Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g029150.2.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XC37_CYNCS)
Sequence

ATGGGATGGATTGACCAAAACCTTGTTATGGATCAAGCTATGGCTGCTATTATCAGAAAT
CGGCCATTTGAGTCTTCAATTCCCCAATCCATTTGGACTGTAGAAACAGTTTCTCAAGTC
TTGAGATCAATCCCCAGATTCCTCTTCCAATCCCCAAGATCCATTGGCCGACAAAATGGG
TTTCGCCACCGTACCCCATTAAAGCAGAGAAACCTAAAACAAGAGTTACATAACGCTCGG
AAGGGAGTACTCATTCTCGGACCGGCTGCTCATAGAGATGTTCAAAAGGTGCAATTAGGA
TTGGAGAAAGCATTGGAATTTTTCCATTGGGTTGAGACCCGCTGTGGGTTTACTCACAAT
GAGCTCACTTGTAGAGAAATGTCTCTTGTTCTTGCCAAAGGGTCGTGTAATTCGAAGTTT
CTTTGGGAATTTCTCAGAAGAATGTCGAGAAGAGGGCTTTTGACGACACCGACTGTTACG
TGTTTGATAAAATGCCTAGGAGAAGAAGGGTTGGTAAATGAAGCATTGACTACTTTCTAC
AGAATGAAGCAATTTCACTGTATGCCTGATGTTTATGCTTACAACACACTCATATTTGCT
CTTTGTAGAGTTGGGAATTTCAAAAAAGCTAAGTTCTTGATGGAGCAAATGGAGTTGCCT
GGTTTTAGGTGTCCACCCGATGTCTTTACTTACACAATCTTGATTAGCTCTTATTGTAGA
TATGGTACGGAGACTGGCTGTAGAAAAGCTATTAGACGGAGAATATGGGAGGCAAATCAC
TTGTTTCGCATCATGCTATTCAAAGGATTTGTTCCTGATGTAGTAACTTATAATTGTTTG
ATCAATGGATGCTGCAAAACTAATAGGATAGAGAGAGCATTGGAGTTGTTGGATGATATG
GTGAAAAGAGGGGTTGTGCCTAATCGAATTACATATAATTCTTTCATTAGGTATTATAGT
GTTACAAATGAGATTGATAAGGCTATTGAAATGCTGAGAAGAATGCAAGGAATGAATCAT
GGAGTAGTACTACCATGTAACAGTTCGTATACACCGATAATTCATGCTATGTGTGAAACT
GGTAGGGTGGTGGAGGCAAGAGATCTTCTTGTTGAAGTGGCTGAACAAGGTTCAATTCCA
AGAGAATATACTTATAAACTAGTTCGTGATGCTTTAGAATCTTCTGGGAAGATTGATTTG
CTTGATGAAGAATTGTGTACAAGATTAGAAGATGGTATTAAAGGTAGGATTAGACAAGTG
ATGAAAGTTAAACCTTTGTTGCAGCATCAAACTGTTTCATCATTTGGAGAATTTGACACT
GATACTGTTAGCACCTGTGATGAACCCGATGTGACCTATAATTCATGGGTTAGAGCACTA
AAATTAGTCATAGCTTACATTAGGATGACCGGTAAGTCATTGGTTAGAAACTCATGGGTT
AGACGTCCAAAGAAAGACCAGGAGCACACCAACGAGGAAAAAAACTTCAATCAGTAA

Peptide Sequence

PEP ID

Solyc08g029150.2.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XC37_CYNCS)
Sequence

