Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc08g007110.3.1
CDS Infomation	Regulator of nonsense transcripts 1 homolog (AHRD V3.3 *** RENT1_ARATH)
Sequence	ATGGATTCTCAGCCGAACAATCTCTACGACACGGCGTCTCAGCCGGATACCGGCAACGAC GCATACACGTTTCTGGAATTCAACACACAAGGGGAAGAGTTTGATTATCCTGAATTTCAA GAGCTTTCACAGCCAATTCGATCTTCTGCGTGGCCAACACCGTCTGATTCTCTGGTATCT GAAGTACCTGATCGGCCTCCATCGTCGGAAGCGTCGCCGTCGACGAAATCACGGGGTGGA GGTGGGAATAGTAATGTTAGTAGTAGTAGTAATCAGGCGTCGGTTGTGGATGCATTGGCA GCGGGGATGAGTGGGTTGAATTTTGAAGAGACAGGGGATGATGAGGGTTTTGAGTATGGA AAAGGGGATTTTGGGGTTGAGCATGCTTGTAAGTACTGTGGAGTGACGAATCCTGCTTGT GTAGTTAGGTGCAATGTGCCATCTTGCCGTAAGTGGTTCTGTAATTCCAGAGGAAACACT TCGGGCTCACATATTGTTAATCACCTGGATTTAAGTCTGAAAGCTCACACCCACTACTCC CCTGGACTTGGTAGAGGTATATATAGTTTAAGCAAAAGGCAGTGCTGTGCCTCACTAGCT GCAGAAAGAGTGGGTGCTGCAGAAGAAGTGGATTTCTTCTGGCAGGGGCGTGTTTCAGAT AATGTGGTAGTCTCCTTTCGTCCCTGGCCCCTCCCTGTTCTCTCTGGGAACTTGTGTGAT GAAAAAGTGCGAGCAAAACACAAGGAGGTGTGTCTTCATAAAGATAGTCCACTTGGAGAA ACAATTCTAGAGTGCTACAATTGTGGATGCCGAAATGTCTTTCTTCTTGGGTTCATTTCT GCCAAGACAGAGAGTGTCGTCGTTCTTCTCTGTAGAGAACCTTGTCTAAGTGTTAATGCA TTAAAGGATATGAACTGGGACCTCAGTCAGTGGTGCCCACTCATTGATGACAGGTGCTTT TTACAGTGGCTTGTTAAGGTCCCTTCCGAGCAAGAACAGTTGAGAGCGCGCCAGATCAGT GCTCAACAAATCAACAAAGTAGAAGAATTGTGGAAGACAAATCCTGATGCTACCCTGGAA GATCTTGAGAAGCCTGGTGTGGATGATGAGCCTCAGCCTGTTGCCTTGAAGTATGAAGAT GCCTATCAGTATCAAAACATATTTGCACCATTGATCAAGCTTGAAGCTGACTATGATAAG ATGATGAAAGAGTCTCAAAGTAAAGACAATCTTACTATTCGATGGGATATTGGTCTCAAC AAGAAGCGCGTTGCATATTTTGTGTTCCCGAAGGAAGATAATGAGTTGCGTCTTGTACCT GGTGATGAGCTAAGGCTACGATATTCAGGGGATGCAGCTCATCCAGCCTGGCAATCTGTG GGGCACGTGGTAAAATTAACAGCTCAAGAAGAGGTTGCGCTTGAACTACGTGCCAGCCAG GGGGTTCCAATCGATGTCAACCACGGGTTTAGTGTTGACTTCGTTTGGAAAAGTACGAGT TTTGATCGGATGCAAAGTGCAATGAAGACCTTTGCAGTGGATGAGACTAGTGTCAGTGGG TATATTTACCATCATCTGTTAGGTCATGAAGTTGAGATGCAGATGGTCCGGAATACACTT CCACGTCGTTTTGGAGCTCCTGGTCTTCCGGAGCTTAATGCATCTCAGGTTTTTGCTGTA AAAAGCGTTCTTCAAAAGCCCATCAGTTTAATTCAAGGCCCACCTGGAACTGGAAAAACT GTCACCTCTGCCGCCATTGTGTATCATATGGCGAAACAAGGCCAAGGACAGGTTTTGGTC TGTGCCCCCAGTAACGTGGCTGTGGACCAATTAGCTGAGAAGATAAGTGCTACCGGTCTA AAGGTGGTCAGGCTCTGTGCCAAGTCGAGGGAAGCTGTCAGTTCTCCTGTCGAGCATTTA