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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g006860.3.1
CDS Infomation

Patatin (AHRD V3.3 *** K4CIH4_SOLLC)
Sequence

ATGGCAACTACTAAATCTTTTTTAATTTTAATTTTTATGATATTAGCAACTACTAGTTCA
ACATTTGCTACAGAAGAAATGGTGACTGTTCTTAGTATTGATGGAGGTGCAATAAGGGGA
ATCATTCCAGGTGTCATTCTTAGATATCTCGAAGCAGAACTTCAGAGAATTGACAATAAT
ACAGATGCAAGAGTGGCTGATTACTTTGATCTAATTGGAGGAACAAGTACTGGAGGATTA
GTGACTGCTATGTTAACTACTCCAAATGAAAACAATAGACCCTTTGCTGCTGCCAATGAA
ATAGTACCTTTTTACTTCGAACATGGCCCAAAGATTTTTGAACCTAGTGGTAATCCACTT
TTTGGCCCACAATATAATGGAACATATCTTATGCAAGTTATTCAAGAAAAAGTTGGAGAA
ACTTTTTTGAATCAAACTTTGACAGAAGTTGTCATCTCAAGCTTTGACATCCAAACAAAT
AAGCCAGTAATATTCACTAAGTCAAGTTTAGCGAAATCTCCAGAATTGAACGCTAAGATG
TATGACATATGTTATTCCACAGCAGCAGCTCCAACATATTTTGCTCCACTTGGATTTAAT
ACTAGTCATAATGGAGATCAATATAGGTTCAATCTTGTTGATGGTGGTGTTGCTACTGTT
GGTGATCCGGCGTTATTATCAGTTAGCGTTGCTACGAAACTTGCAGAAGAGGATCCAGCA
TTTTCTTCAATTAGGTCATTGAATTTCAAAAGAATGTTGTTGCTCTCATTAGGCACTGGC
ACTACATCAGATTTTGATAAAACATATACAGCAGAACAGGCAGCTACATGGGGTATTTTA
CAATGGGGATCAGCTATACAAGCAATGACTGGTGCAGCAAGTTCGTACATGACTGATTAT
TATCTTTCTACTGTTTTTCAAGCTCTTGATTCACAAGACAATTACCTCAGGGTCCAAGAC
AATGCATTAACAGGCACAACTACTGCATGGGATGATGCTTCTATGGCTAATATGCTATTA
TTAGAACAAGTTGGTGAAAACTTACTGAAGAAACAAGTTTCCAATGATGAAACCTATGAG
CAAGCTCTGACTAGGTTTGCAGAAAAGCTCTCTGCTCAGAAGAAACTTCGAGAAAACAAA
GCGTCTTATTAG

Peptide Sequence

PEP ID

Solyc08g006860.3.1
PEP Infomation

Patatin (AHRD V3.3 *** K4CIH4_SOLLC)
Sequence

MATTKSFLILIFMILATTSSTFATEEMVTVLSIDGGAIRGIIPGVILRYLEAELQRIDNN
TDARVADYFDLIGGTSTGGLVTAMLTTPNENNRPFAAANEIVPFYFEHGPKIFEPSGNPL
FGPQYNGTYLMQVIQEKVGETFLNQTLTEVVISSFDIQTNKPVIFTKSSLAKSPELNAKM
YDICYSTAAAPTYFAPLGFNTSHNGDQYRFNLVDGGVATVGDPALLSVSVATKLAEEDPA
FSSIRSLNFKRMLLLSLGTGTTSDFDKTYTAEQAATWGILQWGSAIQAMTGAASSYMTDY
YLSTVFQALDSQDNYLRVQDNALTGTTTAWDDASMANMLLLEQVGENLLKKQVSNDETYE
QALTRFAEKLSAQKKLRENKASY*

Transcript Sequence

Transcript ID

Solyc08g006860.3.1
Transcript Infomation

Patatin (AHRD V3.3 *** K4CIH4_SOLLC)
Sequence

AAACACTTTTGAAGATATTAATTATAATTTGCAAAATGGCAACTACTAAATCTTTTTTAA
TTTTAATTTTTATGATATTAGCAACTACTAGTTCAACATTTGCTACAGAAGAAATGGTGA
CTGTTCTTAGTATTGATGGAGGTGCAATAAGGGGAATCATTCCAGGTGTCATTCTTAGAT
ATCTCGAAGCAGAACTTCAGAGAATTGACAATAATACAGATGCAAGAGTGGCTGATTACT
TTGATCTAATTGGAGGAACAAGTACTGGAGGATTAGTGACTGCTATGTTAACTACTCCAA
ATGAAAACAATAGACCCTTTGCTGCTGCCAATGAAATAGTACCTTTTTACTTCGAACATG
GCCCAAAGATTTTTGAACCTAGTGGTAATCCACTTTTTGGCCCACAATATAATGGAACAT
ATCTTATGCAAGTTATTCAAGAAAAAGTTGGAGAAACTTTTTTGAATCAAACTTTGACAG
AAGTTGTCATCTCAAGCTTTGACATCCAAACAAATAAGCCAGTAATATTCACTAAGTCAA
GTTTAGCGAAATCTCCAGAATTGAACGCTAAGATGTATGACATATGTTATTCCACAGCAG
CAGCTCCAACATATTTTGCTCCACTTGGATTTAATACTAGTCATAATGGAGATCAATATA
GGTTCAATCTTGTTGATGGTGGTGTTGCTACTGTTGGTGATCCGGCGTTATTATCAGTTA
GCGTTGCTACGAAACTTGCAGAAGAGGATCCAGCATTTTCTTCAATTAGGTCATTGAATT
TCAAAAGAATGTTGTTGCTCTCATTAGGCACTGGCACTACATCAGATTTTGATAAAACAT
ATACAGCAGAACAGGCAGCTACATGGGGTATTTTACAATGGGGATCAGCTATACAAGCAA
TGACTGGTGCAGCAAGTTCGTACATGACTGATTATTATCTTTCTACTGTTTTTCAAGCTC
TTGATTCACAAGACAATTACCTCAGGGTCCAAGACAATGCATTAACAGGCACAACTACTG
CATGGGATGATGCTTCTATGGCTAATATGCTATTATTAGAACAAGTTGGTGAAAACTTAC
TGAAGAAACAAGTTTCCAATGATGAAACCTATGAGCAAGCTCTGACTAGGTTTGCAGAAA
AGCTCTCTGCTCAGAAGAAACTTCGAGAAAACAAAGCGTCTTATTAGTTCAAAGGTCTTA
TTATTACTATGCTTAAATAAATAATAAGTGCTTGCAAAGTTTACGTGGGATAAATTTCAA
TAGAAATGTCTCTCTATGTAATGGATTATGTAACCTTTTGGTTGTGTTAGATGTTCGAAT
AAATTATCGCGATTTTGTGTTATGGTATTTGAATCTTTTTTTCGAAGCAAAAAGAAAAAA
AATATATA