MGWIDQNLVMDQAMAAIIRNRPFESSIPQSIWTVETVSQVLRSIPRFLFQSPRSIGRQNG
FRHRTPLKQRNLKQELHNARKGVLILGPAAHRDVQKVQLGLEKALEFFHWVETRCGFTHN
ELTCREMSLVLAKGSCNSKFLWEFLRRMSRRGLLTTPTVTCLIKCLGEEGLVNEALTTFY
RMKQFHCMPDVYAYNTLIFALCRVGNFKKAKFLMEQMELPGFRCPPDVFTYTILISSYCR
YGTETGCRKAIRRRIWEANHLFRIMLFKGFVPDVVTYNCLINGCCKTNRIERALELLDDM
VKRGVVPNRITYNSFIRYYSVTNEIDKAIEMLRRMQGMNHGVVLPCNSSYTPIIHAMCET
GRVVEARDLLVEVAEQGSIPREYTYKLVRDALESSGKIDLLDEELCTRLEDGIKGRIRQV
MKVKPLLQHQTVSSFGEFDTDTVSTCDEPDVTYNSWVRALKLVIAYIRMTGKSLVRNSWV
RRPKKDQEHTNEEKNFNQ*

Transcript Sequence

Transcript ID

Solyc08g029150.2.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XC37_CYNCS)
Sequence