ACCCTTCACTATCAGGTTCGCCATCTTGACACGTCTGAGAAGAGTGAACTTCATAAGTTA CAGCAACTGAAAGATGAACAAGGAGAGCTCTCCAGTAGTGATGAGAAGAAATATAAAGCT CTGAAAAGGGCAACAGAGAGGGAAATAGCTCAGAGTGCTGATGTCATTTGTTGCACATGC GTTGGTGCTGGAGATCCTAGATTGGCTAATTTCAGATTCCGCCAGGTGCTCATTGATGAA TCCACTCAGGCTACTGAGCCTGAATGTCTCATTCCTTTGGTTCTTGGTGCAAAGCAGGCT GTTCTTGTCGGTGACCATTGCCAGCTTGGACCTGTTATTATGTGCAAGAAAGCGGCTCGT GCTGGGCTGGCTCAATCTCTCTTTGAACGCCTTGTGTTTCTAGGCGTGAAACCTATTAGG TTACAGGTACAATACCGTATGCACCCTGCATTGTCTGAGTTCCCATCAAATAGCTTTTAT GAAGGTACACTTCAAAATGGTGTAACCGTCAATGAAAGACTATCATCAGGAATTGATTTT CCTTGGCCTGTGCCGAACCGTCCCATGTTCTTCTATGTTCAGATGGGACAAGAGGAGATT AGTGCTAGTGGAACTTCCTATCTGAATAGAACTGAAGCTGCAAATGTGGAGAAGATTGTG ACTACATTTCTGAAGAGTGGGGTAGTCCCTAGTCAGATTGGGGTCATAACACCATATGAG GGTCAACGGGCATATATAGTGAATTATATGGCAAGAAATGGTTCCCTAAGACAACAACTC TACAAGGAAATCGAGGTTGCAAGTGTAGATTCATTTCAAGGGAGGGAGAAGGATTATATT ATTTTGTCATGTGTCAGGAGTAATGAACATCAGGGCATTGGGTTCCTTAATGATCCACGC AGGCTTAATGTTGCTCTTACCCGTGCTCGTTATGGTATTGTTATCCTGGGAAATCCTAAA GTCTTGAGCAAACAGCCTCTGTGGAATGGTTTGTTAACACACTACAAGGAGCACGAGTGC TTGGTTGAAGGTCCTCTCAATAACTTAAAGCAGAGCATGGTTCAATTTCAGAAGCCCAAA AAGATCTACAATGAGCGCAGACTCTTCTTTGGTGGTGGACCTGGAGCAGTTCAAGGTGAC AGTTTCGGATCTGCTTCAGGCCCCAGTGCTGACAGGAGAAATAGTCGTCCTAGGGGTATG GTGAACTTGAACCTCCCTCCACCGGCTGTGAATTGTTTGTTTGAATGTTGTATGGCACTT AGGATTCCTGCTTTGGAATATGTTTCTGTTTCATCTGATTTGTCAGGAACCCTGCTTTTG CTGTTCTTCGTATTGTAG

Peptide Sequence

PEP ID	Solyc08g007110.3.1
PEP Infomation	Regulator of nonsense transcripts 1 homolog (AHRD V3.3 *** RENT1_ARATH)
Sequence	MDSQPNNLYDTASQPDTGNDAYTFLEFNTQGEEFDYPEFQELSQPIRSSAWPTPSDSLVS EVPDRPPSSEASPSTKSRGGGGNSNVSSSSNQASVVDALAAGMSGLNFEETGDDEGFEYG KGDFGVEHACKYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLDLSLKAHTHYS PGLGRGIYSLSKRQCCASLAAERVGAAEEVDFFWQGRVSDNVVVSFRPWPLPVLSGNLCD EKVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNA LKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLE DLEKPGVDDEPQPVALKYEDAYQYQNIFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLN KKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRASQ GVPIDVNHGFSVDFVWKSTSFDRMQSAMKTFAVDETSVSGYIYHHLLGHEVEMQMVRNTL PRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV CAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKL QQLKDEQGELSSSDEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANFRFRQVLIDE STQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVFLGVKPIR LQVQYRMHPALSEFPSNSFYEGTLQNGVTVNERLSSGIDFPWPVPNRPMFFYVQMGQEEI SASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQL YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPK VLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFFGGGPGAVQGD SFGSASGPSADRRNSRPRGMVNLNLPPPAVNCLFECCMALRIPALEYVSVSSDLSGTLLL LFFVL*

Transcript Sequence

Transcript ID	Solyc08g007110.3.1
Transcript Infomation	Regulator of nonsense transcripts 1 homolog (AHRD V3.3 *** RENT1_ARATH)
Sequence	TACAATTAATTTTTTTCCCTTAAAAAAAGAATATTCATCATATTTTTTTCTTCTTCATCG GCTCTTTCACCGAACCCTAACTTTCCCCATTTTTTTTCCAAACCCTAAAATTCGAACAGT CTACAGAAATTTCACTGCGAAAAATCCAAAATTTTCATCAATTTCATGCAAAAATCCAAC CTTTAGCGCTAGTTTTTCATAAACAATTTTTGATTTTGGTGAAAAAAAGTATACAGTGTA AGAAGCAGTTGAAGGATTTTTTTTTGACTATGGATTCTCAGCCGAACAATCTCTACGACA CGGCGTCTCAGCCGGATACCGGCAACGACGCATACACGTTTCTGGAATTCAACACACAAG GGGAAGAGTTTGATTATCCTGAATTTCAAGAGCTTTCACAGCCAATTCGATCTTCTGCGT GGCCAACACCGTCTGATTCTCTGGTATCTGAAGTACCTGATCGGCCTCCATCGTCGGAAG CGTCGCCGTCGACGAAATCACGGGGTGGAGGTGGGAATAGTAATGTTAGTAGTAGTAGTA ATCAGGCGTCGGTTGTGGATGCATTGGCAGCGGGGATGAGTGGGTTGAATTTTGAAGAGA CAGGGGATGATGAGGGTTTTGAGTATGGAAAAGGGGATTTTGGGGTTGAGCATGCTTGTA AGTACTGTGGAGTGACGAATCCTGCTTGTGTAGTTAGGTGCAATGTGCCATCTTGCCGTA AGTGGTTCTGTAATTCCAGAGGAAACACTTCGGGCTCACATATTGTTAATCACCTGGATT TAAGTCTGAAAGCTCACACCCACTACTCCCCTGGACTTGGTAGAGGTATATATAGTTTAA GCAAAAGGCAGTGCTGTGCCTCACTAGCTGCAGAAAGAGTGGGTGCTGCAGAAGAAGTGG ATTTCTTCTGGCAGGGGCGTGTTTCAGATAATGTGGTAGTCTCCTTTCGTCCCTGGCCCC TCCCTGTTCTCTCTGGGAACTTGTGTGATGAAAAAGTGCGAGCAAAACACAAGGAGGTGT GTCTTCATAAAGATAGTCCACTTGGAGAAACAATTCTAGAGTGCTACAATTGTGGATGCC GAAATGTCTTTCTTCTTGGGTTCATTTCTGCCAAGACAGAGAGTGTCGTCGTTCTTCTCT GTAGAGAACCTTGTCTAAGTGTTAATGCATTAAAGGATATGAACTGGGACCTCAGTCAGT GGTGCCCACTCATTGATGACAGGTGCTTTTTACAGTGGCTTGTTAAGGTCCCTTCCGAGC AAGAACAGTTGAGAGCGCGCCAGATCAGTGCTCAACAAATCAACAAAGTAGAAGAATTGT GGAAGACAAATCCTGATGCTACCCTGGAAGATCTTGAGAAGCCTGGTGTGGATGATGAGC CTCAGCCTGTTGCCTTGAAGTATGAAGATGCCTATCAGTATCAAAACATATTTGCACCAT