Gene sequences

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SNP Detection
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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc08g006870.3.1
CDS Infomation	Phototropic-responsive NPH3 family protein (AHRD V3.3 *** G7I878_MEDTR)
Sequence	ATGAAGTTCATGAAGTTGGGATCAAAACCAGATACATTTCAAGATCAAGGAAAAGGTGTA AGATACGTGTCATCTGAGCTGGCTACAGATGTTACCATCATTGTTGGTGAAGTAATATTT TATCTTCACAAGTTTCCTCTGTTGTCCATGAGCAACAAGCTGCAAAAGCTTGTTTCAAAA GCAAATGAAGAGAATTCTGATGTAATTCAGTTAGTTGATTTTCCTGGTGGACCTAGAGCT TTTGAGATTTGCGCCAAATTTTGCTATGGAATGACAGTGACCCTCAATCCATACAATGTT GTTGCTGCACGTTGTGCAGCTGAGTACCTTGAGATGGCGGAAGAAGTTGACCGAGGAAAC CTTATCTTTAAAATCGAGGTATTCCTTAATTCCAGTGTTTTCCGCAGCTGGAAAGATTCA ATTATTGTTCTACAAACCACCAAGTCTCTTCGACCATGGTCTGAAGATCTGAAGGTGGTA GGTAGATGTATAGATTCTATTGCATCCAAAACGTCAATGGATCCTTCAAGTATTACATGG TCCTACACGTACAACAGAAAAGTGGCAGTCTCAGATAAGATCACAGAAGTTGGGATGAAA TTCCCTGGAAAACTTGAATCCGTGCCTAAGGACTGGTGGGTAGAAGATATATGTGAACTT GAGATAGATCTTTACAAACGAGTTATGGTTGCCGTTAAATCCAAAGGAAGAATGGATGGT AGTGTTATTGGCGAGGCACTAAGAACTTATGCCATGAGATGGCTGCCTAATTCTATTGAG GCTTTGGTATCTGAAGCTCATAGCAGAAGGAACAAGTCGTTGTTAGAAACTATAATCTGC TTATTGCCTTATGACAAAGGTGTTACTTGTTCGTGTTGTTTCTTGCTTAAGTTACTGAAA GTCGCTATTCTTGTCGGGGCAGATGATTCATCAAGGGATGAACTTGTAAAAAGTATCAGC TTAAAGCTGGATGAGGCTTCCGTCAACGATCTTTTGATTCCAGCAAGGTCTCCCCAAGCT ACTGTCTATGATGTTGAACTAGTGAAGTGCCTTGTGAATCGATTCATGGCTCGTGAAAGA AGTAGTAGGGATAAGAACATTCCCCCGAAAAGCACCAATGATTTTATCTTGGGGCATGCA TCATGGTTGAAAGTCGGTAAATTAATTGATGGCTATCTTGCAGAAATTGCTCGTGATCCA AATGTCAGTCTCTCTATTTTCATTGAACTGTTGCAATCAATTCCAGACTCAGCAAGACCA ATCCATGATGCATTATATGAGGCAATCGATATCTATCTGCAGGAACACTCAAGCTTGACA AAAGCTGAGAAAAAACATTTATGTGGTCTCATGGATGTCAGGAAATTAACAATGGATGCA TCTATGCATGCTGCACAAAACGAACGTCTGCCTCTCCGGACAGTCGTTCAAGTCCTGTTC TTTGAGCAAATTAGAGCAGCTGCTGGAGTACAGACCTTAAATCACAGAAATACTGATGCT GTAGATTCCTCTAGGATGACTGAAAAGGAATATTGGCAAAAAACATTACCAGAGAAGCAG AATGTATCGAAGTCATCGAGTGAAATAAAGATAAAAGGTGAAGATCCACAGAAGAACATG AAACTGGTAAAGAAAGGTAGCAAGAACAGAAGTAGTGGACCACAGTTGATGCCATCAAGA TCAAGGAGAATATTTGACAAGCTGTTTATTGGTAAGGTGTCTGGTAACGGCGAAAACCGG AGCTCTGAGACATCTGGTAGTTCTCAGAGTCCAACTTTAAGGATTATTCAAGGAGAAATG AAGTCATCTTGTGCATCTTCAAGAAATAGGAGGAATTCCATATCATAA

