Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g041780.3.1
CDS Infomation

Neurochondrin (AHRD V3.3 *** A0A0B0NUA0_GOSAR)
Sequence

ATGGAAGAACACGCTTCAAGTAGTAGTAGTAGTTCTCAACTACAACCTTCATTAGATGAT
TGTTTGAAGCTATTCAGAGGAGAAAGGGATGAACAGAGGTTAGCCGGTCTACTTGTTGTT
ACCAAATTTTGCAATAAAGATGACCATACAGCCATTCGCAAGATTTACGATGCCCTAGGA
CCTCAATTCCTACACCGACTTCTTCGAACCGGAATAGGGAAAGGAAGTGATGTCGGGAGT
AGCGATAATCGTGATGCCTACTTGCAATTGTCGATCACAGTTCTTGCAGCATTTTGTAGA
GTTCCCCAGATTGCAGCTTCTGAAGAAATGATTAATAAGATTCCTCTCATTCTAGAGGCA
ATATCCAGAGAAGCAGGATCACCTATAATTGAAGACTGCTATGAGTATTTGTTTTTGGTC
TCAACGGCGAGTGAAGAAGGGGTTCAAACCTTGTACAAATCTGGTGGCTTGAATGTGCTA
GCTTCACAAATGATGATTCTACCCGATGGTTCTCATATGATTGAACTTGCTCTGAGACTT
GTGCAAATCATTGTCATTAAGCTACCCTCGGAAAATGTTTATTCTGAGCATCCAACTGAC
CTGTCACTGGTGGTGTGTGCAGTGGCAAAGCAGTTTGCTGTTCTACAGAATGCACTGAAA
TTTGAAGCGCTTCACCTCCTATCAACTATCCTGTCCAACAGATATTCTGCACCTGTATAT
GATGCTCTTCGCTTAGTGGAAAATGATGTTTGGTCGACAAATTTGTGGATTGGTATTCTG
GCGATCTTGCAAAATCGAGTTGCACCTTCACATAAACTTCATGCTCTTGTTCTGACCGAG
TGTGTCATATCAATTGTTGGTGAACGGTGGCTTAATGGGGAGATGAACTTAACTGGTTCT
CAGGTTTCCCTGCCTGCTGACAGGTGCATTCTGCTTATTTTGGAGTCGTCAAGGGTTGAA
ATTGCTGTTCTTCTAAATGATCTGGCATACTTAAAATATGAAGCCTCCAACGCATCCTCG
AATAGAGAGAACATTCTTGTGAAGCAGAGGAATCTTGGTGTAGCCTTCTCTTTGGTTGAA
AAAATAATTAAACTTATTTCTAGTTTTGGTGGAGAAGAGTCAACTGCCAATGCTATTATC
AGTGAGAGCACTTTCACAAAAATCATTTCTGGGCTCAATGAGACAATTGGTGTTGTTTTG
GACTATATACGAGATGCTAAGGAGCATGGACAGATGAAAGGGGATGATCTTCTAGCAGCA
GTGCGAGTAATCGGAAGTCCTTTTTATTCCATCTGTTTTTTACTTCCAATGCTGTGTCAA
ATAACTCTCGAGACTGGAGGATGTAAAATTTTAGCTTCCTCGGGTGCATTTAGAGAAGTT
GTTGGTTACCTCATTGCTTTGATTGACCAAAACAATTTTACGTCTGAGGATAATGGTTCT
ATATTCTTGGCTTGTGATACAATTTTGAATCTTCTTCTAAAGCAGGAACAAATCAAATTT
CCCTCAGATGATCCTAGTTTTATCAGACTTTTGGTAGCATTGTCACGCTGGGCGGAGGGT
ATGGATGATGCATCTATTATCATGATGGCATCAAGTATCTGTTCGCTTATACTCGATTTG
ACGTCAGAGGAAGCTCTTCTAAATCATCCAGACTTCATTAGTGGCGATGTTGGTAATCTG
TCAAAGCTCATTAGACGAAGCTTTGTGATGTGTGGTCAGGACTTGATATCCGATGATGCT
AAAGCTGAAGTAGATCTTTTTCAGATAATTACCGCAGCATATTCATCGTGGGCTGATCGA
TTTCCTAGCATTAAACAAGCTGTGGAGAGCTCAGGGCCATTTGGATTTCGATGTGTTTCA
TAG

