Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g053660.3.1
CDS Infomation

WD40 repeat-like protein (AHRD V3.3 *** I0Z366_COCSC)
Sequence

ATGAGGTTGAAAGTTATATCTCGGTCTACGGATGATTTTACTCGTGAACGCAGTCAGGAC
CTTCAGAGAGTTTTTCGGAACTTCGATCCCAGCCTTCGACATCAAGAGAAGGCAGTGGAA
TATGTTCGTGCTCTGAATGCAGTAAAACTGGAGAAGATATTTGCAAGGCCATTCGTTGGA
GCAATGGATGGGCACATTGATGCTGTCTCTTGCATGGCAAAGAATCCTAATCACTTGAAA
GGAATATTTTCTGGCTCCATGGACGGTGATGTTCGCCTATGGGATTTGGCTACCAGGCGG
ACAGTACGTCAGTTTCCTGGTCACCAGGGTGCAGTACGTGGTTTGACAGTGTCCACGGAT
GGCCGAATTCTTGTATCATGTGGAACTGATTGCACTGTTAGGCTCTGGAAAGTTCCTGTT
GCTACTCTAATGGAGTCTGATGATGGATCTGATAACTCGTCCCAGCCATTGGCTGTTCAT
GTTTGGAAGAATGCATTCTGGGGTGTTGACCACCAATGGGATGGTGATCTCTTTGCCACA
GCTGGTGCTCAAGTTGACATTTGGAACCATAACAGGTCTCAGCCGGTTAATAGTTTTGAA
TGGGGAAAAGACACAGTTACATCTGTTCGGTTTAATCCAGGGGAACCTAATCTTTTGGCT
ACATCAGCAAGTGATCGAAGCATAAGCATCTATGATTTACGGCTTTCTACACCAGCTAGA
AAGGTTATTATGTCGACAAAAACTAATTCTATAGCATGGAATCCGATGGAGCCAATGAAT
TTTACTGCCGCTAATGATGATGGCAGATGCTACAGTTATGATGTTAGAAAGTTAAATGAA
GCCAAATGTGTGCATATAGATCATACCTCTTCAGTGATGGATATAGATTATTCACCAACC
GGTCGAGAATTCGCTACTGGATCTTATGATAGATCTGTGAGAATTTTCAAATATAATGGT
GGTCACAGCAGGGAAATTTATCACACTAAGAGGATGCAGAGGGTATTCTGTGTCAAGTTC
AGTTGCGATGCAAGTTATATTATCTCAGGAAGTGATGATACCAACCTACGTCTATGGAAA
GCAAAAGCATCTGAGCAAATGGGAGTTGTTTTGCCAAGAGAGCGGAAAAGACATGAATAT
ATGGAGGCTGTCAAGAATCGTTACAAGCATCTTAAAGAAGTCAGGCGCATTGACAGACAT
AGACACTTGCCAAAACCAATCTACAAGGCAAGTAGACAAATACGTGAGATGACAGAATCT
GCGAGGCGGAAAGAGGAGAGGAGGAAAGCTCACAGTGCCCCTGGAAGCATTAAAAATAAG
CAACTGCGAACAAAAAGAATTGTCCGAGAAGTCGAATGA

Peptide Sequence

PEP ID

Solyc07g053660.3.1
PEP Infomation

WD40 repeat-like protein (AHRD V3.3 *** I0Z366_COCSC)
Sequence

MRLKVISRSTDDFTRERSQDLQRVFRNFDPSLRHQEKAVEYVRALNAVKLEKIFARPFVG
AMDGHIDAVSCMAKNPNHLKGIFSGSMDGDVRLWDLATRRTVRQFPGHQGAVRGLTVSTD
GRILVSCGTDCTVRLWKVPVATLMESDDGSDNSSQPLAVHVWKNAFWGVDHQWDGDLFAT
AGAQVDIWNHNRSQPVNSFEWGKDTVTSVRFNPGEPNLLATSASDRSISIYDLRLSTPAR
KVIMSTKTNSIAWNPMEPMNFTAANDDGRCYSYDVRKLNEAKCVHIDHTSSVMDIDYSPT
GREFATGSYDRSVRIFKYNGGHSREIYHTKRMQRVFCVKFSCDASYIISGSDDTNLRLWK
AKASEQMGVVLPRERKRHEYMEAVKNRYKHLKEVRRIDRHRHLPKPIYKASRQIREMTES
ARRKEERRKAHSAPGSIKNKQLRTKRIVREVE*

