Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g066810.3.1
CDS Infomation

Glycosyl hydrolase family 5 protein (AHRD V3.3 *** D7KPG3_ARALL)
Sequence

ATGCCATCAAAGCCACTAGAAAAAAAAATGGGGCAATCACCACCAACATCATTTTATAAT
AACATATTATTGTTGAGCATTATTGTTACTATTTTGATGTTAATGCCTCAATATTCACAT
GCAACACTTTCCACAAATTCAAGATGGATAGTGAATGAAGGAGGACAAAGAGTGAAATTA
TCTTGTGTTAATTGGGTGAGTCATTTGGAAGTCATGGTAGCAGAAGGACTAAGTAAACAA
CCAATTGACACTATCTCAAAATCCATTACTAATATGGGTTTTAATTGTGTTAGGCTTACT
TGGCCTCTTTTTTTGTTTACAAATGATTCTTTGTCTTCATTAAGTGTACGTCAATCCTTC
AATAATCTTGGCCTTGTTGAATCTATTGCTGGACTTCAAGTTAATAATCCCTCTATTCTT
GATTTATCTCTTCTCCAGGCTTATCAGGCAGTGGTGTCTGGCCTGGGAAATAACAATGTG
ATGGTCATATTAGACAATCACATCAGCAAGCCTGGTTGGTGCTGCAGTAACTTTGACGGT
AATGGCTTCTTCGGCGACCAATACTTTAACCCTGACCTTTGGGTACAGGGTCTTACCAAG
GTCGCAACCACATTCATCAACGTCACCAATGTCGTTGGTATGAGCTTAAGAAACGAACTT
CGTGGACCTAAACAAAATGTGAACGATTGGTACAGATATATGCAAAAAGGAGCTGAAGCG
GTACATGCAGCTAACCCTGACGTTCTAGTCATTCTCTCCGGCCTAAATTTTGATAAGGAT
CTCTCTTTCCTGCGCCAGAGGCCAATTAACTTGACTTTCTCTGGGAAGCTAGTGTTTGAG
ATTCATCGATATAGTTTCACAGATGGAAAATCGTGGGAAACAGGCAACGCGAATCAAGTT
TGTGGACAAGTTTTGAATGATATGATGAGCAGAGGTGGTTTTCTGTTAGATCAAGGGTAT
CCGTTGTTTGTGAGTGAGTTTGGGGCGGACCAAAGGGGCACCAATGTAAATGACAATAGG
TATTTCAACTGTTTTCTGGGATTAGCAGCTGAACTTGACTTTGATTGGGCATTGTGGACA
CTTGTTGGAAGCTATTATTTAAGAGAAGGGGTTGTTGGACTCAATGAAGTCTATGGGGTT
ATGGACTGGAATTGGTGTGACATTAGAAACTCTAGCTTCCTCAATAGGATCTCCGCCGTC
CAATCTCCTTTCCAAGGGCCAGGATATAACGAGTCTCGCTCCCATAAGCTAATCTTCCAT
CCAATGACAGGGCTTTGTGTTCGACGAATTTCATTTCTCCAGCCATTGGAGCTTGGTCCA
TGCTCTGAATCCGACGCGTGGGACTATACTACAACCAAATCACTGACACTAACAGGAACT
TACTTTTGCCTACAAGCAGATAAATCTGGTCAGCCAGCAAAACTTGGCATAATGTGCACC
AATTCCAACTCGAAATGGCAAGCTATCTCAGACTCCAAGATGCATCTGTCTTCTAAGCTA
CAAGATGGCACTAGTCTTTGCTTAGATGTTGATTCCAAAAATGCTATTTTCACCAACCCT
TGCAAATGCTTGAGCAAAGATAAAACATGTGAGCCTGAAAGCCAATGGTTCAAAATCATC
GATAGCACCAGACAACAAAATAGTACGAAATCCTTTTTCCAGAGCGAGCATATTGTTCAA
TTTCTAGGAAATACTTTTAGCTACATCTTGTAA

Peptide Sequence

PEP ID

Solyc08g066810.3.1
PEP Infomation

Glycosyl hydrolase family 5 protein (AHRD V3.3 *** D7KPG3_ARALL)
Sequence

MPSKPLEKKMGQSPPTSFYNNILLLSIIVTILMLMPQYSHATLSTNSRWIVNEGGQRVKL
SCVNWVSHLEVMVAEGLSKQPIDTISKSITNMGFNCVRLTWPLFLFTNDSLSSLSVRQSF
NNLGLVESIAGLQVNNPSILDLSLLQAYQAVVSGLGNNNVMVILDNHISKPGWCCSNFDG
NGFFGDQYFNPDLWVQGLTKVATTFINVTNVVGMSLRNELRGPKQNVNDWYRYMQKGAEA
VHAANPDVLVILSGLNFDKDLSFLRQRPINLTFSGKLVFEIHRYSFTDGKSWETGNANQV
CGQVLNDMMSRGGFLLDQGYPLFVSEFGADQRGTNVNDNRYFNCFLGLAAELDFDWALWT
LVGSYYLREGVVGLNEVYGVMDWNWCDIRNSSFLNRISAVQSPFQGPGYNESRSHKLIFH
PMTGLCVRRISFLQPLELGPCSESDAWDYTTTKSLTLTGTYFCLQADKSGQPAKLGIMCT
NSNSKWQAISDSKMHLSSKLQDGTSLCLDVDSKNAIFTNPCKCLSKDKTCEPESQWFKII
DSTRQQNSTKSFFQSEHIVQFLGNTFSYIL*

