Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g068230.3.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0B2SBT0_GLYSO)
Sequence

ATGGATGATTTTAGAAAAGAAAGGTCCAACTGCGAAAACTCTCGCAGGAAGTCAGGAATG
AAGACCCTTATCAGAAAAGAGTTTTTGCATCCATTCTCAATCAAGGAAAAAGATCTAGAG
GATAAGATGCCACTGCGACCAACACCAGAATCTAGCCTCTGTGCCTTCTGTGTGAATGGT
AATAGCTGTAGAACTGTTCGTGCAAGAACAAAACTGATGAACACTGTTTTAGAAAGAGGG
AGGCCCGAGGAAGCCCGGCTAACTTTTGATAGCTTGATTAAAGGAGGACACAAACCATCT
CTAATTACATACACTACCCTCCTAGCCGCTTTGACAGTTCAGAAGCGTTTTGATTATATC
CATTCCATAATGTCTGAAGTGCAAGAAAGTGGTATGAAGCCTGATCCAGTTTTCTTCAAT
GCTGTTGTTAATGCATTTTCTGAATCTGGGAACATGGAGGAAGCAATGAAAACTTTCTTG
CAAATGAAGGAGAGTGGGATAAAGCCTGCAATCAGCACTTTTAACACTTTGATCAAAGGG
TATGGAATTGCTGGAAAACCTGAAGAATCTATACAGATAATGGAGTTAATGTCGCGGGAA
GTTAATGTGAAACCCAATTTGAGGACATACAATGTACTTGTTAAAGCATGGTGTAGCAAA
AAGAATTTTACTGATGCATGGAATACTGTGGATAAAATGATAGCTTCTGGCTTACAACCA
GATGTTATCACTTACAATACAATAGCAGCAGCTTATTGTCAAAATCATCAAACTGAAAAA
GCTGAAGGAGTGATTTTAGAAATGCAAAGGAACAATGTGCACCCTAATGAAAGGACTTGT
AGCATCATTATAGCTGGATACTGTAAAGAAGGTGAACTGAAGGATGCCTTGAGGTTTGTC
TACACGATGAAGGATCTTGGAATGCATCCTAACCTTGTTATTTTCAATTCACTGATCAAA
GGTTTCCTTGACATGTCAGACAGCGACAGTGTTGATGAGGTTCTTACATTAATGGAAGAG
TTTGGTTCCAAACCTGATGTCATTACTTTCAGCACCATCATGAACGCCTGGGGCGCTGCT
GGATATATGGTTAAGTGCAGGGAGGTCTTTGATGACATGGTCAATGCTGGCATTCCACCT
GATGTCCATGCGTATAGCATTTTGGCCAAGGGTTATGTCCGTGCATTGGAACCAGAAAAA
GCAGAAGAGGTCCTGAATGACCTAATTAAATCTGGTAATCGTCCAAATGTTGTGATTTTC
ACCACTGTAATTAGCGGATGGTGCACTGCTGGTAGAATGGATTATGCCATGAGGATCTTC
GAGAAGATGTGTGACTCGGGAATATCTCCTAATCTGAAGGCTTTCGAAACTCTGGTATGG
GGTTATGCAGAAAATAAAAATCCTCGTAAAGCAGAAGAGGTAATCCAAATCATGGAAACA
TTCAATGTTCAACCTGAGAAAAGCACCCGTCTGCTTGTTGCAGAAGCCTGGCATGGTGTT
GGATTAGCTGAGGCAGCCAATGGAGTGTCCAACTCAGGTGAAAAGCAAAGGTCAACTAGC
AAACTCGATATGGAAGATGAAACAGAAGTGAAGAACTTAGAAAAGGTCTACCAGAAGGAT
GCTGTCCATCACTGTTATCCCAAATGTTTGCAGATACCCAATGAACTAATTAATGAACCA
AAGGGGGCAGTAACTGCGCTTAAAAGAAGTCGTTTGGTGCTAAGAGAAACTGAATTTTCG
TGTGATACTTTGTCTGCTGCAACAAGGTCATTGCATATTAGTTGTAGATTTGGAATGCGA
GCTCCTGTTATTTGCCAGAGACAATTCCAAGTGCAGCTTTGTGCATCTGGTCATGTTGGA
CACTCAAGTACAGCTGTGTTCTTGTACTGA

