Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc08g006460.3.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2)
Sequence

ATGGATGAATATTCAAGCAAAAGAGCTGTTAATGGCCTTTACGTTCCCAGAAGAGGTTTG
AGGGACATAGCTGACAGCAGGGATGAAAATGTTCAGTTGTGCTCTCGATATGGATGCAGC
AGCCGGCTCAGCTCTATGAAGAGCCCGCAAGTTAGAAGTACAGAGAAACCAAGACCTCTC
AGGCCTTCTTTCACTTCCTCAAATGGAAAAGAAGTTGTTGGAAGTTCATGTAGGACATCC
TCTGTGATGGCTAATGCGAGAAAATCATTCAAGGACAGGAAAGCATATTCTCATGTTGGA
AATGATCAATCAGAAACGTCTTGTTCACATGGTGAACCTGAAGCTTCGGAAGCTTCGGAA
CACATGAAGTTATCAAAAGTGCATCAACCCCAATTCAATTCAGTAATTCGAGATACCGGA
TCAAGTAAAATTACATTGAAAGAAGTAGGTTGCTCTAGTGGAGCTTCAAGCAGTAAACCT
CGTAGATTATTTACTCCCAAGTATTCCAATCAAAATAGTCCAGTAGGTTCGTCTGTTTCT
TCGTCATCTAAGGCCATTGGTGCAGGAACAAGAGGCACCGCTAGTGGGGCTGGATATATG
CCGAGAAATCTAAAATGCAACTCACGATCAGATATCTCTCCACAGAGTTGTTCGACAGCA
GATTCAAGATTTAGTAGAAGGGACATGGTGAAAAGAAGAAATGCAGAAGGTGAAAGCACT
TCATCCTCTAAAGGGAAGAAAATAAGTGGAGCATTACCAAAAGAAGGAGATGTCATTCGT
CCAACTCGTGGTATCTCAATTTCTGATTCAAGGAATAGTAAAAGCTTTGATAATAGGGAG
GATAGTCGTGCTCTATCAGTTAGGACTCGCAAGTCAATGAATGTGCCTAGGCTTAGAGAT
TCAGTACGAGATTCATCATCTGGATTTTTCCAGAATTCACCTCAGCTTGAATCTCCAAAT
TTCAGTCTGCAGTCATCAAGTCAATTTTTCTCAGATGCTTCTTCGAGTGATTCAAGTGCT
TTTAGTTTTCCTGGAAATGATGTTGAAGATCTCCCAGCTGGAGCGTCTGGAACTTCTGCA
CAACTAGGTATAAACCAACTAATGAACCGTGATGTCTTGCAGCGATATAACATGGATGGA
GTTGCTCAGGTATTAGTGGCACTTGAAAGAATGGAACAAGATGAAGAATTAACATATGAG
CAACTACTTGTGTTGGAGACCAACTTGTTTCTTGGTGGCCTCAACTCCTACGACCAGCAT
AGAGGAATGAGGCTGGATATAGACAATATGTCCTATGAGGAATTATTAGCTCTCGAGGAG
AGAATGGGGAGTGTTAGCACAGCTCTGTCCGAGGAGGCATTGTCAAAGTGCATCCGGAAA
AGCATTTATCAGTCTATGCCTTCAGAAATAGGGGAATTTGGAAGCGGCGAGAATGAAGAT
GAGGTCAAATGCTCTATTTGTCAGGAGGAGTATGTGATTGGAGATGAAATAGGAAGGTTG
GAATGTGATCATGGGTATCATATGGAGTGTGTAAAACATTGGTTGAGTCTCAAGAATTGG
TGTCCTATATGTAAAGCTTCAGCAGCTCCATCTTAG

Peptide Sequence

PEP ID

Solyc08g006460.3.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2)
Sequence

MDEYSSKRAVNGLYVPRRGLRDIADSRDENVQLCSRYGCSSRLSSMKSPQVRSTEKPRPL
RPSFTSSNGKEVVGSSCRTSSVMANARKSFKDRKAYSHVGNDQSETSCSHGEPEASEASE
HMKLSKVHQPQFNSVIRDTGSSKITLKEVGCSSGASSSKPRRLFTPKYSNQNSPVGSSVS
SSSKAIGAGTRGTASGAGYMPRNLKCNSRSDISPQSCSTADSRFSRRDMVKRRNAEGEST
SSSKGKKISGALPKEGDVIRPTRGISISDSRNSKSFDNREDSRALSVRTRKSMNVPRLRD
SVRDSSSGFFQNSPQLESPNFSLQSSSQFFSDASSSDSSAFSFPGNDVEDLPAGASGTSA
QLGINQLMNRDVLQRYNMDGVAQVLVALERMEQDEELTYEQLLVLETNLFLGGLNSYDQH
RGMRLDIDNMSYEELLALEERMGSVSTALSEEALSKCIRKSIYQSMPSEIGEFGSGENED
EVKCSICQEEYVIGDEIGRLECDHGYHMECVKHWLSLKNWCPICKASAAPS*

