Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g062300.3.1
CDS Infomation

NHL repeat-containing protein (AHRD V3.3 *** A0A118K6E2_CYNCS)
Sequence

ATGAGGAATTCCTTTTTATTTTTCAGTTTGATAGCTTTTTTTATTGCTTATCTTCAATTT
CAGGTTCATGCTGCTGCTCCTGCTGGGCCATTGATTAAGCACTTGAATTCTATACTCAAA
TGGTCTAGGTCTACCTCTAAAACTCCTCAATCAGATGGAAATTTTCTTCAATTCGAAGAA
GGTTACTTAGTTGAGACTGTTGTAGAAGGAAATGAACTTGGTGTTGTGCCATATAAAATC
CGTGTCTCAGAGGATGGTGAACTTTTTGCTGTTGATGCTATTAATAGCAAAATCGTTAGA
ATTACTCCCCCGTTATCTCAATATAGTAGAGCAAGATTAGTTGCTGGTTCATTTCAAGGT
CACACTGGCCATGTGGACGGGAAGCCAAGTGATGCCCGTTTCAAAAATCCAAAAGGAGCT
ACCATGGACGACAAAGGAAACATTTATGTTGCTGATACCTCAAATCTGGCTATTAGGAAG
ATTGGAGAAGCAGGTGTGACAACAATTGCTGGAGGAAAGTCTAATGTTCCGGGATACAGG
GATGGGCCAAGTGAAGATGCACAATTTTCAAGCGACTTCGATGTTATATATGTCCGTCCA
ACTTGTTCATTACTCGTTGTTGATCGAGGAAATGCTGCTCTTCGGCAAATTTCTCTCAGT
CAGGAGGACTGTGACTACCAATACAGCTCAGTGTCAACCATAGATGTTCTCATGGTTATT
GGTGCTATTATAATAGGATACGCTGCATGCATGCTCCAGCAAGGATTTGGCTCAAAGACG
CAAGTACGTGTGGAAGTGGAGCAAGAGGAACCTTCTTTATTAAAGGAGAAGCCGACCCCA
GTTGTTGAAACTGTGAAAGATGAACAAGAAGCAGGTTGGCCATCATTTGGACAGCTACTC
TGGGATTTGGCCAAGCTTGCAATAGAGGGTCTGGGTTCCCTTTTTGGCTATGCCGTTCCT
CTGCGGTATAGACCCAAGAGCTTCATTAGACCCGGACTAACTCCATTGAAAGATTCACTG
ATCATGCCTGAAGATGAAGTTGAGCCCCCATTAGTTCAAAAGCAGAGGGCTCCACCACCC
GCTTCCGAGATCAGACATGTCCCAGCTGTCGGTGATAAAGTAGTACCCGAGGGCAAGCCC
ACCAAGATTAGATCGAGTAGCTCAAAAGACCCTAACTTGTCAACGAAGCACAGGTCTTCC
AGACGACATGAGTATGCAGAATACTATGGAGCATCAGGCGAGGTTCCTTCATACGTGCAC
GTGAGGTCTAAAAGTCAGAAGGAAAGAACCAAGCATCGGCGACATGATTCAAGTGTTGGA
GCAGCAGGAGTAGAGACAAAACCTGCTGATCAACCGAAAGCAGTAAACTATGAGGATCCA
AAGTTTGCCCATTACAGCATGAGAAACAAGTATGGAGACTCTTTCCCCCGGTACGCATGA

Peptide Sequence

PEP ID

Solyc07g062300.3.1
PEP Infomation

NHL repeat-containing protein (AHRD V3.3 *** A0A118K6E2_CYNCS)
Sequence

MRNSFLFFSLIAFFIAYLQFQVHAAAPAGPLIKHLNSILKWSRSTSKTPQSDGNFLQFEE
GYLVETVVEGNELGVVPYKIRVSEDGELFAVDAINSKIVRITPPLSQYSRARLVAGSFQG
HTGHVDGKPSDARFKNPKGATMDDKGNIYVADTSNLAIRKIGEAGVTTIAGGKSNVPGYR
DGPSEDAQFSSDFDVIYVRPTCSLLVVDRGNAALRQISLSQEDCDYQYSSVSTIDVLMVI
GAIIIGYAACMLQQGFGSKTQVRVEVEQEEPSLLKEKPTPVVETVKDEQEAGWPSFGQLL
WDLAKLAIEGLGSLFGYAVPLRYRPKSFIRPGLTPLKDSLIMPEDEVEPPLVQKQRAPPP
ASEIRHVPAVGDKVVPEGKPTKIRSSSSKDPNLSTKHRSSRRHEYAEYYGASGEVPSYVH
VRSKSQKERTKHRRHDSSVGAAGVETKPADQPKAVNYEDPKFAHYSMRNKYGDSFPRYA*