TGATCAAGCTTGAAGCTGACTATGATAAGATGATGAAAGAGTCTCAAAGTAAAGACAATC TTACTATTCGATGGGATATTGGTCTCAACAAGAAGCGCGTTGCATATTTTGTGTTCCCGA AGGAAGATAATGAGTTGCGTCTTGTACCTGGTGATGAGCTAAGGCTACGATATTCAGGGG ATGCAGCTCATCCAGCCTGGCAATCTGTGGGGCACGTGGTAAAATTAACAGCTCAAGAAG AGGTTGCGCTTGAACTACGTGCCAGCCAGGGGGTTCCAATCGATGTCAACCACGGGTTTA GTGTTGACTTCGTTTGGAAAAGTACGAGTTTTGATCGGATGCAAAGTGCAATGAAGACCT TTGCAGTGGATGAGACTAGTGTCAGTGGGTATATTTACCATCATCTGTTAGGTCATGAAG TTGAGATGCAGATGGTCCGGAATACACTTCCACGTCGTTTTGGAGCTCCTGGTCTTCCGG AGCTTAATGCATCTCAGGTTTTTGCTGTAAAAAGCGTTCTTCAAAAGCCCATCAGTTTAA TTCAAGGCCCACCTGGAACTGGAAAAACTGTCACCTCTGCCGCCATTGTGTATCATATGG CGAAACAAGGCCAAGGACAGGTTTTGGTCTGTGCCCCCAGTAACGTGGCTGTGGACCAAT TAGCTGAGAAGATAAGTGCTACCGGTCTAAAGGTGGTCAGGCTCTGTGCCAAGTCGAGGG AAGCTGTCAGTTCTCCTGTCGAGCATTTAACCCTTCACTATCAGGTTCGCCATCTTGACA CGTCTGAGAAGAGTGAACTTCATAAGTTACAGCAACTGAAAGATGAACAAGGAGAGCTCT CCAGTAGTGATGAGAAGAAATATAAAGCTCTGAAAAGGGCAACAGAGAGGGAAATAGCTC AGAGTGCTGATGTCATTTGTTGCACATGCGTTGGTGCTGGAGATCCTAGATTGGCTAATT TCAGATTCCGCCAGGTGCTCATTGATGAATCCACTCAGGCTACTGAGCCTGAATGTCTCA TTCCTTTGGTTCTTGGTGCAAAGCAGGCTGTTCTTGTCGGTGACCATTGCCAGCTTGGAC CTGTTATTATGTGCAAGAAAGCGGCTCGTGCTGGGCTGGCTCAATCTCTCTTTGAACGCC TTGTGTTTCTAGGCGTGAAACCTATTAGGTTACAGGTACAATACCGTATGCACCCTGCAT TGTCTGAGTTCCCATCAAATAGCTTTTATGAAGGTACACTTCAAAATGGTGTAACCGTCA ATGAAAGACTATCATCAGGAATTGATTTTCCTTGGCCTGTGCCGAACCGTCCCATGTTCT TCTATGTTCAGATGGGACAAGAGGAGATTAGTGCTAGTGGAACTTCCTATCTGAATAGAA CTGAAGCTGCAAATGTGGAGAAGATTGTGACTACATTTCTGAAGAGTGGGGTAGTCCCTA GTCAGATTGGGGTCATAACACCATATGAGGGTCAACGGGCATATATAGTGAATTATATGG CAAGAAATGGTTCCCTAAGACAACAACTCTACAAGGAAATCGAGGTTGCAAGTGTAGATT CATTTCAAGGGAGGGAGAAGGATTATATTATTTTGTCATGTGTCAGGAGTAATGAACATC AGGGCATTGGGTTCCTTAATGATCCACGCAGGCTTAATGTTGCTCTTACCCGTGCTCGTT ATGGTATTGTTATCCTGGGAAATCCTAAAGTCTTGAGCAAACAGCCTCTGTGGAATGGTT TGTTAACACACTACAAGGAGCACGAGTGCTTGGTTGAAGGTCCTCTCAATAACTTAAAGC AGAGCATGGTTCAATTTCAGAAGCCCAAAAAGATCTACAATGAGCGCAGACTCTTCTTTG GTGGTGGACCTGGAGCAGTTCAAGGTGACAGTTTCGGATCTGCTTCAGGCCCCAGTGCTG ACAGGAGAAATAGTCGTCCTAGGGGTATGGTGAACTTGAACCTCCCTCCACCGGCTGTGA ATTGTTTGTTTGAATGTTGTATGGCACTTAGGATTCCTGCTTTGGAATATGTTTCTGTTT