Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g052970.3.1
CDS Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** A0A072UUN1_MEDTR)
Sequence

ATGGATGTTTCTTGTGATCTTCAAGTGGATGTCAATGGTGAACAAGTCTTTATGGTAGAT
AAGAAGGTTATATGTTCGTATTCAGGGAGAATAAACAAACTGATAGGGAAATCGAAACGA
GGGACACGATATTTAAAGGTGATATTTCATGACTTTCCTGGTGGAGCTGAGAGTTTTGAG
CTAATTACAAGATTCTGTTACAGCAAAGGGAAGATTGAGATAAATTCTGTTAATGTTTCA
ACTCTATATTGTGCTGCCTCATATATGGAAATGAAGAAATCTGTATCAGGGAACCAAAAT
CTGTTTGAACTAACTGAGAAATCGCTCGAAGATGTTAGGTATTGGACTTGGTCTGAGCTT
CTTGATGCTCTAAGATTGTGTCAAAATTTGATGCCTGTGGCAAGTTCTTCAGGTGTAATT
GATAAATACCTGGATTCTCTTATTGGGAGGGTTGCTTCTTCGTGTGAAACGAGCCCTTGT
CCGTCAACTTCCTCTGCTGACAGCTCTGGATTTCGGTTGTCTTGTGATACGAAAAGTACA
GAGAGCTTGAGAAATAGTGCATTTCGAGCAACATGGTGGTTTGAGGATCTTGCTTCTTTC
GAGCCGTTTTTGATTGAAACTTTGGTTAAGCAAATGGTATCCAAAAACATTGACCATGGA
CTTCTTAGTAAGTTCCTCTTCTGTTACCAAAAATCAAGATTTTCAGTGGCGGACGAGAAA
TGCAAGACCATGGAGACTGTTATTGAGATGCTTCATTTGCTAGATTCAAGCTGCATTTCC
TTCAAAACCTTGTTTGGAATGCTTCGAATTACTCTAACTCTGAAGATAAGCAAGTTCTCC
CGGAACAAGTTAGAGAGCATGATTGGCTCCCAGTTGGATCAAGCGACTTTGGATAACCTC
CTGCTCCCGTCACCTGTTGGATCGAGTTATTTATATGATGTAAATTTAGTTCTTAGGTTA
TTGAAATCATTCATCAGCAAAGGGGCATGTTGTGTTCCGTTAACTCGATTGAGGAAAGTT
GCTAGCTTGATAGACTTGTACATAGCAGAAGTAGCTCCTGATCCATGCCTAAAACCTTCC
AAGTTCCTTGCCCTGATCAGGTCGCTCCCCGAGTCTGCTAGGGACTCATATGATGCCATA
TACCATGCCACGGTTATGTATCTCGAGGTTCATTCAGGGTTATCCGAAGAGGAAAAGATG
AACGTATGTAGTGGACTAAGCTACGAGAAGCTATCATCGGAGGCTTGTAGCCACCTTGCT
CGTAACAAAAAGTTCCCTTCAAAATCTGCTGGACAAGCTCTCATAACTCAGCAAGTAAAG
CTCAAAAGCTTACTTCAAGAAACCAATCAAGCCAGTCCATACCTCGATTCGCCTTGTAGT
TTGCTGGAAACAGGAAGTCCAGGACATGAAGATCAACAAATCGTGCTATACGCGGGAAAG
CTAGATCTTTCAACAGAGAATGAGAAGCTCAAAGAACATTTACAAGGCATGCAATGGAGA
GTACTAGAATTGGAAAAAGCTTGTAGGAAAATGCAAAATCAAATGGCAAAGATGTTGAAA
TCAAGAATATCTAGCCATAATAATGCTAGATCATTACCTAGGCTATGTTCTTGA

Peptide Sequence

PEP ID

Solyc07g052970.3.1
PEP Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** A0A072UUN1_MEDTR)
Sequence

MDVSCDLQVDVNGEQVFMVDKKVICSYSGRINKLIGKSKRGTRYLKVIFHDFPGGAESFE
LITRFCYSKGKIEINSVNVSTLYCAASYMEMKKSVSGNQNLFELTEKSLEDVRYWTWSEL
LDALRLCQNLMPVASSSGVIDKYLDSLIGRVASSCETSPCPSTSSADSSGFRLSCDTKST
ESLRNSAFRATWWFEDLASFEPFLIETLVKQMVSKNIDHGLLSKFLFCYQKSRFSVADEK
CKTMETVIEMLHLLDSSCISFKTLFGMLRITLTLKISKFSRNKLESMIGSQLDQATLDNL
LLPSPVGSSYLYDVNLVLRLLKSFISKGACCVPLTRLRKVASLIDLYIAEVAPDPCLKPS
KFLALIRSLPESARDSYDAIYHATVMYLEVHSGLSEEEKMNVCSGLSYEKLSSEACSHLA
RNKKFPSKSAGQALITQQVKLKSLLQETNQASPYLDSPCSLLETGSPGHEDQQIVLYAGK
LDLSTENEKLKEHLQGMQWRVLELEKACRKMQNQMAKMLKSRISSHNNARSLPRLCS*

Transcript Sequence

Transcript ID

Solyc07g052970.3.1
Transcript Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** A0A072UUN1_MEDTR)
Sequence