Peptide Sequence

PEP ID	Solyc08g006870.3.1
PEP Infomation	Phototropic-responsive NPH3 family protein (AHRD V3.3 *** G7I878_MEDTR)
Sequence	MKFMKLGSKPDTFQDQGKGVRYVSSELATDVTIIVGEVIFYLHKFPLLSMSNKLQKLVSK ANEENSDVIQLVDFPGGPRAFEICAKFCYGMTVTLNPYNVVAARCAAEYLEMAEEVDRGN LIFKIEVFLNSSVFRSWKDSIIVLQTTKSLRPWSEDLKVVGRCIDSIASKTSMDPSSITW SYTYNRKVAVSDKITEVGMKFPGKLESVPKDWWVEDICELEIDLYKRVMVAVKSKGRMDG SVIGEALRTYAMRWLPNSIEALVSEAHSRRNKSLLETIICLLPYDKGVTCSCCFLLKLLK VAILVGADDSSRDELVKSISLKLDEASVNDLLIPARSPQATVYDVELVKCLVNRFMARER SSRDKNIPPKSTNDFILGHASWLKVGKLIDGYLAEIARDPNVSLSIFIELLQSIPDSARP IHDALYEAIDIYLQEHSSLTKAEKKHLCGLMDVRKLTMDASMHAAQNERLPLRTVVQVLF FEQIRAAAGVQTLNHRNTDAVDSSRMTEKEYWQKTLPEKQNVSKSSSEIKIKGEDPQKNM KLVKKGSKNRSSGPQLMPSRSRRIFDKLFIGKVSGNGENRSSETSGSSQSPTLRIIQGEM KSSCASSRNRRNSIS*

