Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g054300.3.1
CDS Infomation

Phosphatase 2C family protein (AHRD V3.3 *** U5FGH9_POPTR)
Sequence

ATGGGGGGTTGTGCTTCTACCAGCAATCATAGTACTTGTAGTAGCAGGAGCAACGGAGAA
CGAGTTTCCCCTGAATGTTTGGGGATAAGTATGTTTAGTCGAAAGAGGATTAGAAAAACT
TTTTCTGATCCTGTCACTACATTGCAACATCTGACTTCAATACCTAATCGGATATTCAAA
AATGGGAAGAGCAGGACTTCTTGCATATTCACTCAACAGGGTCGTAAAGGCATAAACCAG
GATGCCATGGTTGTCTGGGAAGATTTCATGGCTGAAGATGTGACCTTTTGTGGGGTATTT
GATGGTCATGGTCCACATGGCCATCTTGTCGCACGCAAAGTAAGGGATGCACTGCCCTTG
AAGCTAGCGTCGTTTTTGCAATCATTTGACTCAAAGCACAATGGTTCTACTGCAAATTGC
TGCAGTGGTGATAAAAAATTGGATGTGGTGGATCCTGATAAGGATGGAGGGATGGAGGAT
AAAGTGGACTACTTGTGGAGAGAAGCTTTCCTTAAATCATACAAGGCCATGGATAAAGAA
CTAAGGTCCCATCCTAATTTAGATTGCTTTTGTAGTGGGAGCACTGCCATTACACTTGTG
AAACAGGGTTCAAATCTTTTTATGGGCTATATTGGTGATTCTCGGGCTATCATGGCATCA
AAAGACAGTAATGATTCAATGGTGGCAGTTCAATTGACTGTTGATCTCAAGCCTGACTTA
CCCAAGGAAGCTGAGAGGATAAAACGATGTAAAGGTCGGGTTTTTGCTTTGCAAGATGAG
CCTGAGGTGCAGAGAGTGTGGCTGCCATTTGATGATGCCCCTGGTTTAGCAATGGCTCGG
GCATTTGGGGATTTCTGCTTGAAGGAATATGGGGTGATTTCTGTTCCAGAATTTTCTCAC
CATATTCTTACTGAAAGGGACAAGTTCATAGTTCTAGCTTCTGATGGGGTTTGGGACGTC
TTGAGCAACGAGGAAGTGATTGAGATAGTGTCATCAGCTCCTACACGAGCATCAGCTGCC
CGAATCCTGGTTGACTCAGCTGCACGCGAATGGAAAACTAAATATCCAACATCAAAGATG
GATGATTGTGCAGTTGTTTGCTTATTCTTAGATGGGAAAATGGACTCTGAATCCGATAAC
GAGGATCAATGTTTCTCCTCTGCTACCCTTCAGAGCAACCACTCTGGTAACGCTGTGGAA
TCAGACGATGGACAGAACTCCGAGCCATCTCTGCAGAGGAACTTCACGGTTAGATCAGCT
GAAGAAAACGACACCTACAAACGAATCGTTGCAGAAGTAGAAGCAAATCAAGAAGCTATG
TCAACTGAAGAACAAAACTGGTTAGGATTAGAAGGTGTCACTAGGGTAAACTCCCTAGTT
CAGCTTCCAAGATTTTCTGAAGAAAGGCCAAGACCTTAA

Peptide Sequence

PEP ID

Solyc07g054300.3.1
PEP Infomation

Phosphatase 2C family protein (AHRD V3.3 *** U5FGH9_POPTR)
Sequence

MGGCASTSNHSTCSSRSNGERVSPECLGISMFSRKRIRKTFSDPVTTLQHLTSIPNRIFK
NGKSRTSCIFTQQGRKGINQDAMVVWEDFMAEDVTFCGVFDGHGPHGHLVARKVRDALPL
KLASFLQSFDSKHNGSTANCCSGDKKLDVVDPDKDGGMEDKVDYLWREAFLKSYKAMDKE
LRSHPNLDCFCSGSTAITLVKQGSNLFMGYIGDSRAIMASKDSNDSMVAVQLTVDLKPDL
PKEAERIKRCKGRVFALQDEPEVQRVWLPFDDAPGLAMARAFGDFCLKEYGVISVPEFSH
HILTERDKFIVLASDGVWDVLSNEEVIEIVSSAPTRASAARILVDSAAREWKTKYPTSKM
DDCAVVCLFLDGKMDSESDNEDQCFSSATLQSNHSGNAVESDDGQNSEPSLQRNFTVRSA
EENDTYKRIVAEVEANQEAMSTEEQNWLGLEGVTRVNSLVQLPRFSEERPRP*

