Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g016720.1.1
CDS Infomation

9-cis-epoxycarotenoid dioxygenase2
Sequence

ATGACTTCTACAATTGCAAATTATAGAGTTTCTCACTCCTTTTCACCATCTACTTCCTAT
TCACTTGATTTCACCCTTCCTTCAAAATCAATCTCCATGAAAAATCACACTACAACAAAA
ACTAAAATCCATTCTGCTTTACTCACTTTACCGAAACAAAACAATACCCCCAAAAATCAA
CCACAATTTCAAACATCTCATTGGAATTTTTTCCAAAAAGCAGCAGCAAAAGCTTTAGAT
ATAGTAGAAAGCGCGTTAGTCTCACGCGAACTACAAAACCCACTTCCCAAAACAGCTGAC
CCACGTGTACAAATCGCCGGAAACTTTGCTCCGGTACCGGAGCAATCAGTCCGGCATAAC
CTTCCCGTTACAGGGACGATCCCTGATTGCATTAATGGGGTTTATGTCAGGAATGGAGCG
AACCCGCTTTTTGAACCGGTTGCCGGTCATCATCTTTTTGACGGTGACGGCATGGTTCAT
GCTGTCACTGTCGAAAATGGTTCAGTGAGCTATTCTTGCCGTTTTACTGAAACGGAAAGA
TTAGTTCAAGAGCGTGAATTGGGTCACCCTGTTTTTCCTAAAGCTATTGGTGAACTCCAT
GGTCATTCTGGAATTGCGAGGCTATTGTTGTTCTATGCCCGTGGAGTTTTCGGGCTTGTA
GATCATAGCCATGGGACTGGAGTTGCTAATGCTGGATTGGTTTTCTTTAATAACAGGCTT
TTAGCAATGTCTGAAGATGATGTACCTTATCATGTTCAAGTATTGCCTTCTGGCGATCTT
CAAACAGTTGGTAGGTACAATTTTGATGATCAATTGAAAAGCACAATGATAGCTCACCCG
AAAATTGATCCAGTTTCGGGTGAGCTTTTTGCTTTGAGCTACGATGTAGTTCAAAAGCCT
TACTTGAAATCCTTCAAGTTTTCTCCAGACGGGGAAAAATCTCCCGATGTTGAAATCCCA
CTGGATGTTCCAACGATGATGCATGATTTTGCGATTACCGAGAATTACGTTGTAATTCCT
GATCAGCAAGTTGTGTTTAAGCTTCAAGAAATGATCAAAGGAGGCTCCCCTGTGATTTAT
GACAAAAATAAGAAATCAAGGTTCGGAATTCTACCCAAAAATGCTGAAAACTCTGAGAAT
ATTATTTGGGTTGAATCAGCCGAAACGTTCTGTTTTCACCTATGGAATGCTTGGGAAGAA
CCAGAAACAGATGAAGTCATTGTTATTGGTTCATGCATGACACCACCAGACTCAATTTTC
AATGAATGTAATGAGAATTTAAAGAGTGTTTTATCTGAAATAAGGCTCAATTTGAAGACA
GGAGAGTCTACAAGACGACAACTACTTTCACCCTCAGATCAGGTAAATTTAGAAGCTGGA
ATGGTGAACAGAAACAAACTCGGTAGAAAAACACAATTCGCTTATCTTGCAATTGCAGAG
CCATGGCCAAAAGTATCTGGATTTGCAAAAGTCGATTTATCGACAGGGGAAATTAAAAAA
CATATATATGGAGATAAACGATATGGAGGTGAACCATTATTTTTACCAAGAAATGTGAAC
TCAGAAAAAGAGGACGATGGATATATTCTTGCATTTTGCCACGACGAGAAGACATGGAAA
TCAGAACTACAAATTGTAAATGCCATGACTCTAGAATTAGAAGCTACTGTCAAGCTACCT
TCAAGAGTTCCATATGGTTTTCATGGGACATTCATTAGCTCAAAGGACTTGCAAAATCAA
GTATAA

