Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g065980.3.1
CDS Infomation

alkaline alpha-galactosidase seed imbibition protein
Sequence

ATGACAGTAGGAGCAGGAATTTGTGTGGCTGAAAGAAAGCTTAATGTATTGGGGCAAAGC
ATTCTAAGTGATGTTGATGAAAATATTATTGTTACTCAGCCAAATGGTAAAGCTTTTACT
AATGGGGCATTTCTTGGTGTTAATTCAGACAGAATTGGTAGTCATAGAGTCTTCCCTATT
GGCAAACTACAAGGATTGAGATTTATGTGTGGTTTCCGGTTCAAGTTATGGTGGATGACA
CAGAGAATGGGTACATCTGGCCAAGATATACCATTCGAGACTCAGTTTTTGATTGTAGAA
GGAAATGATGGTTCAAATTTTGATCAAGACAACCAGCAAAATTCAGCATTGTATGTTGTT
TTCTTGCCTATTCTAGAAGGTGATTTTAGGGCCGTTCTTCAAGGGAATTCAAACGATGAG
TTAGAGATATGTTTGGAAAGTGGAGATCCTGCTGTGCAAGATTTCGAGGGAAGCCATTTG
GTTTACGTAGCAGCTGGACCAGACCCTTTTGATGTCATCACTAATGCTGTCAAGACGGTG
GAGAGGCATTTACAGACATTTTGTCACCGTGATAGAAAGAAGATGCCAGACATGTTGAAC
TGGTTCGGATGGTGCACGTGGGATGCTTTCTATACTACCGTTACTTCAGAGGGAGTGAAG
CAAGGGTTAGAGAGTTTGGAGAAAGGAGGTATTCCCCCAAAGTTTGTACTCATTGATGAT
GGATGGCAATCAGTGAGTATGGATCCCGATGGTATCGAATCCATTGCTGATAACCATGCA
AACTTTGCTAACAGGTTAACTCATATCAAAGAGAACCATAAGTTTCAGAAAAATGGAAAA
GAAGGTCATAGGGTTAACGATCCTGCAATGGGACTTCGACATGTTGTTACCAATATCAAA
GACCAACACAATTTGAAGTATGTGTACATGTGGCATGCACTTGCTGGTTACTGGGGCGGT
GTGAGACCCGGGGTCCCTGGGATGGAACACTATGAATCCAAGTTATCTTTCCCAGTTTCA
TCTCCCGGGACTGAGTCACAGGAACCTGATGATGCTTTGAGCAGCTTGATAAAGAACGGT
CTTGGTCTAGTGAACCCTGAGAAAGTTTTATACTTCTATAATGAACTGCACTCATACCTT
GCTTCTGCGGGTATAGATGGGGTTAAAGTAGATGTTCAGAACATCCTTGAAACACTTGGA
GCTGGTCATGGTGGAAGGGTAAAACTCGCAAGGAAGTATCATCAAGCATTAGAGGCATCT
ATTGCTCGAAATTTTCCTGATAATGGAATTATTTCATGCATGAGCCATAGTAATGATAGT
TTGTTCAGTGCAAAGCGTTCAGCTGTAATTAGAGCATCGGATGATTTCTGGCCACGAGAC
CCTGCATCACACACAATTCACATAGCATCAGTGGCGTACAACACCATTTTCCTTGGTGAA
TTCATGCAGCCTGATTGGGATATGTTTCACAGTGTGCATCCCATGGCTGAATACCACGGA
GCTGCACGAGCTGTTGGAGGCTGTGCTATTTACGTTAGTGACAAGCCTGGACAGCACGAC
TTTAATCTTCTGAAGAAGCTTGTACTTCCAGATGGTTCCATATTACGCGCCAAACTTCCA
GGAAGGCCAACTAGAGACTGCTTGTTTTCTGATCCAGCAAGAGACGGGATAAGTCTTTTA
AAAATCTGGAATCTCAACGATTTCAATGGAGTAGTCGGTGTATTCAACTGTCAAGGTGCT
GGATGGTGTAAGGTTGGCAAGAAGAATCTAATCCACGATTGTCAACCAGGGACAATAACT
GGGATTGTTCGTGCTAATGATGTCAATTACTTACCAAGGATTGCTCATGATGGATGGACC
GGCGATGCCATTCTGTATTCTCATCTTCATAGGGAATTGATCAATCTTCCTAAAAATACT
TCGATTCCAATCACTCTAAACGCGAGAGAATATGAAGTCTTTACAGTTGTTCCAATCAAT
GAAATGTCTACAGGATCAAGATTTGCTCCGATTGGTCTTGTGAATATGTTCAATTCAGGA
GGAGCAATCAAAGAGGTGAAATATGAAACAGAGGGAAAATGTGGACTAGTTTCCATGAAG
GTTCGCGGATGTGGAACGTTTGGAGCTTATTCATCTGGGAAGCCTAAACGAATTCATGTT
GACAACGAAGAAGTACAGTTTGATTACGACGAATCCTCTGGATTGTTCACCATTAACATT
ACAGTTCCTGATCAAGAATTATACCTTTGGGATGTTAAAGTTGAAACGTGA