GATTGAACTGATAAATTACATGGGATGGATTGACCAAAACCTTGTTATGGATCAAGCTAT
GGCTGCTATTATCAGAAATCGGCCATTTGAGTCTTCAATTCCCCAATCCATTTGGACTGT
AGAAACAGTTTCTCAAGTCTTGAGATCAATCCCCAGATTCCTCTTCCAATCCCCAAGATC
CATTGGCCGACAAAATGGGTTTCGCCACCGTACCCCATTAAAGCAGAGAAACCTAAAACA
AGAGTTACATAACGCTCGGAAGGGAGTACTCATTCTCGGACCGGCTGCTCATAGAGATGT
TCAAAAGGTGCAATTAGGATTGGAGAAAGCATTGGAATTTTTCCATTGGGTTGAGACCCG
CTGTGGGTTTACTCACAATGAGCTCACTTGTAGAGAAATGTCTCTTGTTCTTGCCAAAGG
GTCGTGTAATTCGAAGTTTCTTTGGGAATTTCTCAGAAGAATGTCGAGAAGAGGGCTTTT
GACGACACCGACTGTTACGTGTTTGATAAAATGCCTAGGAGAAGAAGGGTTGGTAAATGA
AGCATTGACTACTTTCTACAGAATGAAGCAATTTCACTGTATGCCTGATGTTTATGCTTA
CAACACACTCATATTTGCTCTTTGTAGAGTTGGGAATTTCAAAAAAGCTAAGTTCTTGAT
GGAGCAAATGGAGTTGCCTGGTTTTAGGTGTCCACCCGATGTCTTTACTTACACAATCTT
GATTAGCTCTTATTGTAGATATGGTACGGAGACTGGCTGTAGAAAAGCTATTAGACGGAG
AATATGGGAGGCAAATCACTTGTTTCGCATCATGCTATTCAAAGGATTTGTTCCTGATGT
AGTAACTTATAATTGTTTGATCAATGGATGCTGCAAAACTAATAGGATAGAGAGAGCATT
GGAGTTGTTGGATGATATGGTGAAAAGAGGGGTTGTGCCTAATCGAATTACATATAATTC
TTTCATTAGGTATTATAGTGTTACAAATGAGATTGATAAGGCTATTGAAATGCTGAGAAG
AATGCAAGGAATGAATCATGGAGTAGTACTACCATGTAACAGTTCGTATACACCGATAAT
TCATGCTATGTGTGAAACTGGTAGGGTGGTGGAGGCAAGAGATCTTCTTGTTGAAGTGGC
TGAACAAGGTTCAATTCCAAGAGAATATACTTATAAACTAGTTCGTGATGCTTTAGAATC
TTCTGGGAAGATTGATTTGCTTGATGAAGAATTGTGTACAAGATTAGAAGATGGTATTAA
AGGTAGGATTAGACAAGTGATGAAAGTTAAACCTTTGTTGCAGCATCAAACTGTTTCATC
ATTTGGAGAATTTGACACTGATACTGTTAGCACCTGTGATGAACCCGATGTGACCTATAA
TTCATGGGTTAGAGCACTAAAATTAGTCATAGCTTACATTAGGATGACCGGTAAGTCATT
GGTTAGAAACTCATGGGTTAGACGTCCAAAGAAAGACCAGGAGCACACCAACGAGGAAAA
AAACTTCAATCAGTAACCAAGTCTAACGCGGGTTAAAATTCTTAAGTCAGACAAAGCTCG
CAGTTGTTACTGCCATGGTGCTTACTGATTACAGAAATTAGGTCTTAGGAGCTAATTGTT
TTTCAAATCTTTTTTGTTGTGTGAATTCTTTGTGCTGCAAAATCTTTTCTAATTTTTCAA
AATCTTTTCTCATTTGCCTTTTACTCAAACGCGTTGGAGTTGGACAACTTTTTCTCCTCC
TTTGCTCGTTTTTGCAAGAGCTTTAATTTATTGTGAGACTTCCCCATGTTATTTCTGCGC
AATTACGAAAGCAGCTATGAGACCTTGACAAACATAGGAGCTGCAATATTTGTATACATT
ATGCTAACTGATGTGTTCAGTAATAGTTTTAGCAATTTCATCGGTTGTTCATTCATGTGG
TATATATTATTGGTTTAAAGGATGCTCAATCTCCTCATTTCCTGTTGTCTTTATTTTGGT
TTTCCAACTTCATTATCATTGTACGAGATGTCATCACATAAAAAAATGATGGCACCAACT
TATTCCTCTCAAAAAAGAAAGCATCACTAGTCAGCAGAAAGAGCTTCTAAATTTAAGCTC
AGAAGACATAATCTGTATGTACAGTTGTCAATTGACAAAAAAAATGCTTTTATCATGGTG
ACGAGTGAAAAATGTTGATTCAGCAAGCTGATGTCTCTTGATTGAGTGCACGAAAGAAGC
ATTATGTTTTGGAGTGGGTGCTGATTTACCTAGACGACAAGCTCTAGTGATCAGAGAATC
ATCTTCCGCTGCCAAAAAAGGAAAATGACTATATCCAGTTGATTTAAATTTGAACAAAGT
CTCATGTAAACTTCACAAGGGACACTGAAGACTACCCCATAAAGAGTAATGGAGATGTGC
AGCGGTGTATTCCTTGTACTTTCATCGATCTTCGTTGGGATTTCTCTTTTCTTTCTCTGC
TGCTGTATATTCCTCCCATTCTCTTTGTCCTTAACCTGCTCGTTCCCTTATTTCAGATAA
ATCGCATCTCACATTGTTGCATGGGCCCAAAGAATAAGCTGAAATTTTCTCTCAAGTCTT
TCTGGGATGGAAAGAGCAGTGCTGAGGATTCAGTCATCCACCTGAACACATGTCTGATGC
TGGCATTAAGTACATCCTAGCAACACAACCGCAATTCTTGGTGCCATCCCGTAATCAGGC
GATTCAAATGAGCCACATGCTCTCGGCCGATCTCAACACTTTCAAACGTTTACCTCAATT
GGAGTCAACTATAACAATACACATTGTAATACATCTTGCGTCTTCACGCCCCTATTTACT
GTCAAACTCATTTTTGCTTCCATATTTGGTTCAGGTACTTTGTAGCAATTTTAATAATTT
ACAATAATTCCTAGTATACTATAAGGAATTGCTGGCTGTAAGTGTGTTTTAAGATGTTTC
ACACCTACTTTTACCTTATATTGTCAGGTTGTTAATTTCACTTATGCATTCATTGTAATT
ATCATTTAGTTGACATAATAATGTAAAAAATATGTCATTGATAGAAGTTAATCAAAAGAT
CATGGATTATAGACCTTACTTAATCAAGGTCTTGTCCAATTTGCCTTGTGCAGTTTGTTT
GATTTTCTTCCATTTCAGATTACCATGTTTTGTTGGTAGAGAGTCCTGACCCTTCGACAA
GGTCCCTGAATTTTTATTCCATAACAAGAGTGCACGTAGATTAGTTGCACGTCTCCATTT
CACATGTACCA