Transcript Sequence

Transcript ID

Solyc08g006460.3.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2)
Sequence

TTGGTAGGACGGCATTTCAGTATTTATCTGTTTTGAGAATTAATTTCTCTTTCTCCAAAT
CTCCACCACCTTCCCATCTTTACATAATTTACACGTTTCTCTCTCTCCCCTTATCTCTCT
CTCTCTACTAAAAAGACTTACTTTTTTTCCTCATTTGTTTCTTTGTATTTTCTTTTTCCT
TTTGTGTAAAGAAGAAGAGAAGAACAAGAACAAGGAAGAGGAACAAATAAAAACTAAGAG
GTTGTATGTAATCTATGGATGAATATTCAAGCAAAAGAGCTGTTAATGGCCTTTACGTTC
CCAGAAGAGGTTTGAGGGACATAGCTGACAGCAGGGATGAAAATGTTCAGTTGTGCTCTC
GATATGGATGCAGCAGCCGGCTCAGCTCTATGAAGAGCCCGCAAGTTAGAAGTACAGAGA
AACCAAGACCTCTCAGGCCTTCTTTCACTTCCTCAAATGGAAAAGAAGTTGTTGGAAGTT
CATGTAGGACATCCTCTGTGATGGCTAATGCGAGAAAATCATTCAAGGACAGGAAAGCAT
ATTCTCATGTTGGAAATGATCAATCAGAAACGTCTTGTTCACATGGTGAACCTGAAGCTT
CGGAAGCTTCGGAACACATGAAGTTATCAAAAGTGCATCAACCCCAATTCAATTCAGTAA
TTCGAGATACCGGATCAAGTAAAATTACATTGAAAGAAGTAGGTTGCTCTAGTGGAGCTT
CAAGCAGTAAACCTCGTAGATTATTTACTCCCAAGTATTCCAATCAAAATAGTCCAGTAG
GTTCGTCTGTTTCTTCGTCATCTAAGGCCATTGGTGCAGGAACAAGAGGCACCGCTAGTG
GGGCTGGATATATGCCGAGAAATCTAAAATGCAACTCACGATCAGATATCTCTCCACAGA
GTTGTTCGACAGCAGATTCAAGATTTAGTAGAAGGGACATGGTGAAAAGAAGAAATGCAG
AAGGTGAAAGCACTTCATCCTCTAAAGGGAAGAAAATAAGTGGAGCATTACCAAAAGAAG
GAGATGTCATTCGTCCAACTCGTGGTATCTCAATTTCTGATTCAAGGAATAGTAAAAGCT
TTGATAATAGGGAGGATAGTCGTGCTCTATCAGTTAGGACTCGCAAGTCAATGAATGTGC
CTAGGCTTAGAGATTCAGTACGAGATTCATCATCTGGATTTTTCCAGAATTCACCTCAGC
TTGAATCTCCAAATTTCAGTCTGCAGTCATCAAGTCAATTTTTCTCAGATGCTTCTTCGA
GTGATTCAAGTGCTTTTAGTTTTCCTGGAAATGATGTTGAAGATCTCCCAGCTGGAGCGT
CTGGAACTTCTGCACAACTAGGTATAAACCAACTAATGAACCGTGATGTCTTGCAGCGAT
ATAACATGGATGGAGTTGCTCAGGTATTAGTGGCACTTGAAAGAATGGAACAAGATGAAG
AATTAACATATGAGCAACTACTTGTGTTGGAGACCAACTTGTTTCTTGGTGGCCTCAACT
CCTACGACCAGCATAGAGGAATGAGGCTGGATATAGACAATATGTCCTATGAGGAATTAT
TAGCTCTCGAGGAGAGAATGGGGAGTGTTAGCACAGCTCTGTCCGAGGAGGCATTGTCAA
AGTGCATCCGGAAAAGCATTTATCAGTCTATGCCTTCAGAAATAGGGGAATTTGGAAGCG
GCGAGAATGAAGATGAGGTCAAATGCTCTATTTGTCAGGAGGAGTATGTGATTGGAGATG
AAATAGGAAGGTTGGAATGTGATCATGGGTATCATATGGAGTGTGTAAAACATTGGTTGA
GTCTCAAGAATTGGTGTCCTATATGTAAAGCTTCAGCAGCTCCATCTTAG