Peptide Sequence

PEP ID

Solyc08g016720.1.1
PEP Infomation

9-cis-epoxycarotenoid dioxygenase2
Sequence

MTSTIANYRVSHSFSPSTSYSLDFTLPSKSISMKNHTTTKTKIHSALLTLPKQNNTPKNQ
PQFQTSHWNFFQKAAAKALDIVESALVSRELQNPLPKTADPRVQIAGNFAPVPEQSVRHN
LPVTGTIPDCINGVYVRNGANPLFEPVAGHHLFDGDGMVHAVTVENGSVSYSCRFTETER
LVQERELGHPVFPKAIGELHGHSGIARLLLFYARGVFGLVDHSHGTGVANAGLVFFNNRL
LAMSEDDVPYHVQVLPSGDLQTVGRYNFDDQLKSTMIAHPKIDPVSGELFALSYDVVQKP
YLKSFKFSPDGEKSPDVEIPLDVPTMMHDFAITENYVVIPDQQVVFKLQEMIKGGSPVIY
DKNKKSRFGILPKNAENSENIIWVESAETFCFHLWNAWEEPETDEVIVIGSCMTPPDSIF
NECNENLKSVLSEIRLNLKTGESTRRQLLSPSDQVNLEAGMVNRNKLGRKTQFAYLAIAE
PWPKVSGFAKVDLSTGEIKKHIYGDKRYGGEPLFLPRNVNSEKEDDGYILAFCHDEKTWK
SELQIVNAMTLELEATVKLPSRVPYGFHGTFISSKDLQNQV*

Transcript Sequence

Transcript ID

Solyc08g016720.1.1
Transcript Infomation

9-cis-epoxycarotenoid dioxygenase2
Sequence

ATGACTTCTACAATTGCAAATTATAGAGTTTCTCACTCCTTTTCACCATCTACTTCCTAT
TCACTTGATTTCACCCTTCCTTCAAAATCAATCTCCATGAAAAATCACACTACAACAAAA
ACTAAAATCCATTCTGCTTTACTCACTTTACCGAAACAAAACAATACCCCCAAAAATCAA
CCACAATTTCAAACATCTCATTGGAATTTTTTCCAAAAAGCAGCAGCAAAAGCTTTAGAT
ATAGTAGAAAGCGCGTTAGTCTCACGCGAACTACAAAACCCACTTCCCAAAACAGCTGAC
CCACGTGTACAAATCGCCGGAAACTTTGCTCCGGTACCGGAGCAATCAGTCCGGCATAAC
CTTCCCGTTACAGGGACGATCCCTGATTGCATTAATGGGGTTTATGTCAGGAATGGAGCG
AACCCGCTTTTTGAACCGGTTGCCGGTCATCATCTTTTTGACGGTGACGGCATGGTTCAT
GCTGTCACTGTCGAAAATGGTTCAGTGAGCTATTCTTGCCGTTTTACTGAAACGGAAAGA
TTAGTTCAAGAGCGTGAATTGGGTCACCCTGTTTTTCCTAAAGCTATTGGTGAACTCCAT
GGTCATTCTGGAATTGCGAGGCTATTGTTGTTCTATGCCCGTGGAGTTTTCGGGCTTGTA
GATCATAGCCATGGGACTGGAGTTGCTAATGCTGGATTGGTTTTCTTTAATAACAGGCTT
TTAGCAATGTCTGAAGATGATGTACCTTATCATGTTCAAGTATTGCCTTCTGGCGATCTT
CAAACAGTTGGTAGGTACAATTTTGATGATCAATTGAAAAGCACAATGATAGCTCACCCG
AAAATTGATCCAGTTTCGGGTGAGCTTTTTGCTTTGAGCTACGATGTAGTTCAAAAGCCT
TACTTGAAATCCTTCAAGTTTTCTCCAGACGGGGAAAAATCTCCCGATGTTGAAATCCCA
CTGGATGTTCCAACGATGATGCATGATTTTGCGATTACCGAGAATTACGTTGTAATTCCT
GATCAGCAAGTTGTGTTTAAGCTTCAAGAAATGATCAAAGGAGGCTCCCCTGTGATTTAT
GACAAAAATAAGAAATCAAGGTTCGGAATTCTACCCAAAAATGCTGAAAACTCTGAGAAT
ATTATTTGGGTTGAATCAGCCGAAACGTTCTGTTTTCACCTATGGAATGCTTGGGAAGAA
CCAGAAACAGATGAAGTCATTGTTATTGGTTCATGCATGACACCACCAGACTCAATTTTC
AATGAATGTAATGAGAATTTAAAGAGTGTTTTATCTGAAATAAGGCTCAATTTGAAGACA
GGAGAGTCTACAAGACGACAACTACTTTCACCCTCAGATCAGGTAAATTTAGAAGCTGGA
ATGGTGAACAGAAACAAACTCGGTAGAAAAACACAATTCGCTTATCTTGCAATTGCAGAG
CCATGGCCAAAAGTATCTGGATTTGCAAAAGTCGATTTATCGACAGGGGAAATTAAAAAA
CATATATATGGAGATAAACGATATGGAGGTGAACCATTATTTTTACCAAGAAATGTGAAC
TCAGAAAAAGAGGACGATGGATATATTCTTGCATTTTGCCACGACGAGAAGACATGGAAA
TCAGAACTACAAATTGTAAATGCCATGACTCTAGAATTAGAAGCTACTGTCAAGCTACCT
TCAAGAGTTCCATATGGTTTTCATGGGACATTCATTAGCTCAAAGGACTTGCAAAATCAA
GTATAA