Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g075480.3.1
CDS Infomation

9-cis-epoxycarotenoid dioxygenase, putative (AHRD V3.3 *** B9S1S9_RICCO)
Sequence

ATGATGTCAATCCCTTCGCCACCAAAAAGAGCACAAATACCCTCAAGAAAACCATCACTT
CCTTCGAATATCTTCAACGCATTTGACGATTTTGTGAATACTTACATTGATCCTCCTAGA
AAATCTTACGTTGATCCAAAATACGTACTTTCTAACAATTTCGCTCCAGTAGATGAGCTT
CCACCTACTGAATGCGAAGTAGTAGAAGGCTCCCTTCCACCTTGCCTAGATGGCGCGTAT
ATTAGAAATGGACCTAACCCTCAATATCTTCCACGTGGACCTTACCATCTTTTCGACGGT
GATGGAATGCTTCACTCCATTAAAATTTCCCAAGGTAAAGCTACGTTTTGTAGTCGATTT
GTCAAAACTTACAAATACAACATCGAAAATGAAGCCGGTTTTCAAATTATCCCTAACGTT
TTTTCCGGTTTCAACGGTATTATCCCCTCGGTCACACGTGGCGCTATTACCTTGGCCCGA
ATCATTACGAGACAGTTCAATCCCGCAGACGGTATAGGCCTTGCGAATACAAGCTTAGCT
TTATTCGGGGGTAAACTTTTTGCCCTCGGTGAATCTGATTTACCATATGCAGTAAAAATA
ACCTCAGACGGTGATATTATTACCCTTGGCCGTCATAATTTTAACGGAAAACTTGTCTGG
GGCATGACAGCTCATCCGAAAATCGACCCCGATACTAACGAGGCTTTTGCTTACCGTTAC
GGTCCGTTTCCGCCGTTTTTAATTTACTTTCGGGTCGACCCGAATGGTATAAAAACCGCA
GACGTGCCGATATTTTCAATTAAACGTCCAACATTGTTCCATGACATTGCAATCACAAAA
AAATACGCCATATTTTCGGACATACAAATAGGAATGAACCCGATCAAGTTCATACTCGCC
GGTGGTTCACCGGTGGGTATAAACTCGAGGAAAATCTCCCGACTTGGAGTGATTCCACGT
TATGCCAAGGGTGAATCGGAAATGAGGTGGTTTGATGTGCCAGGGTTTAATAATTTACAC
GCGATTAACGCGTGGGAAGAGGATGGAGGCGATACGATAGTATTAATTGCACCAAATATA
TTATCGGTAGAGCATACACTAGAAAGGATGGATATGATACATGGATGTGTTGAGAAAGTC
AAAATTAATTTGAATAGTGGGGTAGTGAGTAGACATCCAATTTCTACTAGAAATCTTGAT
TTTGGAGTCATAAATCCAACTTATGTTGGGAAGAAAAACAAGTATGTATATGCAGCGATT
GGGTACCCTCCACCTAAGTTATCAGGGATCGTAAAATTGGACGTATCGATCGCGGAAGTT
GATCGTCGCGATTGCATAGTGGCATGTAGGACGTTTGGAGAAGGTTGCTTTTGCGGTGAG
CCATTTTTCGTGGCGAAAAATAATTTGGGAGCTAACGAAGACGATGGCTACGTAATGTTG
TACGTGCATAATGAGAAGACAGAGGAATCAAATTTTTTGGTCATGGATGCAACATCACCT
AATCTTGATATTGTGGCTAATGTTAAATTGCCTCGTCGAGTTCCTTATGGTTTTCATGGG
ATTTTCGTAAGGGAAAGTGATCTTAATATGCTATAA

Peptide Sequence

PEP ID

Solyc08g075480.3.1
PEP Infomation

9-cis-epoxycarotenoid dioxygenase, putative (AHRD V3.3 *** B9S1S9_RICCO)
Sequence