TACTAGTTACTTTGGTAAAACAATATTTGTTTTGATACCAAGAAAATAATTTTAAAATAA
TACTTTATTTTAATTTTATTATAATATATACATAAGGATGTTGTGAGTGACTGCTCATGG
AAGTAACATTTTTTGGTTTCATTTTGTGTTAGTGAGTCTGACTATTATAAATTCATATTT
TATATGACTTCATTTAGTAAAAACTTTTTTGCCGATAATTTTAAGGTCTACAATTAAAAA
AAATCTCATCGAGTTTACCACATCACAAATACTATTAAATATTAAATATTTGTGATACAA
AAAAATGGCATAAAATAGTTGATATATAATATAAGTTTGACAGTGTGGGGGCTATTGATT
TAGCATATGTTTATCTGAAATTGACTCGTATTATTTTTATAGGAATGTCAGATACAGATT
AGTGGGCAGTCAACAACTCTCTTTGTCTTACCATTTTTCTCTCTTACTCTTCACAGTGAA
AGTATATATATTTTTTCCCCTTTTATTATTATGTGTATTTGTATTTAACTCTGTCCCCCT
TCTTTGCTTCACCCATACTCTTGTCTCTCTTGAGTTTTTATTATTATTCTCAGTTTGTAT
TATCAAGAATACATCTTTTTTCATTTGTCTTTATGCTTATTTCAGAATAACTTCTTGTTT
TCTTCTCAAATCTATGTGGGTATTTTCCAACATTAGTTTTTTATTCAACTAAATCCTAAA
AAGGGACTCTTAATTTGACTCTAATGGATGTTTCTTGTGATCTTCAAGTGGATGTCAATG
GTGAACAAGTCTTTATGGTAGATAAGAAGGTTATATGTTCGTATTCAGGGAGAATAAACA
AACTGATAGGGAAATCGAAACGAGGGACACGATATTTAAAGGTGATATTTCATGACTTTC
CTGGTGGAGCTGAGAGTTTTGAGCTAATTACAAGATTCTGTTACAGCAAAGGGAAGATTG
AGATAAATTCTGTTAATGTTTCAACTCTATATTGTGCTGCCTCATATATGGAAATGAAGA
AATCTGTATCAGGGAACCAAAATCTGTTTGAACTAACTGAGAAATCGCTCGAAGATGTTA
GGTATTGGACTTGGTCTGAGCTTCTTGATGCTCTAAGATTGTGTCAAAATTTGATGCCTG
TGGCAAGTTCTTCAGGTGTAATTGATAAATACCTGGATTCTCTTATTGGGAGGGTTGCTT
CTTCGTGTGAAACGAGCCCTTGTCCGTCAACTTCCTCTGCTGACAGCTCTGGATTTCGGT
TGTCTTGTGATACGAAAAGTACAGAGAGCTTGAGAAATAGTGCATTTCGAGCAACATGGT
GGTTTGAGGATCTTGCTTCTTTCGAGCCGTTTTTGATTGAAACTTTGGTTAAGCAAATGG
TATCCAAAAACATTGACCATGGACTTCTTAGTAAGTTCCTCTTCTGTTACCAAAAATCAA
GATTTTCAGTGGCGGACGAGAAATGCAAGACCATGGAGACTGTTATTGAGATGCTTCATT
TGCTAGATTCAAGCTGCATTTCCTTCAAAACCTTGTTTGGAATGCTTCGAATTACTCTAA
CTCTGAAGATAAGCAAGTTCTCCCGGAACAAGTTAGAGAGCATGATTGGCTCCCAGTTGG
ATCAAGCGACTTTGGATAACCTCCTGCTCCCGTCACCTGTTGGATCGAGTTATTTATATG
ATGTAAATTTAGTTCTTAGGTTATTGAAATCATTCATCAGCAAAGGGGCATGTTGTGTTC
CGTTAACTCGATTGAGGAAAGTTGCTAGCTTGATAGACTTGTACATAGCAGAAGTAGCTC
CTGATCCATGCCTAAAACCTTCCAAGTTCCTTGCCCTGATCAGGTCGCTCCCCGAGTCTG
CTAGGGACTCATATGATGCCATATACCATGCCACGGTTATGTATCTCGAGGTTCATTCAG
GGTTATCCGAAGAGGAAAAGATGAACGTATGTAGTGGACTAAGCTACGAGAAGCTATCAT
CGGAGGCTTGTAGCCACCTTGCTCGTAACAAAAAGTTCCCTTCAAAATCTGCTGGACAAG
CTCTCATAACTCAGCAAGTAAAGCTCAAAAGCTTACTTCAAGAAACCAATCAAGCCAGTC
CATACCTCGATTCGCCTTGTAGTTTGCTGGAAACAGGAAGTCCAGGACATGAAGATCAAC
AAATCGTGCTATACGCGGGAAAGCTAGATCTTTCAACAGAGAATGAGAAGCTCAAAGAAC
ATTTACAAGGCATGCAATGGAGAGTACTAGAATTGGAAAAAGCTTGTAGGAAAATGCAAA
ATCAAATGGCAAAGATGTTGAAATCAAGAATATCTAGCCATAATAATGCTAGATCATTAC
CTAGGCTATGTTCTTGATTTATTTTACTATAATCAATATTATTATTTTTTGAAATGTTTT
GTGTCAATAGCAAAGTCTACTATTACAATTACTCCCTCTATTCCTCTGTCTCATTTTATA
TGATGTACTTCC