Transcript Sequence

Transcript ID

Solyc07g054300.3.1
Transcript Infomation

Phosphatase 2C family protein (AHRD V3.3 *** U5FGH9_POPTR)
Sequence

TATATTTTCTTCCTTAAAAGAATGAGCGTACCCTCTCCTCTTCATTATTTTCCCTTTTTA
TGCTTTTGTAATTAATTAATGCCAACTTCTATCTATTCCCATACTTCTCACTCTCTTCCC
TTCTTCTCCTTTTTCTCTTCTGTTCAACAAAAAAAAGACATAAATCACATTCTTGATCCC
AGCTATCACTAAACCAACTTGAAGTGCAATATTTTGACCAAGATTAAAAAGAATCGCGTT
GGATGCTTGTGAGTTCTACAGTTTTTTTTTTGCTTAGTTCACAATTCAGTCTGATCCAGT
TTCATTGGGAGGAAGAACATTTCTTTTGTTGTGGATCAGATGGTCTCTTTGTGTTTCTGA
GAAAATGGGGGGTTGTGCTTCTACCAGCAATCATAGTACTTGTAGTAGCAGGAGCAACGG
AGAACGAGTTTCCCCTGAATGTTTGGGGATAAGTATGTTTAGTCGAAAGAGGATTAGAAA
AACTTTTTCTGATCCTGTCACTACATTGCAACATCTGACTTCAATACCTAATCGGATATT
CAAAAATGGGAAGAGCAGGACTTCTTGCATATTCACTCAACAGGGTCGTAAAGGCATAAA
CCAGGATGCCATGGTTGTCTGGGAAGATTTCATGGCTGAAGATGTGACCTTTTGTGGGGT
ATTTGATGGTCATGGTCCACATGGCCATCTTGTCGCACGCAAAGTAAGGGATGCACTGCC
CTTGAAGCTAGCGTCGTTTTTGCAATCATTTGACTCAAAGCACAATGGTTCTACTGCAAA
TTGCTGCAGTGGTGATAAAAAATTGGATGTGGTGGATCCTGATAAGGATGGAGGGATGGA
GGATAAAGTGGACTACTTGTGGAGAGAAGCTTTCCTTAAATCATACAAGGCCATGGATAA
AGAACTAAGGTCCCATCCTAATTTAGATTGCTTTTGTAGTGGGAGCACTGCCATTACACT
TGTGAAACAGGGTTCAAATCTTTTTATGGGCTATATTGGTGATTCTCGGGCTATCATGGC
ATCAAAAGACAGTAATGATTCAATGGTGGCAGTTCAATTGACTGTTGATCTCAAGCCTGA
CTTACCCAAGGAAGCTGAGAGGATAAAACGATGTAAAGGTCGGGTTTTTGCTTTGCAAGA
TGAGCCTGAGGTGCAGAGAGTGTGGCTGCCATTTGATGATGCCCCTGGTTTAGCAATGGC
TCGGGCATTTGGGGATTTCTGCTTGAAGGAATATGGGGTGATTTCTGTTCCAGAATTTTC
TCACCATATTCTTACTGAAAGGGACAAGTTCATAGTTCTAGCTTCTGATGGGGTTTGGGA
CGTCTTGAGCAACGAGGAAGTGATTGAGATAGTGTCATCAGCTCCTACACGAGCATCAGC
TGCCCGAATCCTGGTTGACTCAGCTGCACGCGAATGGAAAACTAAATATCCAACATCAAA
GATGGATGATTGTGCAGTTGTTTGCTTATTCTTAGATGGGAAAATGGACTCTGAATCCGA
TAACGAGGATCAATGTTTCTCCTCTGCTACCCTTCAGAGCAACCACTCTGGTAACGCTGT
GGAATCAGACGATGGACAGAACTCCGAGCCATCTCTGCAGAGGAACTTCACGGTTAGATC
AGCTGAAGAAAACGACACCTACAAACGAATCGTTGCAGAAGTAGAAGCAAATCAAGAAGC
TATGTCAACTGAAGAACAAAACTGGTTAGGATTAGAAGGTGTCACTAGGGTAAACTCCCT
AGTTCAGCTTCCAAGATTTTCTGAAGAAAGGCCAAGACCTTAA