Peptide Sequence

PEP ID

Solyc07g065980.3.1
PEP Infomation

alkaline alpha-galactosidase seed imbibition protein
Sequence

MTVGAGICVAERKLNVLGQSILSDVDENIIVTQPNGKAFTNGAFLGVNSDRIGSHRVFPI
GKLQGLRFMCGFRFKLWWMTQRMGTSGQDIPFETQFLIVEGNDGSNFDQDNQQNSALYVV
FLPILEGDFRAVLQGNSNDELEICLESGDPAVQDFEGSHLVYVAAGPDPFDVITNAVKTV
ERHLQTFCHRDRKKMPDMLNWFGWCTWDAFYTTVTSEGVKQGLESLEKGGIPPKFVLIDD
GWQSVSMDPDGIESIADNHANFANRLTHIKENHKFQKNGKEGHRVNDPAMGLRHVVTNIK
DQHNLKYVYMWHALAGYWGGVRPGVPGMEHYESKLSFPVSSPGTESQEPDDALSSLIKNG
LGLVNPEKVLYFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEAS
IARNFPDNGIISCMSHSNDSLFSAKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGE
FMQPDWDMFHSVHPMAEYHGAARAVGGCAIYVSDKPGQHDFNLLKKLVLPDGSILRAKLP
GRPTRDCLFSDPARDGISLLKIWNLNDFNGVVGVFNCQGAGWCKVGKKNLIHDCQPGTIT
GIVRANDVNYLPRIAHDGWTGDAILYSHLHRELINLPKNTSIPITLNAREYEVFTVVPIN
EMSTGSRFAPIGLVNMFNSGGAIKEVKYETEGKCGLVSMKVRGCGTFGAYSSGKPKRIHV
DNEEVQFDYDESSGLFTINITVPDQELYLWDVKVET*

