Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g044850.3.1
CDS Infomation

transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT5G08560.3)
Sequence

ATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAA
TTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGAC
TCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTT
GTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAA
AAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAAT
TTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAAT
ATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTGTGATATTGGAGCAGAAG
TTTTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAG
ATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCA
CCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGT
ACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTATGGTTCCAGAAAAG
AGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCAC
AACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATT
CCATCTCTAACAATGCAGATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTT
TCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAG
GTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTC
TCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCT
GTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTT
AAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCTGTGGTGTAACTGAC
AAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTTGGAAAGGCCACAGG
GCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATGTTATCTCTGTTTGT
AAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGAGAGTAATTCAGGAG
GATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATGTGTTGGTTAGTCTT
TCAAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTGTAAAACTTGTAGCCAAATAT
AAGGGGCATAAACGTTCTCGGTTCGTTGTGAGGTCTTGCTTTGGAGGACTAGATCAAGCT
TTTATTGCCAGTGGAAGCGAGGATTCACAGGTTTATATATGGCACAGAGGCTCAGGTGAA
CTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAACTGTGTTAGCTGGAACCCAACA
AATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAAT
CGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGT
TGA

Peptide Sequence

PEP ID

Solyc07g044850.3.1
PEP Infomation

transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT5G08560.3)
Sequence

MGAEDDDEPPSKRVKVSSSQLVDISDRTFVRDPVSCSLGDSMARPLTLQGDDEVVGTKGV
VKKVEFVRIITEALDSLGYKKTRALLEEESGIPLHTSVVNLFMQQILDGKWDESLNTLRN
IGLVDEKIVKLASFVILEQKFFELLHKEKVMDALRTLRGEISPLCINNDRVHQLSFFIIS
PSQQVLTGVSGQGTARVKSRTELLEELQRLLPPTVMVPEKRLVHLVEQALDLQLDACRFH
NSVVGEMSLLSDHHCGRDHIPSLTMQILHEHKDEVWFLQFSHNGKYLASSSADFAVIIWE
VKLDGSVCMKHRLLGHETYVSYISWSPDDHQLLTCGEEEAVIRWDVESGVRIHTYEKKFV
KFISCGWAPDGKRIFCGVTDKSISMWDLEGKELECWKGHRATRISDLGITSDGKHVISVC
KENMIVLVGWESKVERVIQEDQAITSFVLSMDSKYVLVSLSNQEIHLWNIEGTVKLVAKY
KGHKRSRFVVRSCFGGLDQAFIASGSEDSQVYIWHRGSGELVATLAGHSGAVNCVSWNPT
NPHMLASASDDGTIRIWGDNRVNTKQHDTANGVNYCNGRS*

Transcript Sequence

Transcript ID

Solyc07g044850.3.1
Transcript Infomation

transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT5G08560.3)
Sequence

TACAAGGGGACCCTAGTTGAGTAAAATGCAAACAACTCTTTCCTCCCATTTCTCTATTCA
CAAGTTCTCCATTACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCA
ATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCT
TAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGA
TTTGCTGGTTTTTCAATCAGTGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTG
GGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGA
ATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGA
GAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATG
ATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCT
GACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGG
TATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTT
GTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTG
GTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATT
CTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACA
CTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAA
ACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTGTGA
TATTGGAGCAGAAGTTTTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGA
CACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGT
TTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGA
GAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTA
TGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATG
CTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCG
GAAGAGATCATATTCCATCTCTAACAATGCAGATATTACATGAACATAAAGATGAAGTCT
GGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCG
TAATTATATGGGAGGTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTC
ACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTG
GTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATG
AGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCT
GTGGTGTAACTGACAAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTT
GGAAAGGCCACAGGGCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATG
TTATCTCTGTTTGTAAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGA
GAGTAATTCAGGAGGATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATG
TGTTGGTTAGTCTTTCAAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTGTAAAAC
TTGTAGCCAAATATAAGGGGCATAAACGTTCTCGGTTCGTTGTGAGGTCTTGCTTTGGAG
GACTAGATCAAGCTTTTATTGCCAGTGGAAGCGAGGATTCACAGGTTTATATATGGCACA
GAGGCTCAGGTGAACTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAACTGTGTTA
GCTGGAACCCAACAAATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTA
TATGGGGCGATAATCGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACT
GCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCT
TTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTAT
GACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCC
ATATTTTAGATTTTCTTTTCCATTTA