Transcript Sequence

Transcript ID	Solyc08g006870.3.1
Transcript Infomation	Phototropic-responsive NPH3 family protein (AHRD V3.3 *** G7I878_MEDTR)
Sequence	GTTATACAAAATCTCCTCCTTTGTTGCTGCATCATTCTCTCCAACCAGGCTGTGGTTGTG TCTTACACAGTCTACAAACCAATACACTTTTTTCTTCCCTCTCTTCTGACATTTTCTCTC TCATATTATCTCTTTCTCTCGTGCTATTTTCCCAAGATTTTGAACGACAATTTCATCAGT GTATTCAGTATACAGAGAGACACCTCATTATGTATATCTATACACAGAGAGAAAAAAGCT GCAGAAATCTTTGAAATTAGTGTCTTAGTTCTTTGTATAGTTAAAAAAAGAAGAAGAAAT TTTTAGGTGAAATAGTTAATTCAAAGGCGGCTACAAATTTAAGACTGAACCAACCAATTT TTCTTCTTTTTTTCTGCATGTGGGGTTTGTTCAAAGTTGAGTATTTTGTGGTTTAGTGTT AATGGGAGTTTATAAAGGGATTATGGGTATTGAAATTTTGGTGTTTTGGCTCGAGGGTCG AGGTGGGGGTGGGAGCAAAAGCAAAATCAAGATTATGCTCTGTTAGTCTGGTGTTTTTTT CTTCTTTTGTTTCTTTCTGTTTGTATTGGAGTTTAGGATGCTTCTTCACTGGTAATATTC TTCTTTGAGTGATAATAATGGAATCTTTACTTGTTTTATCTCTTGTGTCTGTGAATTTCA GTTAACCCCAGAAGTTGTGAGTTTGGTTTCTTGGGTTAGTTTGTTGTTTGTTGTGTTGTA TGACTGTTTACTTGTGCTAAAGTTTGAGTCTTTAAGCAGAATTTTTGGTTTTCTTGGGTT AGTTAGTTGTGTAATTGTGTGTATGTCTGTTGTATTGTTCTAAAGTTTGAGTCTTGAAGC AGAGGTTTGGGTTTTCTTGGTTTAGTTAGTTAGTTGTGTTGTATTTGTACTAAAGTTTGA GTCTTTAAGCAGAGATTTTGGTGTGTTTTTTTGGGTTAGTTTTAGTTGTGTGATTGTGTC TATGACTGTTGTATTGTTCTAAAAGTTGGAGTTTTTAAGCAGAGGTTTTGATTTTTTTTC TTGAGTGAAAAAAAGAAGAAGATGAAGTTCATGAAGTTGGGATCAAAACCAGATACATTT CAAGATCAAGGAAAAGGTGTAAGATACGTGTCATCTGAGCTGGCTACAGATGTTACCATC ATTGTTGGTGAAGTAATATTTTATCTTCACAAGTTTCCTCTGTTGTCCATGAGCAACAAG CTGCAAAAGCTTGTTTCAAAAGCAAATGAAGAGAATTCTGATGTAATTCAGTTAGTTGAT TTTCCTGGTGGACCTAGAGCTTTTGAGATTTGCGCCAAATTTTGCTATGGAATGACAGTG ACCCTCAATCCATACAATGTTGTTGCTGCACGTTGTGCAGCTGAGTACCTTGAGATGGCG GAAGAAGTTGACCGAGGAAACCTTATCTTTAAAATCGAGGTATTCCTTAATTCCAGTGTT TTCCGCAGCTGGAAAGATTCAATTATTGTTCTACAAACCACCAAGTCTCTTCGACCATGG TCTGAAGATCTGAAGGTGGTAGGTAGATGTATAGATTCTATTGCATCCAAAACGTCAATG GATCCTTCAAGTATTACATGGTCCTACACGTACAACAGAAAAGTGGCAGTCTCAGATAAG ATCACAGAAGTTGGGATGAAATTCCCTGGAAAACTTGAATCCGTGCCTAAGGACTGGTGG GTAGAAGATATATGTGAACTTGAGATAGATCTTTACAAACGAGTTATGGTTGCCGTTAAA TCCAAAGGAAGAATGGATGGTAGTGTTATTGGCGAGGCACTAAGAACTTATGCCATGAGA TGGCTGCCTAATTCTATTGAGGCTTTGGTATCTGAAGCTCATAGCAGAAGGAACAAGTCG TTGTTAGAAACTATAATCTGCTTATTGCCTTATGACAAAGGTGTTACTTGTTCGTGTTGT TTCTTGCTTAAGTTACTGAAAGTCGCTATTCTTGTCGGGGCAGATGATTCATCAAGGGAT GAACTTGTAAAAAGTATCAGCTTAAAGCTGGATGAGGCTTCCGTCAACGATCTTTTGATT CCAGCAAGGTCTCCCCAAGCTACTGTCTATGATGTTGAACTAGTGAAGTGCCTTGTGAAT CGATTCATGGCTCGTGAAAGAAGTAGTAGGGATAAGAACATTCCCCCGAAAAGCACCAAT GATTTTATCTTGGGGCATGCATCATGGTTGAAAGTCGGTAAATTAATTGATGGCTATCTT GCAGAAATTGCTCGTGATCCAAATGTCAGTCTCTCTATTTTCATTGAACTGTTGCAATCA ATTCCAGACTCAGCAAGACCAATCCATGATGCATTATATGAGGCAATCGATATCTATCTG CAGGAACACTCAAGCTTGACAAAAGCTGAGAAAAAACATTTATGTGGTCTCATGGATGTC AGGAAATTAACAATGGATGCATCTATGCATGCTGCACAAAACGAACGTCTGCCTCTCCGG ACAGTCGTTCAAGTCCTGTTCTTTGAGCAAATTAGAGCAGCTGCTGGAGTACAGACCTTA AATCACAGAAATACTGATGCTGTAGATTCCTCTAGGATGACTGAAAAGGAATATTGGCAA AAAACATTACCAGAGAAGCAGAATGTATCGAAGTCATCGAGTGAAATAAAGATAAAAGGT GAAGATCCACAGAAGAACATGAAACTGGTAAAGAAAGGTAGCAAGAACAGAAGTAGTGGA CCACAGTTGATGCCATCAAGATCAAGGAGAATATTTGACAAGCTGTTTATTGGTAAGGTG TCTGGTAACGGCGAAAACCGGAGCTCTGAGACATCTGGTAGTTCTCAGAGTCCAACTTTA AGGATTATTCAAGGAGAAATGAAGTCATCTTGTGCATCTTCAAGAAATAGGAGGAATTCC ATATCATAAGAAATTCATGTAGATTCATGTAGTCTTTTAGATTCATCCATGTGTGTAAGA ATCAAATTTGTGTAAAAAGTGGTTGACTTTGTTGAAATAGTTAAGGTGTTTAATCATCAT AGCACTCCCTCCATGTTT