CATCTGATTTGTCAGGAACCCTGCTTTTGCTGTTCTTCGTATTGTAGAGTTCTTCTCAAA ATGGTTTGGAGAAACTAGGAAGAAGCATTTTTATTAATATTAGAATCTCAAGTATATTTA TACATGTATTTGTCTGCTTTCCTAAGGATATTTTTTAAATTTTTTGGTAGGTTCTTATAT GGCACCTGGTGTACCCAATGGTACTCAGAAACCTGGTGTTCATCCTGCTGGTTATCCGAT GCCTCGGGTTCCCTTTCCCCCTTACCATGGAGGCCCTCCACAACCATATGCAATTCCTAC TCGTGGTGCTGTCCATGGACCTGTTGGAGCTGTTCCTCATGTTCCACAACCAGGCAGCCG GGGTTTTGGGGCTGGACGTGGCAACGCCAATGCCCCAATTGGTAGTCATCTCCCTCACCA TCAAGGGTCCCAGCAGCCGGTCGGAAGTATTGGATCTAACTTCAACTTTCCTGCATTAGA TAATCCAAACAGTCAGCCTTCCATCGGAGGACCTTTATCTCAACCTGGATATGCTTCTAA TATGGCTATCCAGGGACCAGGCCAGTCATTCCGCGATGGACTTTCTATGGGTAGCATGTC ACAGGATTTTGTGGGAGATGATTTCAAGAGCCAGGGGTCTCATGTTCCATATAATGTTGC TGACTTCTCTACACAGGCTTCTCAAGGTGCATATGCTGTTGATTATTCAACTCAAGGAGC ACAGGCTGGGTTTCCAGGGAATTTTTTAAACCAGAACTCTCAATCTGGATACTCCCGTTT TGGTTCAGGAAATGAATTCATGTCTCAGGATTATATGGCTCATGGTTCGCAAGGTCTATT TACGCAAGCTGGATATAATGATCCATTACAAGATGATGGTTCACAGAATCATTTTGGCAT GTCCAATGTTAATTCTCTTCAGTCTCAGAGTTTACTCAATCCAATTTATTCCCAGCCATT TGCGCACTACAATACACAGCCATTGAACTTGCAAAGTTCTCAGCCTCAACAGCAGCAAGG GCCACAAGGCCAGTGCTTCCAAAATCAGAAACTCCAGTACAATAGTTGAAGACGGCATGG TTGTTATATGATGATTGATGGGTTATAGTTTTGCATCCAGCAATTTGGTTTGTGCTGTCA ACATGTGACCGTCTTATCTGACCTTATGATGAGGTAAAAGAGTTTGTCAATAATTCAGGT CAGTTGGTGACATATTCCTTGCCAATAATCTTGAATGTCGAGTCAGAGGGCTGACATGAT GGAAGTCTTCTTCTCTGGTCAAGGTAACCAAGCACAGGACATCCGGTGCTGAGAAAGAAC AAATAACCCATGTTATCTTCGTGAAGTTTTACGTACTGTTTGAAAAGAAGGTATACTGTT TCTCCATGAGAGAAAGGTTACATGGTGTGGTATTGAGCCAGAAGGGTGGGTTTTATTCAG GACACGGAGGTTGTTACTCGCGAATTATAAGGAGTACATCATTGTTTGAAGCTGCGATCA TATCTTTTGTACAGTGTCCAGGCAAAATCCAGCTAACCCTTTCAGCTCGTCCTGACATGT AATTATACTCTCTAGTTATTAGTATTGCAGGGATGATGATGATAGATGTGTTTGTTATTG CATCACTTATACGTTATTGGGTACATAAACATGCAGGGTTTTGGTCTTTTATTTGAATTG GGTTGCTTGTAATCCCAGTATCATTTTTGTGGATGTCTTACGCGATGCATTTTGCTCGTC AATGATGGAATAATTTACGAGTACGTAAGCACTGCATGTGTTCTTTCTGCTTATGTCCCT TCTATTTCTAACTTTGAATAACATGTGTTAATCGATTGCCTCTCGAGTTGTTAGAAAAGC AGTTGTTGAAGTGCATGTGGCTTTTAAGCTGCGTTAGCGATGTGTTTTCTCGTTACATAG TTTAAGCTATACTTGGTAGTAATGCCTGGTCCTGTTTTTGTTTACAATGCCTGTTCCACA TTCTTTTGATTCCGAGTGTTTGTCGAAAACATTGTTTTTCAATAAAGGTAGGAGTAAAGT CTCCGTGCATTATCTTTTTTGGATATCAGGTGTTGTATGACGATTAGATTTGGCATATTG GTTGAG