MMSIPSPPKRAQIPSRKPSLPSNIFNAFDDFVNTYIDPPRKSYVDPKYVLSNNFAPVDEL
PPTECEVVEGSLPPCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISQGKATFCSRF
VKTYKYNIENEAGFQIIPNVFSGFNGIIPSVTRGAITLARIITRQFNPADGIGLANTSLA
LFGGKLFALGESDLPYAVKITSDGDIITLGRHNFNGKLVWGMTAHPKIDPDTNEAFAYRY
GPFPPFLIYFRVDPNGIKTADVPIFSIKRPTLFHDIAITKKYAIFSDIQIGMNPIKFILA
GGSPVGINSRKISRLGVIPRYAKGESEMRWFDVPGFNNLHAINAWEEDGGDTIVLIAPNI
LSVEHTLERMDMIHGCVEKVKINLNSGVVSRHPISTRNLDFGVINPTYVGKKNKYVYAAI
GYPPPKLSGIVKLDVSIAEVDRRDCIVACRTFGEGCFCGEPFFVAKNNLGANEDDGYVML
YVHNEKTEESNFLVMDATSPNLDIVANVKLPRRVPYGFHGIFVRESDLNML*

Transcript Sequence

Transcript ID

Solyc08g075480.3.1
Transcript Infomation

9-cis-epoxycarotenoid dioxygenase, putative (AHRD V3.3 *** B9S1S9_RICCO)
Sequence

ATGATGTCAATCCCTTCGCCACCAAAAAGAGCACAAATACCCTCAAGAAAACCATCACTT
CCTTCGAATATCTTCAACGCATTTGACGATTTTGTGAATACTTACATTGATCCTCCTAGA
AAATCTTACGTTGATCCAAAATACGTACTTTCTAACAATTTCGCTCCAGTAGATGAGCTT
CCACCTACTGAATGCGAAGTAGTAGAAGGCTCCCTTCCACCTTGCCTAGATGGCGCGTAT
ATTAGAAATGGACCTAACCCTCAATATCTTCCACGTGGACCTTACCATCTTTTCGACGGT
GATGGAATGCTTCACTCCATTAAAATTTCCCAAGGTAAAGCTACGTTTTGTAGTCGATTT
GTCAAAACTTACAAATACAACATCGAAAATGAAGCCGGTTTTCAAATTATCCCTAACGTT
TTTTCCGGTTTCAACGGTATTATCCCCTCGGTCACACGTGGCGCTATTACCTTGGCCCGA
ATCATTACGAGACAGTTCAATCCCGCAGACGGTATAGGCCTTGCGAATACAAGCTTAGCT
TTATTCGGGGGTAAACTTTTTGCCCTCGGTGAATCTGATTTACCATATGCAGTAAAAATA
ACCTCAGACGGTGATATTATTACCCTTGGCCGTCATAATTTTAACGGAAAACTTGTCTGG
GGCATGACAGCTCATCCGAAAATCGACCCCGATACTAACGAGGCTTTTGCTTACCGTTAC
GGTCCGTTTCCGCCGTTTTTAATTTACTTTCGGGTCGACCCGAATGGTATAAAAACCGCA
GACGTGCCGATATTTTCAATTAAACGTCCAACATTGTTCCATGACATTGCAATCACAAAA
AAATACGCCATATTTTCGGACATACAAATAGGAATGAACCCGATCAAGTTCATACTCGCC
GGTGGTTCACCGGTGGGTATAAACTCGAGGAAAATCTCCCGACTTGGAGTGATTCCACGT
TATGCCAAGGGTGAATCGGAAATGAGGTGGTTTGATGTGCCAGGGTTTAATAATTTACAC
GCGATTAACGCGTGGGAAGAGGATGGAGGCGATACGATAGTATTAATTGCACCAAATATA
TTATCGGTAGAGCATACACTAGAAAGGATGGATATGATACATGGATGTGTTGAGAAAGTC
AAAATTAATTTGAATAGTGGGGTAGTGAGTAGACATCCAATTTCTACTAGAAATCTTGAT
TTTGGAGTCATAAATCCAACTTATGTTGGGAAGAAAAACAAGTATGTATATGCAGCGATT
GGGTACCCTCCACCTAAGTTATCAGGGATCGTAAAATTGGACGTATCGATCGCGGAAGTT
GATCGTCGCGATTGCATAGTGGCATGTAGGACGTTTGGAGAAGGTTGCTTTTGCGGTGAG
CCATTTTTCGTGGCGAAAAATAATTTGGGAGCTAACGAAGACGATGGCTACGTAATGTTG
TACGTGCATAATGAGAAGACAGAGGAATCAAATTTTTTGGTCATGGATGCAACATCACCT
AATCTTGATATTGTGGCTAATGTTAAATTGCCTCGTCGAGTTCCTTATGGTTTTCATGGG
ATTTTCGTAAGGGAAAGTGATCTTAATATGCTATAA