Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g053560.3.1
CDS Infomation

phosphorelay protein (AHRD V3.3 *** AT5G44150.1)
Sequence

ATGGATGCAAAAGCGTTGGCAAAGTCGAAGAGAGCTCATTCGTTACATCTTAATAAGAAG
CATAATCCACATCATGCATCTAAGGGTTCTTCTGCTGTTTCTGGCACGTCTGCCGGTGAT
AAGAAGGTTACTGTCAAGCAAGTTAAGGAAAAGCCTAAACCGAAGCTCCCATCAAATTGG
GATCGATATGAAGAAGAAAATTCAGATTCTGAAACTGCGACCCCAGCAGGCGCAAGTAAT
GCAAGTGATGTGGTCGAGCCGAGAAGTAAAGGAGCAGATTATGCATACTTGCTTTCGGAG
GCTAAGGATCAGCTTCAGTTTTCTTCAGAGGATGTTTCTTTTGGTGATGATATTTTAGAT
GACTTTTACCAGGGCCTAGGAGCATTACTCTCTGCAAAAGGACAAAGCAAGTCATCGTGG
ATAGCAGAAGACAATTTTGCTATGGAAGATAAGGCACCTCCTCCCACTAAGGCATCATTT
CTTTCACTTGATCTGCAAGCTCTTTCAGAGCAGCTTGAAAGAGCAAGTCTACAAGAGAGA
CTTTTCATTGAACCAGATCTACTTCCTTTGGTACTGAACGATCAGGAGTCGCAATCAGCA
GCTAAAGAGAAACATGACAGCGATCTAGCTTCAAGCAAGAGTTCAACGGCCGAAAAAGAC
TCCAATTCATTAACTTCCACTAACAAAAGCAATGAAAACAGGCATCAAGATTCGCATCTG
GGCACCACAAGCAACAATAGCAGACATCCAACTTTAGCTGATGAATCCTCTAACCCTTCG
ACTGCATCTAAGGATGAGGCTGGACAGAATGATACACTGATGTGTGTTTCTAAGAAACCG
TCTGCATTTAAGGCAGCAGCTGCAGAAGCAGAGCTTGACATGCTTCTTGATTCAGTCACC
GAGATTGAAATTTGTGAATCCACCAACGTTATTGACCAGTCTATTCGTCCTTTCCCTGCG
ACACAAGCAGGAACACCAACTCCATTATCAGAGGTTTCCACTCAGCCCAAGCGAGACCAC
GATCAACCCAAACCTGCAATATCAGATATCAGTTTGGACGATACACTGGATGATCTTCTC
AAAGAAACATCCATTGTGACTAAGGTAAGCTCTACTGCTGGTCATGCATCCTCTGCTTCT
CAACCTGTCTCGAAGTCCAAAATTATCGATGATTTTGATTCATGGTTTGACACATTGTAA

Peptide Sequence

PEP ID

Solyc07g053560.3.1
PEP Infomation

phosphorelay protein (AHRD V3.3 *** AT5G44150.1)
Sequence

MDAKALAKSKRAHSLHLNKKHNPHHASKGSSAVSGTSAGDKKVTVKQVKEKPKPKLPSNW
DRYEEENSDSETATPAGASNASDVVEPRSKGADYAYLLSEAKDQLQFSSEDVSFGDDILD
DFYQGLGALLSAKGQSKSSWIAEDNFAMEDKAPPPTKASFLSLDLQALSEQLERASLQER
LFIEPDLLPLVLNDQESQSAAKEKHDSDLASSKSSTAEKDSNSLTSTNKSNENRHQDSHL
GTTSNNSRHPTLADESSNPSTASKDEAGQNDTLMCVSKKPSAFKAAAAEAELDMLLDSVT
EIEICESTNVIDQSIRPFPATQAGTPTPLSEVSTQPKRDHDQPKPAISDISLDDTLDDLL
KETSIVTKVSSTAGHASSASQPVSKSKIIDDFDSWFDTL*

Transcript Sequence

Transcript ID

Solyc07g053560.3.1
Transcript Infomation

phosphorelay protein (AHRD V3.3 *** AT5G44150.1)
Sequence

TCTTTTTCAAGTGTCGATCCAGAATTCAAGTATCTGAGTTCAGTTCAAGTTTTTCTTCTT
CCTGCCATGTTATTTCGATTTTATTTATCATTAGCATCATTTTGATTTCGAGTTTTATTG
CGGTGTGATTAATCAAGAGTTCTGAACAGAGAAAATGGATGCAAAAGCGTTGGCAAAGTC
GAAGAGAGCTCATTCGTTACATCTTAATAAGAAGCATAATCCACATCATGCATCTAAGGG
TTCTTCTGCTGTTTCTGGCACGTCTGCCGGTGATAAGAAGGTTACTGTCAAGCAAGTTAA
GGAAAAGCCTAAACCGAAGCTCCCATCAAATTGGGATCGATATGAAGAAGAAAATTCAGA
TTCTGAAACTGCGACCCCAGCAGGCGCAAGTAATGCAAGTGATGTGGTCGAGCCGAGAAG
TAAAGGAGCAGATTATGCATACTTGCTTTCGGAGGCTAAGGATCAGCTTCAGTTTTCTTC
AGAGGATGTTTCTTTTGGTGATGATATTTTAGATGACTTTTACCAGGGCCTAGGAGCATT
ACTCTCTGCAAAAGGACAAAGCAAGTCATCGTGGATAGCAGAAGACAATTTTGCTATGGA
AGATAAGGCACCTCCTCCCACTAAGGCATCATTTCTTTCACTTGATCTGCAAGCTCTTTC
AGAGCAGCTTGAAAGAGCAAGTCTACAAGAGAGACTTTTCATTGAACCAGATCTACTTCC
TTTGGTACTGAACGATCAGGAGTCGCAATCAGCAGCTAAAGAGAAACATGACAGCGATCT
AGCTTCAAGCAAGAGTTCAACGGCCGAAAAAGACTCCAATTCATTAACTTCCACTAACAA
AAGCAATGAAAACAGGCATCAAGATTCGCATCTGGGCACCACAAGCAACAATAGCAGACA
TCCAACTTTAGCTGATGAATCCTCTAACCCTTCGACTGCATCTAAGGATGAGGCTGGACA
GAATGATACACTGATGTGTGTTTCTAAGAAACCGTCTGCATTTAAGGCAGCAGCTGCAGA
AGCAGAGCTTGACATGCTTCTTGATTCAGTCACCGAGATTGAAATTTGTGAATCCACCAA
CGTTATTGACCAGTCTATTCGTCCTTTCCCTGCGACACAAGCAGGAACACCAACTCCATT
ATCAGAGGTTTCCACTCAGCCCAAGCGAGACCACGATCAACCCAAACCTGCAATATCAGA
TATCAGTTTGGACGATACACTGGATGATCTTCTCAAAGAAACATCCATTGTGACTAAGGT
AAGCTCTACTGCTGGTCATGCATCCTCTGCTTCTCAACCTGTCTCGAAGTCCAAAATTAT
CGATGATTTTGATTCATGGTTTGACACATTGTAACTGAACACCAGATTGGGAAATTTTTC
CCATGATAACACCACAAATTGTGTAATTCTGAGTGTTAACCTTCTACCATTCGTGTTAAA
AATCTAACCTTTGTCAACTCGTGTTAATATCGAAAGAAATTTATGTATTATTTTATGCAA
AAACTAAATCTTGTGTTACTCAACTCC