Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g064900.3.1
CDS Infomation

extracellular ligand-gated ion channel protein (DUF3537) (AHRD V3.3 *** AT3G20300.1)
Sequence

ATGGGGGATGAAAGTAAAGGCGAAAGCCAAAGCCAATCTTTACTGAACAAGAAGAGTATA
TTATATGCACGTAGTAAATCACATGCTTACGATGAATTGCGTGTATTTAGGAGATGGTTG
AAGTGGATGTGTGTGGATCAATCTGATACATTATCTACTGTTTTGTCTTGGTTTGTTTTT
ATAATATTTGTAATTGTTGTTCCATGTTTGTCCCATTTCTTATTGGCTTGTGCAGATTGT
GATGCTAATCATGATAGACCTTATGATAATGTTGTTCAGTTGTCTCTTAGTGGTGTTGCT
GCTCTCTCTTTTATTTGTCTTACTGGATTTGTGAAGAAATTTGGGCTTCGTAGGTTCTTG
TTTCTTGATAAGCTTTGTGATGAAAGTGAGACTGTAAGGAAATGCTATATGGAAGAGCTC
AATAGATCATTGAAGATCCTATTCATTTTTGTCCTGCCATGTTTCGCTGCTGAAAGCATA
TATAAGATTTGGTGGTACAGTTCAGGTGGAACTCAAATCCCCTTTTTAGGCAATGTCATT
GTGAGTGATGTTGTCGCGTGCCTTCTAGAGCTGAGCTCATGGCTTTACAGAACGACCGTG
TTTTTCCTAGTGTGTGTCCTGTTTCGCTTGATTTGTTACCTTCAGATTCTCCGATTGAGA
GATTTTGCTCAAATCTTCCATATTGATTCTGATGTTGAGACAGTGTTGAGAGAGCACCTT
AGAATCAGGAGGCACTTGCGGATCATTAGCCATAGGTACCGTATATTTATCTTGTTGGCA
TTGATATTTGTCACAGCAAGTCAATTTGCGTCCCTTCTCATGACTACGCGATCAACTGCT
GATCTTCATATCTACAAGAGTGGTGAACTCGCGCTATGCTCTCTGAGTCTACTTGCTGGG
CTGTTGATACTGTTGAGAAGTGCAGTCAGAATAACCCATAAGGCACAAGCTGTTACATGC
TTGGCGGCTAAGTGGCACGTGTGTGCAACAATAGACTCTTTTGAAGCAGTTGAGGGTGAA
ACTCCTCCAATTTCTCAAATAACCAGCAACCAAGTTTTCCCTGTGACTTCCGAAGGGTCG
TCTGATGCTGATGATGTTGGAGATGAGGAAGATGAGCTCGACAACACGAAATTCGTCCAC
TCATATGCATATAGCACAATTTCATTCCAGAAAAGGCAGGCACTAGTGACATATTTTGAG
CATAACAGAGCAGGAATCACTCTATATGGCTTTATGCTGGATAGATCATATCTTCACACT
ATTTTTGGTATGGAACTAGCTCTGGTCCTCTGGTTGCTTGGAAAAACTATTGCTTCTATT
GCTTGA

Peptide Sequence

PEP ID

Solyc07g064900.3.1
PEP Infomation

extracellular ligand-gated ion channel protein (DUF3537) (AHRD V3.3 *** AT3G20300.1)
Sequence

MGDESKGESQSQSLLNKKSILYARSKSHAYDELRVFRRWLKWMCVDQSDTLSTVLSWFVF
IIFVIVVPCLSHFLLACADCDANHDRPYDNVVQLSLSGVAALSFICLTGFVKKFGLRRFL
FLDKLCDESETVRKCYMEELNRSLKILFIFVLPCFAAESIYKIWWYSSGGTQIPFLGNVI
VSDVVACLLELSSWLYRTTVFFLVCVLFRLICYLQILRLRDFAQIFHIDSDVETVLREHL
RIRRHLRIISHRYRIFILLALIFVTASQFASLLMTTRSTADLHIYKSGELALCSLSLLAG
LLILLRSAVRITHKAQAVTCLAAKWHVCATIDSFEAVEGETPPISQITSNQVFPVTSEGS
SDADDVGDEEDELDNTKFVHSYAYSTISFQKRQALVTYFEHNRAGITLYGFMLDRSYLHT
IFGMELALVLWLLGKTIASIA*