Transcript Sequence

Transcript ID

Solyc07g053660.3.1
Transcript Infomation

WD40 repeat-like protein (AHRD V3.3 *** I0Z366_COCSC)
Sequence

AGTTTAGGAATAATATATTTCAGGAATTTGTAATTCTTTTCGATATTAGATTAATTATAT
AGAGTAATATTTAAAGGAAAAAATTGACTCATAGAAAAGACATCTGAACCCTAAACCCTC
AAAGGCTTGCCGAAGTTACACCTAGCTTCAAATTTCCCTTGCCGGGGTTCTTCTTCGGAT
AAGTCTGCCGAAGAACCACCACTCTCCCGCCGGATAATTTATTACACCTTCCTCCGTCAT
TACCGGTATATTAGTTAATCAATTCTGCTTACGCTGAAGTTGAAGATATCACTATGAGGT
TGAAAGTTATATCTCGGTCTACGGATGATTTTACTCGTGAACGCAGTCAGGACCTTCAGA
GAGTTTTTCGGAACTTCGATCCCAGCCTTCGACATCAAGAGAAGGCAGTGGAATATGTTC
GTGCTCTGAATGCAGTAAAACTGGAGAAGATATTTGCAAGGCCATTCGTTGGAGCAATGG
ATGGGCACATTGATGCTGTCTCTTGCATGGCAAAGAATCCTAATCACTTGAAAGGAATAT
TTTCTGGCTCCATGGACGGTGATGTTCGCCTATGGGATTTGGCTACCAGGCGGACAGTAC
GTCAGTTTCCTGGTCACCAGGGTGCAGTACGTGGTTTGACAGTGTCCACGGATGGCCGAA
TTCTTGTATCATGTGGAACTGATTGCACTGTTAGGCTCTGGAAAGTTCCTGTTGCTACTC
TAATGGAGTCTGATGATGGATCTGATAACTCGTCCCAGCCATTGGCTGTTCATGTTTGGA
AGAATGCATTCTGGGGTGTTGACCACCAATGGGATGGTGATCTCTTTGCCACAGCTGGTG
CTCAAGTTGACATTTGGAACCATAACAGGTCTCAGCCGGTTAATAGTTTTGAATGGGGAA
AAGACACAGTTACATCTGTTCGGTTTAATCCAGGGGAACCTAATCTTTTGGCTACATCAG
CAAGTGATCGAAGCATAAGCATCTATGATTTACGGCTTTCTACACCAGCTAGAAAGGTTA
TTATGTCGACAAAAACTAATTCTATAGCATGGAATCCGATGGAGCCAATGAATTTTACTG
CCGCTAATGATGATGGCAGATGCTACAGTTATGATGTTAGAAAGTTAAATGAAGCCAAAT
GTGTGCATATAGATCATACCTCTTCAGTGATGGATATAGATTATTCACCAACCGGTCGAG
AATTCGCTACTGGATCTTATGATAGATCTGTGAGAATTTTCAAATATAATGGTGGTCACA
GCAGGGAAATTTATCACACTAAGAGGATGCAGAGGGTATTCTGTGTCAAGTTCAGTTGCG
ATGCAAGTTATATTATCTCAGGAAGTGATGATACCAACCTACGTCTATGGAAAGCAAAAG
CATCTGAGCAAATGGGAGTTGTTTTGCCAAGAGAGCGGAAAAGACATGAATATATGGAGG
CTGTCAAGAATCGTTACAAGCATCTTAAAGAAGTCAGGCGCATTGACAGACATAGACACT
TGCCAAAACCAATCTACAAGGCAAGTAGACAAATACGTGAGATGACAGAATCTGCGAGGC
GGAAAGAGGAGAGGAGGAAAGCTCACAGTGCCCCTGGAAGCATTAAAAATAAGCAACTGC
GAACAAAAAGAATTGTCCGAGAAGTCGAATGAAAAGTGTGGCTGTCTTGATCTGCTGCTG
ATGTTAACCATGCCAGTTTGATCTGCTTAGAAAATTATTACCTATTCTTAACAGTTGTTA
GCTGGCCTATAAGATAGTATACTTTTTTTGATCAGAGGGAAGAATTGGAAGCTTCATCAT
TTCATGTCGTTTTCGAGATATAGTGGTGGTTACTTGTGTTAAAATTATGTTGCTGCCTAC
TCTTTTTCTGTCATCATCTTACGGGTTAACTGCATAGATTTTCCGTGTGGTTTCTTCTCT
TAGAAGTAATTACGTCTGGTATGAATATTTAAATCATGAAGTTGCATTTGCATACCATAT
GAAGGGGCACGGTATACATTTTAACATATTCATTTGTTAAAATTATGTTGCTGCTTACTG
CTTTCAAATAGTGATCAATTTTATTTTTTTTGGATTTTACCTTATGAAGAAAAACATGTT