Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g061890.3.1
CDS Infomation

E3 ubiquitin-protein ligase RBBP6 (AHRD V3.3 *** A0A1D1Z3E3_9ARAE)
Sequence

ATGTCGATTAGCTTCAAATTCAGAAGCTGTTCAGACTTCGATTCGGTTGATATAGATGGC
CGGACCTCTATATCTTTAGGAGAACTAAAGATCAGGATCGCCCGACTGAAAAATCTCAAC
GTAGGCAGGGATTTCGATCTCATCCTCTCCGATGCCACCTCCGGTAAAGTGTATGATGAC
GAAAGTATTCAGATTGCGAGTGGGTCAAGTGTAATTATCAGGAGAGTTCCTGCTAAAAAA
ACTCCTTCAACTATTAAGCCAGCAATTGGTACCATGAAGTATTTACGGTTGAAACATGTT
GATCGTATGAACCAGGTGGATGCGCAAGTCAATAAATTTCATGACTTTAGGGCTGATTTT
TTTCCGCTGGATGAGGGAATATTTCCCAAGAATGATGTAGGATTTGATCAGCAGAACTGC
TGGGACTTTGAGAAAGATTACCCCTTAGGTCCAAGGGCGATACGCTCCAACTTTCCAGCT
TTTCGCAGTAAGGTTTTACCGGACGTACTGAGATGCCCTCTCTGTAGAATCTTCATGAAG
GATGCTGTAATGATACCTTGCTGCCAGCTCAGTTTTTGTGAGAAATGCATTCGTCTGGTT
CTTCTAGAAAAGGCGAAGTGCCCAAAATGCTCTTCTAGCAGGTGTAGAGTGGAAGATCTG
CTACCAAATTTATCTCTCAGGCGCACAATTCGGCGTTTTCTTGCAACTGATCCAGAAAAT
GCTTTACGCAGATATGTTCCAGATGGTGAATCTGGCAATCAGGTGAAGGATATGTGTTGT
GCTGTAACTGTTGCCCAACAGGAACCGGAGATGCCTCATTCACCCTCAGCTTCTGGAAAA
GGATCCAATCAAGTTATGGGAGACCCACCTGTTGGGGAAAAAGCGTTGTCTAGGATAATG
CAACAAACAGATGGAGGAAGAGATTCTTCCATCAAGAAGAATGCAGACCTGTGGTGTGAC
ACAAGAGGTGGGAACATGAATTTTGCACCTGCTGATATTATGGAGGACCGTAACTGTTAT
GTGTATGGTTCCAATCCAAATCCAATGCTTCAAACAGGTAAACCTTTTGTTTGGTTAATT
CATATTGTAGGCAGAGCGTTGTGTAATGTTTTTGCTTTGGCTGTGCTTGAAAAAGGAAAC
CTCATGCTTACAGGAGGATTTCCAGCCTATTCATCACCTTACTGGAATAACAATACGTAT
TCCACACCACTGCCATTTGCAAATATGTATGGTAATGCTGGAAATGCTTCATTTAATGCT
GATATGGTTCCCCCGGCGCCTGCTTATGTTCCTCCTTATATGCCATCTATGCATGCTGGC
ATGCCTTTACGTGGAGAAATCATGAGAATGGGTGGTATGGCACTTCCAGCTGGAAACAGA
GATGATCTCCCATTGAACCAATATGAGTACATGGGTGGCAAGCTTGCTGAAGATAAAAGG
ATAATTCAGAATGAAATTATGGGAAGTGGGCAATATTATCAAGCTGAGTCTAACTTTAAG
GAGCATTTCCCAAAGGACGATCGAGTTGCAACAGGGAAGTTCCACAAGAAGAGGGAACCA
GGTACAAATTGTTCTGAGGATCACTTTGCTCGCAGAACACACAGAAAGCAGCTCCATGTT
GAGAAAAGAAGGGAGAGAAGTCGTCGTTCCTCATCTGCTAATAGAGACAAGGTGACCCGT
CACTCTGACAGGTTCAATGATGGCTTTCTTGGTAGTTCTGATAGGCGTAGGAGAGAAATT
CATCAACACCATTTTCGGGACTCAAGAAAGCGTCATGAAAGAGACTCTCATCACAAGCAT
TTCCCAAGTTCTGCACATCCTGTGCATCAGACGGCGCGATCCAAAGAGAGGAGGGGTTTT
GGGCATGAGGCAAAGCACTCCAGGCACCATGCAAGACACTTCACTGATGAGGTTCGTGAC
AACAAGAAATGGAAGAGTAGCAGCTTTTATGAAGATTGCAGAGATGGTTATCATCACAAG
CGAAAGAGAGATCATTGA

Peptide Sequence

PEP ID

Solyc08g061890.3.1
PEP Infomation

E3 ubiquitin-protein ligase RBBP6 (AHRD V3.3 *** A0A1D1Z3E3_9ARAE)
Sequence

MSISFKFRSCSDFDSVDIDGRTSISLGELKIRIARLKNLNVGRDFDLILSDATSGKVYDD
ESIQIASGSSVIIRRVPAKKTPSTIKPAIGTMKYLRLKHVDRMNQVDAQVNKFHDFRADF
FPLDEGIFPKNDVGFDQQNCWDFEKDYPLGPRAIRSNFPAFRSKVLPDVLRCPLCRIFMK
DAVMIPCCQLSFCEKCIRLVLLEKAKCPKCSSSRCRVEDLLPNLSLRRTIRRFLATDPEN
ALRRYVPDGESGNQVKDMCCAVTVAQQEPEMPHSPSASGKGSNQVMGDPPVGEKALSRIM
QQTDGGRDSSIKKNADLWCDTRGGNMNFAPADIMEDRNCYVYGSNPNPMLQTGKPFVWLI
HIVGRALCNVFALAVLEKGNLMLTGGFPAYSSPYWNNNTYSTPLPFANMYGNAGNASFNA
DMVPPAPAYVPPYMPSMHAGMPLRGEIMRMGGMALPAGNRDDLPLNQYEYMGGKLAEDKR
IIQNEIMGSGQYYQAESNFKEHFPKDDRVATGKFHKKREPGTNCSEDHFARRTHRKQLHV
EKRRERSRRSSSANRDKVTRHSDRFNDGFLGSSDRRRREIHQHHFRDSRKRHERDSHHKH
FPSSAHPVHQTARSKERRGFGHEAKHSRHHARHFTDEVRDNKKWKSSSFYEDCRDGYHHK
RKRDH*