Transcript Sequence

Transcript ID

Solyc07g062300.3.1
Transcript Infomation

NHL repeat-containing protein (AHRD V3.3 *** A0A118K6E2_CYNCS)
Sequence

CTCATTCGTCATAATTCCCCCAAAAAATTGTTCAAAAGCTTCAAAGTACTACTTACAACT
GAAACAGTACTGAACTTAGCTTAAGCTTTTTTTTTATATATATTTTTTTTTCGCTTAGCA
GAATCAATGTGATTTTTTTCTTCTTCTGTAACTTACAGCATTTAGCTTTACTTTCTTCTG
CATTTTCAGAGATCCATAAAAAAAAAAATTCACTGTTTATTCTGATTTTTGTGCTCTTTT
TGGGATTTTTTTTGTACTGGGGAGAAATAGCTATGAGGAATTCCTTTTTATTTTTCAGTT
TGATAGCTTTTTTTATTGCTTATCTTCAATTTCAGGTTCATGCTGCTGCTCCTGCTGGGC
CATTGATTAAGCACTTGAATTCTATACTCAAATGGTCTAGGTCTACCTCTAAAACTCCTC
AATCAGATGGAAATTTTCTTCAATTCGAAGAAGGTTACTTAGTTGAGACTGTTGTAGAAG
GAAATGAACTTGGTGTTGTGCCATATAAAATCCGTGTCTCAGAGGATGGTGAACTTTTTG
CTGTTGATGCTATTAATAGCAAAATCGTTAGAATTACTCCCCCGTTATCTCAATATAGTA
GAGCAAGATTAGTTGCTGGTTCATTTCAAGGTCACACTGGCCATGTGGACGGGAAGCCAA
GTGATGCCCGTTTCAAAAATCCAAAAGGAGCTACCATGGACGACAAAGGAAACATTTATG
TTGCTGATACCTCAAATCTGGCTATTAGGAAGATTGGAGAAGCAGGTGTGACAACAATTG
CTGGAGGAAAGTCTAATGTTCCGGGATACAGGGATGGGCCAAGTGAAGATGCACAATTTT
CAAGCGACTTCGATGTTATATATGTCCGTCCAACTTGTTCATTACTCGTTGTTGATCGAG
GAAATGCTGCTCTTCGGCAAATTTCTCTCAGTCAGGAGGACTGTGACTACCAATACAGCT
CAGTGTCAACCATAGATGTTCTCATGGTTATTGGTGCTATTATAATAGGATACGCTGCAT
GCATGCTCCAGCAAGGATTTGGCTCAAAGACGCAAGTACGTGTGGAAGTGGAGCAAGAGG
AACCTTCTTTATTAAAGGAGAAGCCGACCCCAGTTGTTGAAACTGTGAAAGATGAACAAG
AAGCAGGTTGGCCATCATTTGGACAGCTACTCTGGGATTTGGCCAAGCTTGCAATAGAGG
GTCTGGGTTCCCTTTTTGGCTATGCCGTTCCTCTGCGGTATAGACCCAAGAGCTTCATTA
GACCCGGACTAACTCCATTGAAAGATTCACTGATCATGCCTGAAGATGAAGTTGAGCCCC
CATTAGTTCAAAAGCAGAGGGCTCCACCACCCGCTTCCGAGATCAGACATGTCCCAGCTG
TCGGTGATAAAGTAGTACCCGAGGGCAAGCCCACCAAGATTAGATCGAGTAGCTCAAAAG
ACCCTAACTTGTCAACGAAGCACAGGTCTTCCAGACGACATGAGTATGCAGAATACTATG
GAGCATCAGGCGAGGTTCCTTCATACGTGCACGTGAGGTCTAAAAGTCAGAAGGAAAGAA
CCAAGCATCGGCGACATGATTCAAGTGTTGGAGCAGCAGGAGTAGAGACAAAACCTGCTG
ATCAACCGAAAGCAGTAAACTATGAGGATCCAAAGTTTGCCCATTACAGCATGAGAAACA
AGTATGGAGACTCTTTCCCCCGGTACGCATGACTCTAGTCTCACTAATGACTTTTAAGTT
TTATAAGCAGGGAGGATCAAACCTTTTTGTCATGTAAGTTGTAACTCTAATATTAATGGA
AGCAAGTCAAGTCAATCAAGTCATATGTGCTGTATTGAGTAATTTCACAGATTTTCCTTT
ACTCTTTTCTGGAGGAAGGAAAAAAAATCTTAAAGTAGTGGCGTACGTCTTGCCGGGGAG
TGAAAGTAATAGGAAAAGGATGAGACATTCATGTGATATCTGAGGTTTGAAAGATGACAG
CCGTGATATTCTTGATGATCAAAACAGTTTTGTTTCTAACTTGTGGAGAATCCTCATTCC
TATCTCCTTAATGAAGCCAGCAGGCGAAACGACGATCGACTCACAAGAAAGTGTAGTAGT
ATTATTTATTTACATAAAGACTTTTGTGTATGTTGTATGAACTTATCTCTCAGTATTTTC
AATAGAATTCTGTCTCATCATTTATATGTATAAATGATGCTGGAAAAAGAGCTTTTTTTT
TTCTT