Transcript Sequence

Transcript ID

Solyc08g066810.3.1
Transcript Infomation

Glycosyl hydrolase family 5 protein (AHRD V3.3 *** D7KPG3_ARALL)
Sequence

TGTCCTCATAATTTTGATACAAACAACTATTTAATTTTGATAATTTATCGCTAATCCGTT
ATTAATGAATTAATTAATTATTCCTCCTTGAACAAACTCTATAAATAGGAGTCATCTCTC
CATACACAAATGCCATCAAAGCCACTAGAAAAAAAAATGGGGCAATCACCACCAACATCA
TTTTATAATAACATATTATTGTTGAGCATTATTGTTACTATTTTGATGTTAATGCCTCAA
TATTCACATGCAACACTTTCCACAAATTCAAGATGGATAGTGAATGAAGGAGGACAAAGA
GTGAAATTATCTTGTGTTAATTGGGTGAGTCATTTGGAAGTCATGGTAGCAGAAGGACTA
AGTAAACAACCAATTGACACTATCTCAAAATCCATTACTAATATGGGTTTTAATTGTGTT
AGGCTTACTTGGCCTCTTTTTTTGTTTACAAATGATTCTTTGTCTTCATTAAGTGTACGT
CAATCCTTCAATAATCTTGGCCTTGTTGAATCTATTGCTGGACTTCAAGTTAATAATCCC
TCTATTCTTGATTTATCTCTTCTCCAGGCTTATCAGGCAGTGGTGTCTGGCCTGGGAAAT
AACAATGTGATGGTCATATTAGACAATCACATCAGCAAGCCTGGTTGGTGCTGCAGTAAC
TTTGACGGTAATGGCTTCTTCGGCGACCAATACTTTAACCCTGACCTTTGGGTACAGGGT
CTTACCAAGGTCGCAACCACATTCATCAACGTCACCAATGTCGTTGGTATGAGCTTAAGA
AACGAACTTCGTGGACCTAAACAAAATGTGAACGATTGGTACAGATATATGCAAAAAGGA
GCTGAAGCGGTACATGCAGCTAACCCTGACGTTCTAGTCATTCTCTCCGGCCTAAATTTT
GATAAGGATCTCTCTTTCCTGCGCCAGAGGCCAATTAACTTGACTTTCTCTGGGAAGCTA
GTGTTTGAGATTCATCGATATAGTTTCACAGATGGAAAATCGTGGGAAACAGGCAACGCG
AATCAAGTTTGTGGACAAGTTTTGAATGATATGATGAGCAGAGGTGGTTTTCTGTTAGAT
CAAGGGTATCCGTTGTTTGTGAGTGAGTTTGGGGCGGACCAAAGGGGCACCAATGTAAAT
GACAATAGGTATTTCAACTGTTTTCTGGGATTAGCAGCTGAACTTGACTTTGATTGGGCA
TTGTGGACACTTGTTGGAAGCTATTATTTAAGAGAAGGGGTTGTTGGACTCAATGAAGTC
TATGGGGTTATGGACTGGAATTGGTGTGACATTAGAAACTCTAGCTTCCTCAATAGGATC
TCCGCCGTCCAATCTCCTTTCCAAGGGCCAGGATATAACGAGTCTCGCTCCCATAAGCTA
ATCTTCCATCCAATGACAGGGCTTTGTGTTCGACGAATTTCATTTCTCCAGCCATTGGAG
CTTGGTCCATGCTCTGAATCCGACGCGTGGGACTATACTACAACCAAATCACTGACACTA
ACAGGAACTTACTTTTGCCTACAAGCAGATAAATCTGGTCAGCCAGCAAAACTTGGCATA
ATGTGCACCAATTCCAACTCGAAATGGCAAGCTATCTCAGACTCCAAGATGCATCTGTCT
TCTAAGCTACAAGATGGCACTAGTCTTTGCTTAGATGTTGATTCCAAAAATGCTATTTTC
ACCAACCCTTGCAAATGCTTGAGCAAAGATAAAACATGTGAGCCTGAAAGCCAATGGTTC
AAAATCATCGATAGCACCAGACAACAAAATAGTACGAAATCCTTTTTCCAGAGCGAGCAT
ATTGTTCAATTTCTAGGAAATACTTTTAGCTACATCTTGTAAGTGATGACAGTTCAGATT
GATAGTTCATTTAGACACAGAAATGAAAATTAATAGTCACACATTTCATCAAATCTTATT
TATGGAAATTGTACGTTCGACAAAGAAATAAAATTAGATTAATCATTGCAATGGTTCAAT
CCGTGTGAAACTAATATCCCCTCAAACGTGCAAAGGCAGTAACTTTTTGGATAAACTACT
CTAACCTGAGTGACTTTGGTAGACAATTTGCTATTGGCAACTGGTAACATAACACACACT
GATATAAATGGCAAATATAGTAGTACCCTGCTGTTTATTTTTTGTACAAGCTTCTGGTGC
TCAAAGTCACTGACTACTCTGGGGTTTCATACCAAAGGATAGGGGTTCCATTCCGAAATA