Transcript Sequence

Transcript ID

Solyc08g061890.3.1
Transcript Infomation

E3 ubiquitin-protein ligase RBBP6 (AHRD V3.3 *** A0A1D1Z3E3_9ARAE)
Sequence

CCTTGTTTTCAACTTCCGTTACTCATTTTAGCCCTCTTCCTTCCCTCGAATTGATCGCTC
TCCCGGATTTTACAATCGAATGAATTGCTGCTGGTTTGTCTCACAGAAAAAATGTCGATT
AGCTTCAAATTCAGAAGCTGTTCAGACTTCGATTCGGTTGATATAGATGGCCGGACCTCT
ATATCTTTAGGAGAACTAAAGATCAGGATCGCCCGACTGAAAAATCTCAACGTAGGCAGG
GATTTCGATCTCATCCTCTCCGATGCCACCTCCGGTAAAGTGTATGATGACGAAAGTATT
CAGATTGCGAGTGGGTCAAGTGTAATTATCAGGAGAGTTCCTGCTAAAAAAACTCCTTCA
ACTATTAAGCCAGCAATTGGTACCATGAAGTATTTACGGTTGAAACATGTTGATCGTATG
AACCAGGTGGATGCGCAAGTCAATAAATTTCATGACTTTAGGGCTGATTTTTTTCCGCTG
GATGAGGGAATATTTCCCAAGAATGATGTAGGATTTGATCAGCAGAACTGCTGGGACTTT
GAGAAAGATTACCCCTTAGGTCCAAGGGCGATACGCTCCAACTTTCCAGCTTTTCGCAGT
AAGGTTTTACCGGACGTACTGAGATGCCCTCTCTGTAGAATCTTCATGAAGGATGCTGTA
ATGATACCTTGCTGCCAGCTCAGTTTTTGTGAGAAATGCATTCGTCTGGTTCTTCTAGAA
AAGGCGAAGTGCCCAAAATGCTCTTCTAGCAGGTGTAGAGTGGAAGATCTGCTACCAAAT
TTATCTCTCAGGCGCACAATTCGGCGTTTTCTTGCAACTGATCCAGAAAATGCTTTACGC
AGATATGTTCCAGATGGTGAATCTGGCAATCAGGTGAAGGATATGTGTTGTGCTGTAACT
GTTGCCCAACAGGAACCGGAGATGCCTCATTCACCCTCAGCTTCTGGAAAAGGATCCAAT
CAAGTTATGGGAGACCCACCTGTTGGGGAAAAAGCGTTGTCTAGGATAATGCAACAAACA
GATGGAGGAAGAGATTCTTCCATCAAGAAGAATGCAGACCTGTGGTGTGACACAAGAGGT
GGGAACATGAATTTTGCACCTGCTGATATTATGGAGGACCGTAACTGTTATGTGTATGGT
TCCAATCCAAATCCAATGCTTCAAACAGGTAAACCTTTTGTTTGGTTAATTCATATTGTA
GGCAGAGCGTTGTGTAATGTTTTTGCTTTGGCTGTGCTTGAAAAAGGAAACCTCATGCTT
ACAGGAGGATTTCCAGCCTATTCATCACCTTACTGGAATAACAATACGTATTCCACACCA
CTGCCATTTGCAAATATGTATGGTAATGCTGGAAATGCTTCATTTAATGCTGATATGGTT
CCCCCGGCGCCTGCTTATGTTCCTCCTTATATGCCATCTATGCATGCTGGCATGCCTTTA
CGTGGAGAAATCATGAGAATGGGTGGTATGGCACTTCCAGCTGGAAACAGAGATGATCTC
CCATTGAACCAATATGAGTACATGGGTGGCAAGCTTGCTGAAGATAAAAGGATAATTCAG
AATGAAATTATGGGAAGTGGGCAATATTATCAAGCTGAGTCTAACTTTAAGGAGCATTTC
CCAAAGGACGATCGAGTTGCAACAGGGAAGTTCCACAAGAAGAGGGAACCAGGTACAAAT
TGTTCTGAGGATCACTTTGCTCGCAGAACACACAGAAAGCAGCTCCATGTTGAGAAAAGA
AGGGAGAGAAGTCGTCGTTCCTCATCTGCTAATAGAGACAAGGTGACCCGTCACTCTGAC
AGGTTCAATGATGGCTTTCTTGGTAGTTCTGATAGGCGTAGGAGAGAAATTCATCAACAC
CATTTTCGGGACTCAAGAAAGCGTCATGAAAGAGACTCTCATCACAAGCATTTCCCAAGT
TCTGCACATCCTGTGCATCAGACGGCGCGATCCAAAGAGAGGAGGGGTTTTGGGCATGAG
GCAAAGCACTCCAGGCACCATGCAAGACACTTCACTGATGAGGTTCGTGACAACAAGAAA
TGGAAGAGTAGCAGCTTTTATGAAGATTGCAGAGATGGTTATCATCACAAGCGAAAGAGA
GATCATTGA