Peptide Sequence

PEP ID

Solyc08g041780.3.1
PEP Infomation

Neurochondrin (AHRD V3.3 *** A0A0B0NUA0_GOSAR)
Sequence

MEEHASSSSSSSQLQPSLDDCLKLFRGERDEQRLAGLLVVTKFCNKDDHTAIRKIYDALG
PQFLHRLLRTGIGKGSDVGSSDNRDAYLQLSITVLAAFCRVPQIAASEEMINKIPLILEA
ISREAGSPIIEDCYEYLFLVSTASEEGVQTLYKSGGLNVLASQMMILPDGSHMIELALRL
VQIIVIKLPSENVYSEHPTDLSLVVCAVAKQFAVLQNALKFEALHLLSTILSNRYSAPVY
DALRLVENDVWSTNLWIGILAILQNRVAPSHKLHALVLTECVISIVGERWLNGEMNLTGS
QVSLPADRCILLILESSRVEIAVLLNDLAYLKYEASNASSNRENILVKQRNLGVAFSLVE
KIIKLISSFGGEESTANAIISESTFTKIISGLNETIGVVLDYIRDAKEHGQMKGDDLLAA
VRVIGSPFYSICFLLPMLCQITLETGGCKILASSGAFREVVGYLIALIDQNNFTSEDNGS
IFLACDTILNLLLKQEQIKFPSDDPSFIRLLVALSRWAEGMDDASIIMMASSICSLILDL
TSEEALLNHPDFISGDVGNLSKLIRRSFVMCGQDLISDDAKAEVDLFQIITAAYSSWADR
FPSIKQAVESSGPFGFRCVS*

