLCSRFVKTYKYNIE
NEAGSPIIPNVFSGFNGLTASAARGALTAARAIAGQFNPANGIGLANTSLALFGGKLFAL
GESDLPYEVKIAPNGDIFTLGRHDFNGKLSMSMTAHPKIDHETNEAFAFRYGPIPPFITY
FRVNPDGTKTQDVPIFSMTRPSFLHDFAITKKYAIFSDIQIGMNPIDLLTGGSPVGTDSG
KIPRIGVIPRYAKDESEMRWFDVSGFNIVHAINAWDEDGGDTIVLIAPNILSVEHTLERM
DMIHASVEKVKINLKTGMVSRHPISTRNLDFGVINPAYVGKKNKYVYAAIGGPMPKVIGI
AKLDVSVAEIDRRDCIVACRIFGKDCYGGEPFFVPKNPSIDEDDGYVVSYVHNEKTGESN
FLVMDATSPNLDIVANVKLPRRVPYGFHGLFVSENDLMKL*

Transcript Sequence

Transcript ID

Solyc08g075490.3.1
Transcript Infomation

9-cis-epoxycarotenoid dioxygenase, putative (AHRD V3.3 *** B9S1S9_RICCO)
Sequence

ATGGATGCTTTAAAACCTATTGAACCATCATTTCCCTCTTTTATCTTCAATGCATTCGAT
GATTTCGTAAATACTTTTATTGATCCACCTAGGAAATCGTCTGTTGATCCAAGGTATGTT
CTCTCTAACAACTTCGCTCCAGTAGACGAACTTCCTCCTACCGAATGCGAAGTAGTGGAA
GGCTCCCTTCCACCTTGCCTAGATGGCGCGTATATTAGAAATGGACCTAACCCTCAATAT
CTTCCACGTGGACCTTACCATCTATTCGACGGTGATGGAATGCTTCACTCCATTAAAATT
TCCCAAGGTAAAGCTACGTTATGTAGTCGATTTGTCAAAACTTACAAGTACAACATCGAA
AATGAAGCCGGGTCACCCATTATTCCTAATGTGTTCTCCGGTTTCAACGGTCTAACCGCC
TCGGCCGCGCGTGGTGCACTCACCGCGGCCCGAGCTATTGCGGGACAGTTTAATCCCGCA
AACGGTATAGGCCTTGCGAATACAAGCTTAGCTTTATTTGGAGGTAAACTTTTCGCCCTC
GGTGAATCTGATTTACCATATGAGGTAAAAATAGCCCCAAATGGTGACATTTTTACCCTC
GGCCGTCACGATTTTAACGGAAAGCTTTCTATGAGCATGACGGCACATCCGAAAATCGAC
CACGAAACTAACGAGGCTTTTGCTTTCCGTTACGGCCCGATACCTCCGTTTATAACTTAC
TTTCGGGTCAACCCGGATGGTACAAAAACCCAGGATGTACCCATATTCTCAATGACCCGC
CCCTCATTTCTTCACGACTTCGCAATCACAAAAAAATACGCGATATTTTCGGACATACAA
ATTGGAATGAATCCAATTGATTTACTCACCGGTGGTTCACCGGTGGGTACTGACTCGGGG
AAAATTCCCCGAATTGGTGTGATACCACGTTACGCCAAAGATGAGTCGGAAATGAGGTGG
TTCGATGTATCAGGATTTAATATTGTACACGCGATAAACGCGTGGGATGAGGATGGAGGT
GATACGATAGTGTTGATCGCGCCGAATATATTATCGGTGGAACATACACTAGAGAGGATG
GACATGATACATGCAAGTGTTGAGAAAGTGAAAATAAATTTGAAGACAGGAATGGTGAGC
AGACATCCAATTTCTACAAGAAATCTTGATTTTGGAGTCATCAATCCAGCTTATGTTGGA
AAAAAGAACAAGTACGTATATGCAGCCATTGGGGGTCCTATGCCAAAAGTAATAGGGATA
GCAAAATTAGACGTATCCGTAGCAGAAATTGATCGTCGCGATTGCATCGTGGCATGTCGT
ATATTTGGAAAAGATTGCTATGGTGGTGAACCATTTTTCGTGCCTAAAAATCCTTCGATT
GATGAAGACGATGGCTACGTGGTGTCATACGTACACAATGAGAAGACAGGGGAATCAAAT
TTTTTGGTCATGGATGCAACATCACCTAATCTTGACATTGTGGCTAATGTCAAATTGCCT
CGTCGTGTGCCTTACGGTTTCCATGGACTTTTCGTGAGTGAAAATGATCTTATGAAGCTA
TAAATATCGATATATTGATTAAATTATTTAAGATCTATGTATAATATGTATGTATATAAA
TGATATATAGGTTGATTCCTCTTTAAAATAGTATTGTATCACTTAGGGACAAATAAATTT
GAGGATG