Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g066590.3.1
CDS Infomation

Root cap protein 3
Sequence

ATGGCTCAAACAAGTTTTGGGCTTCTCGCCACGGTCCTCCTCCTCCTTCTTGTGGTTTTG
GCTGAGGGCGGACCTCCTAAACCTATGAAAGTGAAATGCCAAGACAAGAAATTCGCGAGT
TGTTATCACAAAGATCTTTTCTGTCCTGTCAATTGTCCGCGTACATGTATAGCTGACTGT
GACTCATGTCAACCTATTTGTGTTCCTCAACTTCCACCACCAAAACCTCGTTCACCTAAG
AAAGTGAAATGCCAAGACAAGAACTTCCCAAAATGTTATCACAAAGACCTTTTCTGTCCT
GTCAATTGTCCGCGTACATGTATAGTTGATTGTGACTCATGCCAACCTATTTGTGTTCCT
CCACCACTTCCACCACCAAAACCTCGTTCACCTATGAAAGTAAAATGCCAAGACAAGAAA
TTCCCAAAATGTTATCGTAAGACCTTTGCATGCCCTGCTAATTGTCCGCGTTCATGTATA
GCTGACTGTGACTCATGTCAACCCGTCTGTTTACCACTATCGCCTCCATTGCCAACACCT
CCTACTCCTCCTTCTACTCCTAACTCACCACCCCCACCAGATCAAGCTGCAGAAGGAAAA
AGTGTCTCTTGTAAGAATAAGTTGTACCCTCAATGCTACCGCCAAGAGCATCAATGTCCA
AGTGCATGTCCCAATACTTGTGAAGTTGATTGTGTCACTTGCAGCCCCATTTGTGACTGC
AATAGGCCAGGGGCAGTTTGTCAAGATCCAAGATTTGTAGGAGCTGATGGACTAACATTC
TACTTCCATGGCAAAAAAGACGATAATTTTTGCTTAGTAACCGATTCCAATCTCCACATC
AATGCTCATTTCATCGGTAGGAGGAACGAAAACATGAAGAGAGACTTCACTTGGGTACAG
TCTCTTGGAATTCTCTATAACAATCATAAATTGTTCATAAGTGCCAAAAAGACATCAACA
TGGAACGATGCATTGGATCATCTAGACTTAGCCTTCGATGGACAATCAATCACCCTTCCT
AATCGCGAAGGGGTCAAGTACTTAGAACCAAATTCAAACACTACAATCACAAGAAATCGC
GATACTAACTCTGTTGTGATTGAAGTTGAAGGGAATTTCCAGATAAAAGCTAGAGTGGTA
CCGATAACAGAAAAGGAATCGAGTATTCATAAGTATGGTATTACTGAAGACGATTGTTTT
GCTCATTTGGATTTGGGGTTCAAGTTTTACTCATTGAGTGAGAAGGTAAATGGAGTATTG
GGACAAACTTATGGAAGTAATTATGTGAGCAGAGTGAAAATGGGAATTGAAATGCCTGTT
TTAGGTGGGGATAAAGAATTTGCATCCTCAAGTATTTTCTCCACTGATTGTGCTGTTTCA
AGATTTTCCACTACTAATAATCAAGAGTATGATGACTTCAAGTGTTCAAGTGGTATGGAT
GGAAAAGGAGTTGTGTGCTGA

Peptide Sequence

PEP ID

Solyc08g066590.3.1
PEP Infomation

Root cap protein 3
Sequence

MAQTSFGLLATVLLLLLVVLAEGGPPKPMKVKCQDKKFASCYHKDLFCPVNCPRTCIADC
DSCQPICVPQLPPPKPRSPKKVKCQDKNFPKCYHKDLFCPVNCPRTCIVDCDSCQPICVP
PPLPPPKPRSPMKVKCQDKKFPKCYRKTFACPANCPRSCIADCDSCQPVCLPLSPPLPTP
PTPPSTPNSPPPPDQAAEGKSVSCKNKLYPQCYRQEHQCPSACPNTCEVDCVTCSPICDC
NRPGAVCQDPRFVGADGLTFYFHGKKDDNFCLVTDSNLHINAHFIGRRNENMKRDFTWVQ
SLGILYNNHKLFISAKKTSTWNDALDHLDLAFDGQSITLPNREGVKYLEPNSNTTITRNR
DTNSVVIEVEGNFQIKARVVPITEKESSIHKYGITEDDCFAHLDLGFKFYSLSEKVNGVL
GQTYGSNYVSRVKMGIEMPVLGGDKEFASSSIFSTDCAVSRFSTTNNQEYDDFKCSSGMD
GKGVVC*

