Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g053360.3.1
CDS Infomation

Late embryogenesis abundant domain-containing family protein (AHRD V3.3 *** B9IQP9_POPTR)
Sequence

ATGGCTTCAGAGCAAGCGAGAAGAGAGAATGTTACTGATGAAAGGAAAATCCAGCTTGAG
AAAGATAAAGTTCATAAAATTGCTAGTCATTTCGAGTCCCTAGCTGATAAAGTTCATGAG
GAGGATACATCAACTTCTCCTCCTGATGTTGTTCATGTCAAGACTACTGTTACTGGTACT
GTTCCTCATCCATCGGAGAAACAACGATCATCTGATATAATCGATAAAACTCAAGGGAGT
AAGCAACAGGTCTTCCAAGAGAAACCAGAAGGTGTTAAATTTGGAGTTCAGGGCCAAGAA
CACGAAGATTCCGTTATGAACAGAGGAAAACAGAGCGAAGGCGGTGCTGAAGAGACGAAA
AGTGGTCCGTCTTTGGAGGAAATTTCTCAGTACAGAGCAACGGCACAGCAGAAATCGATG
AACGCGATAAGGGGTGCTGAAGAGCGATATGAAAAGGCGAAGGGAATGGGTGGTTCGACA
TTGCAGAATGTTAAAGAATCTACAACTCATGGAATTGCTGCTGCGGCAGCAGAAAAGGGT
GCACAAGCTAAAGACACCATTACTCAGGGCCTTCAAAAGGGAACTCAGTATATTGCTGAA
AAAACTGGAGCTGCTAAAGACGTCGCTGTCGAAAAAGGCCAACAAGCTTATGCTGCAACT
AAGGATACCCTTTCGGGTGCCGGACAAACTGCAGCTGAATCAGCTCAACAAGCTAAAGAT
TACACAATGCAAAAAACAGGGGAAGCTAAAGACACCCTTTCGGGTGCCGGACAAACTGCA
GCTGAATCAGCACAACAGGCTAAAGATTACACTATGCAAAAAACAGGGGATACTAAAGAT
TACACAATGCAAAAAACAGGGGAGGCGAAAGATTATGTTGCTGAAAAAACAGGGGAAATT
AAAGAACAGAGCAAAGGTGCAGCGAGTTATGTAGGCGAAAAGGCAGCACAAGTTAAAGAT
GTTACATTAGAAACAGGAAAAGGCGCGGTAGGATACGCAGGGAAAGTAGCTGAAACAGTG
AAGGACAAAACGGTTGTAGCTGGATGGGGAGTTGCACATTTCACTGCTGAAAAAGCTGCA
GATGCAACTAAAGCTATAGCTGGTGTTACTTCTACCGTCGCAGGGTACGCCGGAGGAACG
ACAGTGGCCGCAAAGGATTTGGTGGTTGATGCTGGAAAGAAAACAGTGGGATTTGCAGAG
GATACGTTGGCTGCTGCCAAGGATTTTGTAGTTTCAGCTGAAGAAAGTGCAGCAGAGTAT
GCAGCTAGGAAAAAAGCAGAAGCAGAGAGAGAATTAGAAGCTAAGAAGTTACAAGAAGAC
ACCAAGGGAGAAAACAGAGGAGGACCGAAGATTGATGAAAAAAAGCGTGGATTCAAATCC
AAAGAGGAAACCGAAGAATCTTACTTGGAGGAACACGGAGGAGGGGATAAAGAAAGCAGC
AAGCCGGTGGAAGGTGCAGCGGTGGTGTTGCAAGCCATTGGCGAAACTATAGTTGAGATT
GGGAAAACAACTACTGAACTTGTTGCAGGTCGCCCTCGAGATGAACCAGTTGAGGGAATT
GAGGAAGAGTCTACTACTACCACAATGAAGAAAACTTGA

Peptide Sequence

PEP ID

Solyc07g053360.3.1
PEP Infomation

Late embryogenesis abundant domain-containing family protein (AHRD V3.3 *** B9IQP9_POPTR)
Sequence

MASEQARRENVTDERKIQLEKDKVHKIASHFESLADKVHEEDTSTSPPDVVHVKTTVTGT
VPHPSEKQRSSDIIDKTQGSKQQVFQEKPEGVKFGVQGQEHEDSVMNRGKQSEGGAEETK
SGPSLEEISQYRATAQQKSMNAIRGAEERYEKAKGMGGSTLQNVKESTTHGIAAAAAEKG
AQAKDTITQGLQKGTQYIAEKTGAAKDVAVEKGQQAYAATKDTLSGAGQTAAESAQQAKD
YTMQKTGEAKDTLSGAGQTAAESAQQAKDYTMQKTGDTKDYTMQKTGEAKDYVAEKTGEI
KEQSKGAASYVGEKAAQVKDVTLETGKGAVGYAGKVAETVKDKTVVAGWGVAHFTAEKAA
DATKAIAGVTSTVAGYAGGTTVAAKDLVVDAGKKTVGFAEDTLAAAKDFVVSAEESAAEY
AARKKAEAERELEAKKLQEDTKGENRGGPKIDEKKRGFKSKEETEESYLEEHGGGDKESS
KPVEGAAVVLQAIGETIVEIGKTTTELVAGRPRDEPVEGIEEESTTTTMKKT*

