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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g054210.3.1
CDS Infomation

light dependent NADH:protochlorophyllide oxidoreductase 2
Sequence

ATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGGTAAA
ACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTG
AAATCTAAATTTACTCCTGCTGCAGGAAACAAGGAATTGACAAGGAAATTAGCGATTGTA
CCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAG
AAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTA
GCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGAC
TTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTC
ATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGT
TCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAA
GAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACAT
TTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGC
CTTATAATTGTTGGCTCCATAACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCA
AAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCA
CCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGT
AACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTT
GCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTG
TTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAA
GAAGCAGGAAAAAGACTTGCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTC
TACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGT
GATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAA

Peptide Sequence

PEP ID

Solyc07g054210.3.1
PEP Infomation

light dependent NADH:protochlorophyllide oxidoreductase 2
Sequence

MALQAASLLPSAFSLHKEGKTSSANLKDSSFFGVALSCNLKSKFTPAAGNKELTRKLAIV
PIRAQTAATTPAITQSTSGQKKTLRKGNVIITGASSGLGLATAKAIGESGDWHVIMACRD
FLKAEKAAKSLGIPKENYTVMHLDLASLESVRQFVDNFRRSGRPLDALVCNAAVYLPTAK
EPTFTADGFELSVGTNHLGHFLLSRLLLDDLKQSDYPQKRLIIVGSITGNTNTLAGNVPP
KANLGDLRGLSGGLNSLNCSPMIDGGEFDGAKAYKDSKVCNMLTMQEYHRRFHEETGIAF
ASLYPGCIAETGLFRNHIPLFRTLFPPFQKYITKGYVSEEEAGKRLAQVVRDPSLSKSGV
YWSWNSTSSSFENQLSKEASDAEKARKLWEVSEKLVGLA*

Transcript Sequence

Transcript ID

Solyc07g054210.3.1
Transcript Infomation

light dependent NADH:protochlorophyllide oxidoreductase 2
Sequence

CACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGT
GAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTT
TCTCTACACAAAGAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGA
GTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGAATTG
ACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATC
ACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGA
GCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCAC
GTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATT
CCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAA
TTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCA
GTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTG
GGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAA
TCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGAAACACAAATACT
TTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGG
TTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCC
TATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCAC
GAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTA
TTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACC
AAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAGGTAGTACGTGATCCA
AGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAAC
CAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAG
AAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGT
CAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATT
TGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAAT
GATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGA
CCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTA
GATAAGACGACTGGTATTTCTAAATATCCATTAATAGCTAGCTTCGTTACTTGTTACCAT
TCATATTTCATTTGCGTATAATAAAAATATTGAATCATAGAGAACTAATA