Transcript Sequence

Transcript ID

Solyc08g066590.3.1
Transcript Infomation

Root cap protein 3
Sequence

TAACTACTCTGTTTGTCACATATAAAATGGAGGGAATTAATAGTATGGAATTGTTTTAAT
AAGTAGGTAATTTCACTCTTAAGTTTCTAAACCTAACACCTATAAAAGGAGACCATATAC
ATTCCAAGTATTACACCCTTGAGAATAACTTCCTATTATTGATTTTCTTAGTTCAATGGC
TCAAACAAGTTTTGGGCTTCTCGCCACGGTCCTCCTCCTCCTTCTTGTGGTTTTGGCTGA
GGGCGGACCTCCTAAACCTATGAAAGTGAAATGCCAAGACAAGAAATTCGCGAGTTGTTA
TCACAAAGATCTTTTCTGTCCTGTCAATTGTCCGCGTACATGTATAGCTGACTGTGACTC
ATGTCAACCTATTTGTGTTCCTCAACTTCCACCACCAAAACCTCGTTCACCTAAGAAAGT
GAAATGCCAAGACAAGAACTTCCCAAAATGTTATCACAAAGACCTTTTCTGTCCTGTCAA
TTGTCCGCGTACATGTATAGTTGATTGTGACTCATGCCAACCTATTTGTGTTCCTCCACC
ACTTCCACCACCAAAACCTCGTTCACCTATGAAAGTAAAATGCCAAGACAAGAAATTCCC
AAAATGTTATCGTAAGACCTTTGCATGCCCTGCTAATTGTCCGCGTTCATGTATAGCTGA
CTGTGACTCATGTCAACCCGTCTGTTTACCACTATCGCCTCCATTGCCAACACCTCCTAC
TCCTCCTTCTACTCCTAACTCACCACCCCCACCAGATCAAGCTGCAGAAGGAAAAAGTGT
CTCTTGTAAGAATAAGTTGTACCCTCAATGCTACCGCCAAGAGCATCAATGTCCAAGTGC
ATGTCCCAATACTTGTGAAGTTGATTGTGTCACTTGCAGCCCCATTTGTGACTGCAATAG
GCCAGGGGCAGTTTGTCAAGATCCAAGATTTGTAGGAGCTGATGGACTAACATTCTACTT
CCATGGCAAAAAAGACGATAATTTTTGCTTAGTAACCGATTCCAATCTCCACATCAATGC
TCATTTCATCGGTAGGAGGAACGAAAACATGAAGAGAGACTTCACTTGGGTACAGTCTCT
TGGAATTCTCTATAACAATCATAAATTGTTCATAAGTGCCAAAAAGACATCAACATGGAA
CGATGCATTGGATCATCTAGACTTAGCCTTCGATGGACAATCAATCACCCTTCCTAATCG
CGAAGGGGTCAAGTACTTAGAACCAAATTCAAACACTACAATCACAAGAAATCGCGATAC
TAACTCTGTTGTGATTGAAGTTGAAGGGAATTTCCAGATAAAAGCTAGAGTGGTACCGAT
AACAGAAAAGGAATCGAGTATTCATAAGTATGGTATTACTGAAGACGATTGTTTTGCTCA
TTTGGATTTGGGGTTCAAGTTTTACTCATTGAGTGAGAAGGTAAATGGAGTATTGGGACA
AACTTATGGAAGTAATTATGTGAGCAGAGTGAAAATGGGAATTGAAATGCCTGTTTTAGG
TGGGGATAAAGAATTTGCATCCTCAAGTATTTTCTCCACTGATTGTGCTGTTTCAAGATT
TTCCACTACTAATAATCAAGAGTATGATGACTTCAAGTGTTCAAGTGGTATGGATGGAAA
AGGAGTTGTGTGCTGATAACTACTCTACAACATTATTATTCAAATAAGATTATGATAATT
GTAATGGGAGTTTGCAATATTCATCATTTGTATTGTATTGTACTGAATTAATAAAAGTAT
CAAGTACTTAGTATTTTTCTTCTTCTATTTAGATTTTAAATACGTATACACCCTAATGTT
TTTCGTATTTTACTGTTGTTTTAGTGTTGTTGTAAAGTCGTTGGCTTGGTGGGATCAGTG
CAAACTATGAACTGTGGTTTTAAAGAGATTGTTGTAGTTGCTACTGCATTCAAGTTTGCT
ATTTAAACATAAAGAAAACAAGTAACAACGTATTTGAATTTGCTTCTGCTTGTAATTTGT
GTAGACTTTTATGCATCAAGAGGAACAGATAAGAATAAGAGAAAGGAAAACAAAATTAGT
GGAATATTGATGCAGTACAGATTGCGTCAAAGTCATCTACTTATGAACTTCAACCAATGG
ACATTTTGGGTCACTTTTGAAAACTATAAATAGGCATTTAGGGGTTCAATTTAGGTTAGA
TTATTTTGGATGTTGAAAACTAAAAACTCATATTTGAGTGTTAGAGAGTTTGTTTAGAAA
CGTTGGTTGCTTGGGATATTGATTCCCTTGAGAGTTAGGTGCTTTTTGTATGATTAACGA
ATCGAGGTCATTGGGTTTAATATACACAACCAACCAATGCGCACACAACTGTTGACATAG
AGAAGGGAAAACTCACATATTGCTTTACAATTTTCAGTTTATCCTTTCTTCTTTTGGGAA
CTTAATAAATAGTTTCTTCTGCTGCCACTTATCTACTGCTTAGTTGATTTATTTTAATGT
GTTTCATATCACTACAATCCCAAGTCATACTGAACGAACACCACACTCATGGTCAATCCT
GATGTGTTCAAATTTGGACTTCATCAGAAAATAAACTAGGATAGCATACCAATAAATACC
AGTGTATATAAATACTAGTAACAAAAGCCATCCAAATTACTGTTGTCTACATAGGAAATT
AGAAGGAAT