Peptide Sequence

PEP ID

Solyc08g068230.3.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0B2SBT0_GLYSO)
Sequence

MDDFRKERSNCENSRRKSGMKTLIRKEFLHPFSIKEKDLEDKMPLRPTPESSLCAFCVNG
NSCRTVRARTKLMNTVLERGRPEEARLTFDSLIKGGHKPSLITYTTLLAALTVQKRFDYI
HSIMSEVQESGMKPDPVFFNAVVNAFSESGNMEEAMKTFLQMKESGIKPAISTFNTLIKG
YGIAGKPEESIQIMELMSREVNVKPNLRTYNVLVKAWCSKKNFTDAWNTVDKMIASGLQP
DVITYNTIAAAYCQNHQTEKAEGVILEMQRNNVHPNERTCSIIIAGYCKEGELKDALRFV
YTMKDLGMHPNLVIFNSLIKGFLDMSDSDSVDEVLTLMEEFGSKPDVITFSTIMNAWGAA
GYMVKCREVFDDMVNAGIPPDVHAYSILAKGYVRALEPEKAEEVLNDLIKSGNRPNVVIF
TTVISGWCTAGRMDYAMRIFEKMCDSGISPNLKAFETLVWGYAENKNPRKAEEVIQIMET
FNVQPEKSTRLLVAEAWHGVGLAEAANGVSNSGEKQRSTSKLDMEDETEVKNLEKVYQKD
AVHHCYPKCLQIPNELINEPKGAVTALKRSRLVLRETEFSCDTLSAATRSLHISCRFGMR
APVICQRQFQVQLCASGHVGHSSTAVFLY*

Transcript Sequence

Transcript ID

Solyc08g068230.3.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0B2SBT0_GLYSO)
Sequence