Transcript Sequence

Transcript ID

Solyc07g065980.3.1
Transcript Infomation

alkaline alpha-galactosidase seed imbibition protein
Sequence

GTATAAAACGCATAAAATCCGGCCATTATATTAACCTCCCAAGCTTTTCTTTTCTCAGCT
CTCAAAATTTAATTGCTATACAAGTTTTGATTTTGTCATTGTATATTCCTTGTGTTTTTT
TTTTTTTGGTTTTAGAAAAGATAAAGATAATATTTTTTTTTTCATTTGGGTGTTTTCTTG
TTTATTTGGTTATAGAAAGAAAAAAGATGACAGTAGGAGCAGGAATTTGTGTGGCTGAAA
GAAAGCTTAATGTATTGGGGCAAAGCATTCTAAGTGATGTTGATGAAAATATTATTGTTA
CTCAGCCAAATGGTAAAGCTTTTACTAATGGGGCATTTCTTGGTGTTAATTCAGACAGAA
TTGGTAGTCATAGAGTCTTCCCTATTGGCAAACTACAAGGATTGAGATTTATGTGTGGTT
TCCGGTTCAAGTTATGGTGGATGACACAGAGAATGGGTACATCTGGCCAAGATATACCAT
TCGAGACTCAGTTTTTGATTGTAGAAGGAAATGATGGTTCAAATTTTGATCAAGACAACC
AGCAAAATTCAGCATTGTATGTTGTTTTCTTGCCTATTCTAGAAGGTGATTTTAGGGCCG
TTCTTCAAGGGAATTCAAACGATGAGTTAGAGATATGTTTGGAAAGTGGAGATCCTGCTG
TGCAAGATTTCGAGGGAAGCCATTTGGTTTACGTAGCAGCTGGACCAGACCCTTTTGATG
TCATCACTAATGCTGTCAAGACGGTGGAGAGGCATTTACAGACATTTTGTCACCGTGATA
GAAAGAAGATGCCAGACATGTTGAACTGGTTCGGATGGTGCACGTGGGATGCTTTCTATA
CTACCGTTACTTCAGAGGGAGTGAAGCAAGGGTTAGAGAGTTTGGAGAAAGGAGGTATTC
CCCCAAAGTTTGTACTCATTGATGATGGATGGCAATCAGTGAGTATGGATCCCGATGGTA
TCGAATCCATTGCTGATAACCATGCAAACTTTGCTAACAGGTTAACTCATATCAAAGAGA
ACCATAAGTTTCAGAAAAATGGAAAAGAAGGTCATAGGGTTAACGATCCTGCAATGGGAC
TTCGACATGTTGTTACCAATATCAAAGACCAACACAATTTGAAGTATGTGTACATGTGGC
ATGCACTTGCTGGTTACTGGGGCGGTGTGAGACCCGGGGTCCCTGGGATGGAACACTATG
AATCCAAGTTATCTTTCCCAGTTTCATCTCCCGGGACTGAGTCACAGGAACCTGATGATG
CTTTGAGCAGCTTGATAAAGAACGGTCTTGGTCTAGTGAACCCTGAGAAAGTTTTATACT
TCTATAATGAACTGCACTCATACCTTGCTTCTGCGGGTATAGATGGGGTTAAAGTAGATG
TTCAGAACATCCTTGAAACACTTGGAGCTGGTCATGGTGGAAGGGTAAAACTCGCAAGGA
AGTATCATCAAGCATTAGAGGCATCTATTGCTCGAAATTTTCCTGATAATGGAATTATTT
CATGCATGAGCCATAGTAATGATAGTTTGTTCAGTGCAAAGCGTTCAGCTGTAATTAGAG
CATCGGATGATTTCTGGCCACGAGACCCTGCATCACACACAATTCACATAGCATCAGTGG
CGTACAACACCATTTTCCTTGGTGAATTCATGCAGCCTGATTGGGATATGTTTCACAGTG
TGCATCCCATGGCTGAATACCACGGAGCTGCACGAGCTGTTGGAGGCTGTGCTATTTACG
TTAGTGACAAGCCTGGACAGCACGACTTTAATCTTCTGAAGAAGCTTGTACTTCCAGATG
GTTCCATATTACGCGCCAAACTTCCAGGAAGGCCAACTAGAGACTGCTTGTTTTCTGATC
CAGCAAGAGACGGGATAAGTCTTTTAAAAATCTGGAATCTCAACGATTTCAATGGAGTAG
TCGGTGTATTCAACTGTCAAGGTGCTGGATGGTGTAAGGTTGGCAAGAAGAATCTAATCC
ACGATTGTCAACCAGGGACAATAACTGGGATTGTTCGTGCTAATGATGTCAATTACTTAC
CAAGGATTGCTCATGATGGATGGACCGGCGATGCCATTCTGTATTCTCATCTTCATAGGG
AATTGATCAATCTTCCTAAAAATACTTCGATTCCAATCACTCTAAACGCGAGAGAATATG
AAGTCTTTACAGTTGTTCCAATCAATGAAATGTCTACAGGATCAAGATTTGCTCCGATTG
GTCTTGTGAATATGTTCAATTCAGGAGGAGCAATCAAAGAGGTGAAATATGAAACAGAGG
GAAAATGTGGACTAGTTTCCATGAAGGTTCGCGGATGTGGAACGTTTGGAGCTTATTCAT
CTGGGAAGCCTAAACGAATTCATGTTGACAACGAAGAAGTACAGTTTGATTACGACGAAT
CCTCTGGATTGTTCACCATTAACATTACAGTTCCTGATCAAGAATTATACCTTTGGGATG
TTAAAGTTGAAACGTGA