Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc07g047620.2.1
CDS Infomation	Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9SW54_RICCO)
Sequence	ATGCAAACGGAAAAAAAAGCACCTATTAATCGTTGTGGTAAATTAAGCAAGCAGCTGTAC CCTTTGCCATCAAAATCTTCAGTTTTCAAAGATGGGTGTCCTGCAGTGGCTCAAAGCTTC AAGAAGAGAAAAAGGTTCTTCCTTTATTGCGAGGTGTTTGTGAAATCGATAGCCACTAAA CAAAGCAAATTGGATCCAATTCCGCTGCCTCACAGAACTATTTCTGAGCCGAAAGGACAA GATCTTGATTTTGTTAATGTAGCTCATAGTCATCTTGTACACTCTGATTGGACTAAGCTT GAGAATTTGTCTTCTGGTTTAACCCAATTTAGAGTTAAGCATATTTTGCTGAAAATTCAA AAAGATTATGTTTTATCTCTTGAATTCTTCAAATGGGTTGAGGTTAAAAGTCCGAATTCG AATACCCTTGAGAATCATTCCATTGTTCTTCATGTTCTTACTAAGAGTAAGAAGTTCAAA TCTGCTGAGTCAATTTTGAGGAAGCTTCTTGAATCAGGTTCTGTAGATTTTCCTGGTAAA TTGTTTGAAGCTATACTTTTATCATATCGAATTTGTGATTCTTCACCGCGTGTTTTTGAC TCATTGTTCAAGTGTCATGCTCATTTGAAGAAGTTTAGGAATGCTAGTGATACATTTTGC AGTATGAAGCAGTATGGGTTTGTTCCCACTGTTGAGTCTTGCAATGCATTTATGAGCGCG TTGCTTAGTTCTGATAGGGTAGATGTTGCATTGGCTTTTTACAAGGAGATGCGTCGGTCT AAGATTTCGCCTAATGTTTATACCTTTAATATGGTCGTGAGTGCTTTATGCAAATCGGGA AAACTAGAAAAGGCTGTTGAGGTCTTAAGGGAGATGGAGAACATAAGTTTGAAACCGACA GCTGTGTCTTATAACACTTTGATTGCTGGACATTGTAACCGGGACCTCTTGAGTGTTGCA ATGAAACTTAAGACCACGATGGAGATGAATGGGATACAACCAGTTAATGTTACATACAAC ACTCTTATTCATGGTTTATGCAAGGTAGGGAAATTACATGAAGCAAACAAACTTTTCAGC GAGATGAAGAGAACCGGTGTGGCTCCTAATGTTGTCACTTATAATACGCTGATAAACGCA TATAGTCAGGTTGGTAATTCTGAAATGGGAAGTAGGCTTTTCGAGGAGATGGCAAACAAT GGATTGAAAGCTGATATCTTGACTTACAATGCATTGATTATGGGACTGTGCAAGGAGATG AAGACAAAGAAAGCTGCATTGTTGGTCAAAGAACTTGATAATGCTAACTTAGTTCCTAAT TCCTCTACTTTCTCTTATCTGATCAGTGGACAGTGTACCAGAAGGAATCCTGATCGTGCA TTTCAACTCTATAAAAGCATGGTTAGAGGTGGTTTTTACCCTAATAAGCCCACGTTGACT CTATTGATATCCACCTTCATCAAGAATGAGGATTATGATGGAGCAATGGAAGTCTTGAAA GAGATGCTAGAAAGATCTATTACCCCTGACGTGGGTATGTTAACTGAAATATGCAGCATG TTTCTCAGATGTGGCAGAGACGGCGTGATTATAAAACTCTTACAAGAACTAGAAGCGAAA CGCCTCATGCCTGAAGGTTTTGATAAAACAACAGTTCTCAGCACTCAGGTTTGGTCCTCT GGACAGCAACCCGGCTGGTATATACCCCATATAGGAAACTGGGCTCTGGGATGTGAGAGC AGTTAG

Peptide Sequence

PEP ID	Solyc07g047620.2.1
PEP Infomation	Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9SW54_RICCO)
Sequence	MQTEKKAPINRCGKLSKQLYPLPSKSSVFKDGCPAVAQSFKKRKRFFLYCEVFVKSIATK QSKLDPIPLPHRTISEPKGQDLDFVNVAHSHLVHSDWTKLENLSSGLTQFRVKHILLKIQ KDYVLSLEFFKWVEVKSPNSNTLENHSIVLHVLTKSKKFKSAESILRKLLESGSVDFPGK LFEAILLSYRICDSSPRVFDSLFKCHAHLKKFRNASDTFCSMKQYGFVPTVESCNAFMSA LLSSDRVDVALAFYKEMRRSKISPNVYTFNMVVSALCKSGKLEKAVEVLREMENISLKPT AVSYNTLIAGHCNRDLLSVAMKLKTTMEMNGIQPVNVTYNTLIHGLCKVGKLHEANKLFS EMKRTGVAPNVVTYNTLINAYSQVGNSEMGSRLFEEMANNGLKADILTYNALIMGLCKEM KTKKAALLVKELDNANLVPNSSTFSYLISGQCTRRNPDRAFQLYKSMVRGGFYPNKPTLT LLISTFIKNEDYDGAMEVLKEMLERSITPDVGMLTEICSMFLRCGRDGVIIKLLQELEAK RLMPEGFDKTTVLSTQVWSSGQQPGWYIPHIGNWALGCESS*