CTTTTTAGGATGGAAAGTACTTTCATATTTGAATAACCTCTTTGGGAAAATTGTTACCCA
AACATAAAAAGAAAAGATTTTCATTCAAATTGTCTCTTTCAAAATTTGCAACCTTCCTTC
TCTCCAATCTCCACTCCTTATCTTTTGGAAGTTGGAGGGACAATATTCTTATGCAATCCA
TTTATACTTATTTGTGGATAAGATTTTTTTCAATAACAACTCTTTTTCTCTCATATAATA
ACAAGTGTAATAGTTGTAGCTCATGCAAATTAAGGTGTCAATCCCATAAATCCAACAAAG
GTACTAAAAAGACTTCACCTTTACCTTTTCTACTCCTTTTTCAAGAACTCAGCAATGCTA
AATTTGGTGTTTGATTATTGATTCTTGAATGTATTTTAAGGAAACTACATGGATGATTTT
AGAAAAGAAAGGTCCAACTGCGAAAACTCTCGCAGGAAGTCAGGAATGAAGACCCTTATC
AGAAAAGAGTTTTTGCATCCATTCTCAATCAAGGAAAAAGATCTAGAGGATAAGATGCCA
CTGCGACCAACACCAGAATCTAGCCTCTGTGCCTTCTGTGTGAATGGTAATAGCTGTAGA
ACTGTTCGTGCAAGAACAAAACTGATGAACACTGTTTTAGAAAGAGGGAGGCCCGAGGAA
GCCCGGCTAACTTTTGATAGCTTGATTAAAGGAGGACACAAACCATCTCTAATTACATAC
ACTACCCTCCTAGCCGCTTTGACAGTTCAGAAGCGTTTTGATTATATCCATTCCATAATG
TCTGAAGTGCAAGAAAGTGGTATGAAGCCTGATCCAGTTTTCTTCAATGCTGTTGTTAAT
GCATTTTCTGAATCTGGGAACATGGAGGAAGCAATGAAAACTTTCTTGCAAATGAAGGAG
AGTGGGATAAAGCCTGCAATCAGCACTTTTAACACTTTGATCAAAGGGTATGGAATTGCT
GGAAAACCTGAAGAATCTATACAGATAATGGAGTTAATGTCGCGGGAAGTTAATGTGAAA
CCCAATTTGAGGACATACAATGTACTTGTTAAAGCATGGTGTAGCAAAAAGAATTTTACT
GATGCATGGAATACTGTGGATAAAATGATAGCTTCTGGCTTACAACCAGATGTTATCACT
TACAATACAATAGCAGCAGCTTATTGTCAAAATCATCAAACTGAAAAAGCTGAAGGAGTG
ATTTTAGAAATGCAAAGGAACAATGTGCACCCTAATGAAAGGACTTGTAGCATCATTATA
GCTGGATACTGTAAAGAAGGTGAACTGAAGGATGCCTTGAGGTTTGTCTACACGATGAAG
GATCTTGGAATGCATCCTAACCTTGTTATTTTCAATTCACTGATCAAAGGTTTCCTTGAC
ATGTCAGACAGCGACAGTGTTGATGAGGTTCTTACATTAATGGAAGAGTTTGGTTCCAAA
CCTGATGTCATTACTTTCAGCACCATCATGAACGCCTGGGGCGCTGCTGGATATATGGTT
AAGTGCAGGGAGGTCTTTGATGACATGGTCAATGCTGGCATTCCACCTGATGTCCATGCG
TATAGCATTTTGGCCAAGGGTTATGTCCGTGCATTGGAACCAGAAAAAGCAGAAGAGGTC
CTGAATGACCTAATTAAATCTGGTAATCGTCCAAATGTTGTGATTTTCACCACTGTAATT
AGCGGATGGTGCACTGCTGGTAGAATGGATTATGCCATGAGGATCTTCGAGAAGATGTGT
GACTCGGGAATATCTCCTAATCTGAAGGCTTTCGAAACTCTGGTATGGGGTTATGCAGAA
AATAAAAATCCTCGTAAAGCAGAAGAGGTAATCCAAATCATGGAAACATTCAATGTTCAA
CCTGAGAAAAGCACCCGTCTGCTTGTTGCAGAAGCCTGGCATGGTGTTGGATTAGCTGAG
GCAGCCAATGGAGTGTCCAACTCAGGTGAAAAGCAAAGGTCAACTAGCAAACTCGATATG
GAAGATGAAACAGAAGTGAAGAACTTAGAAAAGGTCTACCAGAAGGATGCTGTCCATCAC
TGTTATCCCAAATGTTTGCAGATACCCAATGAACTAATTAATGAACCAAAGGGGGCAGTA
ACTGCGCTTAAAAGAAGTCGTTTGGTGCTAAGAGAAACTGAATTTTCGTGTGATACTTTG
TCTGCTGCAACAAGGTCATTGCATATTAGTTGTAGATTTGGAATGCGAGCTCCTGTTATT
TGCCAGAGACAATTCCAAGTGCAGCTTTGTGCATCTGGTCATGTTGGACACTCAAGTACA
GCTGTGTTCTTGTACTGAAGAGAGAAGGGGAGTTAATTTGTAAACCAGAATGCAGCTGGA
TGTCAAAGTAATGTGTCTTGTACATATAAAGAGTGACTTCAAATTGCTGATCTCTCTGGG
TACATGGATTTGTAAAGCTTTTACTGATCTTTTAACTTGAATTCCTTTTTGTCCATTGTA
TCTGTATACTGTGCAGCTGTATAAATCATATTTGGATATATGCAAAGTCCAGTTGTAAGT
GCACTGTTCGATCGTCAGTATTCTTACCTCCATGAATGACTCAAAATTGAAAGGGTTGAA
ACTTTATGTAGTTTGAATGTTCACTGAGAACTGAGAAGTATGTTAATTAGTCTATATTGG
GACTCTTACCACCACTCATTTAAGATGAGAAGACATGTGGA