Transcript Sequence

Transcript ID

Solyc07g053360.3.1
Transcript Infomation

Late embryogenesis abundant domain-containing family protein (AHRD V3.3 *** B9IQP9_POPTR)
Sequence

TCATCCATCATATAGAAATTTATATTGTAATTTTTGTTTTGTTATCAACGACGACAATGG
CTTCAGAGCAAGCGAGAAGAGAGAATGTTACTGATGAAAGGAAAATCCAGCTTGAGAAAG
ATAAAGTTCATAAAATTGCTAGTCATTTCGAGTCCCTAGCTGATAAAGTTCATGAGGAGG
ATACATCAACTTCTCCTCCTGATGTTGTTCATGTCAAGACTACTGTTACTGGTACTGTTC
CTCATCCATCGGAGAAACAACGATCATCTGATATAATCGATAAAACTCAAGGGAGTAAGC
AACAGGTCTTCCAAGAGAAACCAGAAGGTGTTAAATTTGGAGTTCAGGGCCAAGAACACG
AAGATTCCGTTATGAACAGAGGAAAACAGAGCGAAGGCGGTGCTGAAGAGACGAAAAGTG
GTCCGTCTTTGGAGGAAATTTCTCAGTACAGAGCAACGGCACAGCAGAAATCGATGAACG
CGATAAGGGGTGCTGAAGAGCGATATGAAAAGGCGAAGGGAATGGGTGGTTCGACATTGC
AGAATGTTAAAGAATCTACAACTCATGGAATTGCTGCTGCGGCAGCAGAAAAGGGTGCAC
AAGCTAAAGACACCATTACTCAGGGCCTTCAAAAGGGAACTCAGTATATTGCTGAAAAAA
CTGGAGCTGCTAAAGACGTCGCTGTCGAAAAAGGCCAACAAGCTTATGCTGCAACTAAGG
ATACCCTTTCGGGTGCCGGACAAACTGCAGCTGAATCAGCTCAACAAGCTAAAGATTACA
CAATGCAAAAAACAGGGGAAGCTAAAGACACCCTTTCGGGTGCCGGACAAACTGCAGCTG
AATCAGCACAACAGGCTAAAGATTACACTATGCAAAAAACAGGGGATACTAAAGATTACA
CAATGCAAAAAACAGGGGAGGCGAAAGATTATGTTGCTGAAAAAACAGGGGAAATTAAAG
AACAGAGCAAAGGTGCAGCGAGTTATGTAGGCGAAAAGGCAGCACAAGTTAAAGATGTTA
CATTAGAAACAGGAAAAGGCGCGGTAGGATACGCAGGGAAAGTAGCTGAAACAGTGAAGG
ACAAAACGGTTGTAGCTGGATGGGGAGTTGCACATTTCACTGCTGAAAAAGCTGCAGATG
CAACTAAAGCTATAGCTGGTGTTACTTCTACCGTCGCAGGGTACGCCGGAGGAACGACAG
TGGCCGCAAAGGATTTGGTGGTTGATGCTGGAAAGAAAACAGTGGGATTTGCAGAGGATA
CGTTGGCTGCTGCCAAGGATTTTGTAGTTTCAGCTGAAGAAAGTGCAGCAGAGTATGCAG
CTAGGAAAAAAGCAGAAGCAGAGAGAGAATTAGAAGCTAAGAAGTTACAAGAAGACACCA
AGGGAGAAAACAGAGGAGGACCGAAGATTGATGAAAAAAAGCGTGGATTCAAATCCAAAG
AGGAAACCGAAGAATCTTACTTGGAGGAACACGGAGGAGGGGATAAAGAAAGCAGCAAGC
CGGTGGAAGGTGCAGCGGTGGTGTTGCAAGCCATTGGCGAAACTATAGTTGAGATTGGGA
AAACAACTACTGAACTTGTTGCAGGTCGCCCTCGAGATGAACCAGTTGAGGGAATTGAGG
AAGAGTCTACTACTACCACAATGAAGAAAACTTGAAATGGACCTACATCGTTTCGTTTTG
GTTTTGGTTTTGATTTTGGTTTTCGATTTTCTAGTTCTATAGACTATTGAATAATAATTA
GTCGCAAATCGTGTAGAAACTGTGTTCTCTAGGTTTGTTTTTGTGTTAATAATAGTGACT
TGTACTTTTGGTGCGTCGCATTAAAGCCTTGACGATGTATCGTTTCTT