Transcript Sequence

Transcript ID	Solyc07g047620.2.1
Transcript Infomation	Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9SW54_RICCO)
Sequence	ATGCAAACGGAAAAAAAAGCACCTATTAATCGTTGTGGTAAATTAAGCAAGCAGCTGTAC CCTTTGCCATCAAAATCTTCAGTTTTCAAAGATGGGTGTCCTGCAGTGGCTCAAAGCTTC AAGAAGAGAAAAAGGTTCTTCCTTTATTGCGAGGTGTTTGTGAAATCGATAGCCACTAAA CAAAGCAAATTGGATCCAATTCCGCTGCCTCACAGAACTATTTCTGAGCCGAAAGGACAA GATCTTGATTTTGTTAATGTAGCTCATAGTCATCTTGTACACTCTGATTGGACTAAGCTT GAGAATTTGTCTTCTGGTTTAACCCAATTTAGAGTTAAGCATATTTTGCTGAAAATTCAA AAAGATTATGTTTTATCTCTTGAATTCTTCAAATGGGTTGAGGTTAAAAGTCCGAATTCG AATACCCTTGAGAATCATTCCATTGTTCTTCATGTTCTTACTAAGAGTAAGAAGTTCAAA TCTGCTGAGTCAATTTTGAGGAAGCTTCTTGAATCAGGTTCTGTAGATTTTCCTGGTAAA TTGTTTGAAGCTATACTTTTATCATATCGAATTTGTGATTCTTCACCGCGTGTTTTTGAC TCATTGTTCAAGTGTCATGCTCATTTGAAGAAGTTTAGGAATGCTAGTGATACATTTTGC AGTATGAAGCAGTATGGGTTTGTTCCCACTGTTGAGTCTTGCAATGCATTTATGAGCGCG TTGCTTAGTTCTGATAGGGTAGATGTTGCATTGGCTTTTTACAAGGAGATGCGTCGGTCT AAGATTTCGCCTAATGTTTATACCTTTAATATGGTCGTGAGTGCTTTATGCAAATCGGGA AAACTAGAAAAGGCTGTTGAGGTCTTAAGGGAGATGGAGAACATAAGTTTGAAACCGACA GCTGTGTCTTATAACACTTTGATTGCTGGACATTGTAACCGGGACCTCTTGAGTGTTGCA ATGAAACTTAAGACCACGATGGAGATGAATGGGATACAACCAGTTAATGTTACATACAAC ACTCTTATTCATGGTTTATGCAAGGTAGGGAAATTACATGAAGCAAACAAACTTTTCAGC GAGATGAAGAGAACCGGTGTGGCTCCTAATGTTGTCACTTATAATACGCTGATAAACGCA TATAGTCAGGTTGGTAATTCTGAAATGGGAAGTAGGCTTTTCGAGGAGATGGCAAACAAT GGATTGAAAGCTGATATCTTGACTTACAATGCATTGATTATGGGACTGTGCAAGGAGATG AAGACAAAGAAAGCTGCATTGTTGGTCAAAGAACTTGATAATGCTAACTTAGTTCCTAAT TCCTCTACTTTCTCTTATCTGATCAGTGGACAGTGTACCAGAAGGAATCCTGATCGTGCA TTTCAACTCTATAAAAGCATGGTTAGAGGTGGTTTTTACCCTAATAAGCCCACGTTGACT CTATTGATATCCACCTTCATCAAGAATGAGGATTATGATGGAGCAATGGAAGTCTTGAAA GAGATGCTAGAAAGATCTATTACCCCTGACGTGGGTATGTTAACTGAAATATGCAGCATG TTTCTCAGATGTGGCAGAGACGGCGTGATTATAAAACTCTTACAAGAACTAGAAGCGAAA CGCCTCATGCCTGAAGGTTTTGATAAAACAACAGTTCTCAGCACTCAGGTTTGGTCCTCT GGACAGCAACCCGGCTGGTATATACCCCATATAGGAAACTGGGCTCTGGGATGTGAGAGC AGTTAG