Transcript Sequence

Transcript ID

Solyc07g064900.3.1
Transcript Infomation

extracellular ligand-gated ion channel protein (DUF3537) (AHRD V3.3 *** AT3G20300.1)
Sequence

ATTAAACCTCACAAGACCCACAAATCCCGGTACTCTACAATAATATCTCTCCAATTTCAT
CAAACAAAAAATAAATTTTCTGCAATTTCATCAAACACCCACAAAAAAACAAAAAAAAAA
TTAAACTTTTTCCATTTTTATCGAACACCCAGAAAAAAAGATTGAAACTTTTTCCATTTT
TCATCAAATACCCAGAAAAACGATTTAAACTTTCTACAGTTTCATCAAAAACCCAGAAAA
AAATTTGATTTTTTTCAATGGGGGATGAAAGTAAAGGCGAAAGCCAAAGCCAATCTTTAC
TGAACAAGAAGAGTATATTATATGCACGTAGTAAATCACATGCTTACGATGAATTGCGTG
TATTTAGGAGATGGTTGAAGTGGATGTGTGTGGATCAATCTGATACATTATCTACTGTTT
TGTCTTGGTTTGTTTTTATAATATTTGTAATTGTTGTTCCATGTTTGTCCCATTTCTTAT
TGGCTTGTGCAGATTGTGATGCTAATCATGATAGACCTTATGATAATGTTGTTCAGTTGT
CTCTTAGTGGTGTTGCTGCTCTCTCTTTTATTTGTCTTACTGGATTTGTGAAGAAATTTG
GGCTTCGTAGGTTCTTGTTTCTTGATAAGCTTTGTGATGAAAGTGAGACTGTAAGGAAAT
GCTATATGGAAGAGCTCAATAGATCATTGAAGATCCTATTCATTTTTGTCCTGCCATGTT
TCGCTGCTGAAAGCATATATAAGATTTGGTGGTACAGTTCAGGTGGAACTCAAATCCCCT
TTTTAGGCAATGTCATTGTGAGTGATGTTGTCGCGTGCCTTCTAGAGCTGAGCTCATGGC
TTTACAGAACGACCGTGTTTTTCCTAGTGTGTGTCCTGTTTCGCTTGATTTGTTACCTTC
AGATTCTCCGATTGAGAGATTTTGCTCAAATCTTCCATATTGATTCTGATGTTGAGACAG
TGTTGAGAGAGCACCTTAGAATCAGGAGGCACTTGCGGATCATTAGCCATAGGTACCGTA
TATTTATCTTGTTGGCATTGATATTTGTCACAGCAAGTCAATTTGCGTCCCTTCTCATGA
CTACGCGATCAACTGCTGATCTTCATATCTACAAGAGTGGTGAACTCGCGCTATGCTCTC
TGAGTCTACTTGCTGGGCTGTTGATACTGTTGAGAAGTGCAGTCAGAATAACCCATAAGG
CACAAGCTGTTACATGCTTGGCGGCTAAGTGGCACGTGTGTGCAACAATAGACTCTTTTG
AAGCAGTTGAGGGTGAAACTCCTCCAATTTCTCAAATAACCAGCAACCAAGTTTTCCCTG
TGACTTCCGAAGGGTCGTCTGATGCTGATGATGTTGGAGATGAGGAAGATGAGCTCGACA
ACACGAAATTCGTCCACTCATATGCATATAGCACAATTTCATTCCAGAAAAGGCAGGCAC
TAGTGACATATTTTGAGCATAACAGAGCAGGAATCACTCTATATGGCTTTATGCTGGATA
GATCATATCTTCACACTATTTTTGGTATGGAACTAGCTCTGGTCCTCTGGTTGCTTGGAA
AAACTATTGCTTCTATTGCTTGAATCATTGGGTATTGATCATTGTTACGT