Transcript Sequence

Transcript ID

Solyc08g041780.3.1
Transcript Infomation

Neurochondrin (AHRD V3.3 *** A0A0B0NUA0_GOSAR)
Sequence

AACCAATAATATCGCCATTGAATTTAATATGAAACTATAGTATTATTAGATTGTCAAGTA
ACTTAAACTTTTCATATGAAGTATTTATCCTTTCAACTTTTTATGGGTATGAAAATTTCT
TTTCAGTATTTTTTCAGAAAAAGTAATATCAAAATGGTATTTTAACTTGTGTTTCTCTCT
CTCTCTCATATTTGTTTCCCCTGGAAGCATCGGTGACATTGTAAAACATTCCCTCCAGAA
AATTCGCTATTTGTCTTCCTTCCCCACTCGCTCTGCAACTAATGCTCTGCCTCTTCAATG
GAAGAACACGCTTCAAGTAGTAGTAGTAGTTCTCAACTACAACCTTCATTAGATGATTGT
TTGAAGCTATTCAGAGGAGAAAGGGATGAACAGAGGTTAGCCGGTCTACTTGTTGTTACC
AAATTTTGCAATAAAGATGACCATACAGCCATTCGCAAGATTTACGATGCCCTAGGACCT
CAATTCCTACACCGACTTCTTCGAACCGGAATAGGGAAAGGAAGTGATGTCGGGAGTAGC
GATAATCGTGATGCCTACTTGCAATTGTCGATCACAGTTCTTGCAGCATTTTGTAGAGTT
CCCCAGATTGCAGCTTCTGAAGAAATGATTAATAAGATTCCTCTCATTCTAGAGGCAATA
TCCAGAGAAGCAGGATCACCTATAATTGAAGACTGCTATGAGTATTTGTTTTTGGTCTCA
ACGGCGAGTGAAGAAGGGGTTCAAACCTTGTACAAATCTGGTGGCTTGAATGTGCTAGCT
TCACAAATGATGATTCTACCCGATGGTTCTCATATGATTGAACTTGCTCTGAGACTTGTG
CAAATCATTGTCATTAAGCTACCCTCGGAAAATGTTTATTCTGAGCATCCAACTGACCTG
TCACTGGTGGTGTGTGCAGTGGCAAAGCAGTTTGCTGTTCTACAGAATGCACTGAAATTT
GAAGCGCTTCACCTCCTATCAACTATCCTGTCCAACAGATATTCTGCACCTGTATATGAT
GCTCTTCGCTTAGTGGAAAATGATGTTTGGTCGACAAATTTGTGGATTGGTATTCTGGCG
ATCTTGCAAAATCGAGTTGCACCTTCACATAAACTTCATGCTCTTGTTCTGACCGAGTGT
GTCATATCAATTGTTGGTGAACGGTGGCTTAATGGGGAGATGAACTTAACTGGTTCTCAG
GTTTCCCTGCCTGCTGACAGGTGCATTCTGCTTATTTTGGAGTCGTCAAGGGTTGAAATT
GCTGTTCTTCTAAATGATCTGGCATACTTAAAATATGAAGCCTCCAACGCATCCTCGAAT
AGAGAGAACATTCTTGTGAAGCAGAGGAATCTTGGTGTAGCCTTCTCTTTGGTTGAAAAA
ATAATTAAACTTATTTCTAGTTTTGGTGGAGAAGAGTCAACTGCCAATGCTATTATCAGT
GAGAGCACTTTCACAAAAATCATTTCTGGGCTCAATGAGACAATTGGTGTTGTTTTGGAC
TATATACGAGATGCTAAGGAGCATGGACAGATGAAAGGGGATGATCTTCTAGCAGCAGTG
CGAGTAATCGGAAGTCCTTTTTATTCCATCTGTTTTTTACTTCCAATGCTGTGTCAAATA
ACTCTCGAGACTGGAGGATGTAAAATTTTAGCTTCCTCGGGTGCATTTAGAGAAGTTGTT
GGTTACCTCATTGCTTTGATTGACCAAAACAATTTTACGTCTGAGGATAATGGTTCTATA
TTCTTGGCTTGTGATACAATTTTGAATCTTCTTCTAAAGCAGGAACAAATCAAATTTCCC
TCAGATGATCCTAGTTTTATCAGACTTTTGGTAGCATTGTCACGCTGGGCGGAGGGTATG
GATGATGCATCTATTATCATGATGGCATCAAGTATCTGTTCGCTTATACTCGATTTGACG
TCAGAGGAAGCTCTTCTAAATCATCCAGACTTCATTAGTGGCGATGTTGGTAATCTGTCA
AAGCTCATTAGACGAAGCTTTGTGATGTGTGGTCAGGACTTGATATCCGATGATGCTAAA
GCTGAAGTAGATCTTTTTCAGATAATTACCGCAGCATATTCATCGTGGGCTGATCGATTT
CCTAGCATTAAACAAGCTGTGGAGAGCTCAGGGCCATTTGGATTTCGATGTGTTTCATAG
GACTCTTGGAAATTGTGGTGCTGATGAATTGAGTTGTAGTACACCTTGTATGAAGGGTAT
TGTCTTTCTGCAATCACTCACGGCATTTCGTTCCTGGGCTTCCCGTGGCTCAAGGAATCT
GGAGAAGTGACAGTTATATTTATCACCAACTTTGCAGTAAAACTTGTGAGGGGGAATACA
CTTAAACATTTTGGATGGACTCGAGCTTTTCCTAGCATCTCCATGACAAGTTACTAGTTT
TTTCTGTTGCTTGCATGATATGGTTCATAACATAGTGTTAGAAGCAAGTTGCATTAGTTA
TTTTGTTACTACTATTTCCTTATGTAAGTTTTTTAATTACATCTTTCCATCGAATGTGCT
TGGGTGAGACACTTCCTACCGTGTGCCAAAATGAATATTTGATGTACCTTCCAAAATAGT
AGTTCATTTTCAGCCATTATAGGAAAACAAGTACGATGTGCTAGTTCGACCCATGTGACC
ATACTGTACCTCTACTATCGCTCTTCCATTTCAATTTGTTTTTCTTATTTATTTCTTCTA
CTTCAATTTAAAATGGCATTTTCTTTGATGCTTTTTAAATTTTAAATGGAGGGAGTAGC