Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g043600.3.1
CDS Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9T2X9_RICCO)
Sequence

ATGCCTCAAACAATGATGATATTCCTCAAACCATTCATTTCTCCTTCATCTTCTTCTCTT
TGGAGTAAATCAAATAGTGGTGAGAATTCATTGAAAACAAATGTTAAAATATGTAAAAGA
GCTGAAGTGGTGTGTCAAGGCATGCTGACGCCGAGAAAGTTCATGCAGAAGAGGAGGAAA
GTAGAGGTTTTCAAGAGTGCTGAGGATGAAGCAGATCAGAAAAACTGGAGAAAGATGATG
AATGAAATTGAAGAAGCTGGTTCTGCTGTTTCAGTGCTGAGAACCCAGAGGGACAAGAAC
CAGGCTCTTCCAAAGAACCTTGTTCTTGGAAGCTTGGTTAGATTTAAGCAGCTTAAGAAG
TGGAACCTTGTTAGTGAGATTCTTGAATGGCTTCGAACTCAGCATTGGTGGGATTTTAAT
GAGATGGACTTTCTGATGCTTATTACAGCTTACGGGAAGCAAGGGGACTTCAGTAAAGCT
GAAAGGATTTTAGGCTACATGAATAAGAAGGGCTATCCTGCCAATGTGATATCACACACT
GCTCTGATGGAGGCATATGGAAAAGGAGGTCAGTATGCCAAGGCAGAAGCGATATTTCGG
AGAATGCAAACTTCAGGCCCTGAGCCTTCTGCTATTACATACCAAATCATTCTCAAAATC
TTTGTTGAGGAGTTAATGCAGGGTGACAAGTTTAATGAAGCTCAAGATGTCTTTGAAGCC
CTTATGGATATGGATGCACCTCCTCTAAAACCAGACCAGAAAATGTTCCACATGATGATC
TATATGTATAAGAAGGCAGGAAAATATGAAAAAGCTCGTCATCTATTTTCTTTGATGACC
GAGCGAGGAATTCCACAAAATACCGTTACTTACAACAGTTTGATGTCATTTGAGACCAAC
TATAAGGAGGTCGCAAACATTTATGATCAGATGCAAAGAGCTGGTCTTCAACCTGATGTT
GTTAGCTATGCACTGCTCATTAGTGCATATGGAAAGGCTAGAAGAGAAGAGGAGGCACTA
GCTGTTTTTGAGGAAATGCTTGATGCTGGTGTCAGGCCAACACAAAAGTCTTACAACATC
TTGCTAGATGCATTTGCTATCTCAGGAATGGTAGAACAGGCTCGGACTGTCTTCAAAAGC
ATGCGAAGAGACAGATGTAGCCCTGACCTTTGCTCATACACAACAATGCTATCAGCTTAT
ATTAATGCATCAGATATGGAAGGTGCAGAGAAATTTTTCAGAAGAATAAAGCAAGATGGA
TTGGAGCCCAATGTTGTTACATATGGCGCACTGATTAAGGGATATGCAAAAACAAATGAC
CTCGAAAAGATGATGGAGAAATATGAAGAAATGCGGGTTCATGGTATCAAGACTAACCAA
ACTATCTTCACTACAATCATGGACGCGTATGGTAGGAATAAGGATTTTGGCAGTGCCGTT
GCTTGGTTCAATGAAATGGCATCTTCAGGTGTCTCTCCTGATCAAAAAGCAAAGAACATT
CTCTTGTCCTTGGCAAAAACATCTGAAGAACAGATGGAAGCTAAGCAAATCACAGGATGT
GCCAACGAGCTGATAGTCGACAGTATTTCCAGAGAAAAATTGGATCAACTGATAATTAGT
GGTAGTGCTGCATCTCAGACATAA

Peptide Sequence

PEP ID

Solyc07g043600.3.1
PEP Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9T2X9_RICCO)
Sequence

MPQTMMIFLKPFISPSSSSLWSKSNSGENSLKTNVKICKRAEVVCQGMLTPRKFMQKRRK
VEVFKSAEDEADQKNWRKMMNEIEEAGSAVSVLRTQRDKNQALPKNLVLGSLVRFKQLKK
WNLVSEILEWLRTQHWWDFNEMDFLMLITAYGKQGDFSKAERILGYMNKKGYPANVISHT
ALMEAYGKGGQYAKAEAIFRRMQTSGPEPSAITYQIILKIFVEELMQGDKFNEAQDVFEA
LMDMDAPPLKPDQKMFHMMIYMYKKAGKYEKARHLFSLMTERGIPQNTVTYNSLMSFETN
YKEVANIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGVRPTQKSYNI
LLDAFAISGMVEQARTVFKSMRRDRCSPDLCSYTTMLSAYINASDMEGAEKFFRRIKQDG
LEPNVVTYGALIKGYAKTNDLEKMMEKYEEMRVHGIKTNQTIFTTIMDAYGRNKDFGSAV
AWFNEMASSGVSPDQKAKNILLSLAKTSEEQMEAKQITGCANELIVDSISREKLDQLIIS
GSAASQT*

Transcript Sequence

Transcript ID

Solyc07g043600.3.1
Transcript Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9T2X9_RICCO)
Sequence

CTTCCCGAAAATTTAAAACTAAAACAGTATTATGTGCTTTAGCTTTAAAAAATAGGATAA
ACAAAATGAGAAGAAATATCCCTTCAACTCCATGAGCATGAAAGTTGGAGTCTTGTAGTG
CAGTGAAGGTGAAGGGGAACCAAATTGTAAATTGTAAATGCCTCAAACAATGATGATATT
CCTCAAACCATTCATTTCTCCTTCATCTTCTTCTCTTTGGAGTAAATCAAATAGTGGTGA
GAATTCATTGAAAACAAATGTTAAAATATGTAAAAGAGCTGAAGTGGTGTGTCAAGGCAT
GCTGACGCCGAGAAAGTTCATGCAGAAGAGGAGGAAAGTAGAGGTTTTCAAGAGTGCTGA
GGATGAAGCAGATCAGAAAAACTGGAGAAAGATGATGAATGAAATTGAAGAAGCTGGTTC
TGCTGTTTCAGTGCTGAGAACCCAGAGGGACAAGAACCAGGCTCTTCCAAAGAACCTTGT
TCTTGGAAGCTTGGTTAGATTTAAGCAGCTTAAGAAGTGGAACCTTGTTAGTGAGATTCT
TGAATGGCTTCGAACTCAGCATTGGTGGGATTTTAATGAGATGGACTTTCTGATGCTTAT
TACAGCTTACGGGAAGCAAGGGGACTTCAGTAAAGCTGAAAGGATTTTAGGCTACATGAA
TAAGAAGGGCTATCCTGCCAATGTGATATCACACACTGCTCTGATGGAGGCATATGGAAA
AGGAGGTCAGTATGCCAAGGCAGAAGCGATATTTCGGAGAATGCAAACTTCAGGCCCTGA
GCCTTCTGCTATTACATACCAAATCATTCTCAAAATCTTTGTTGAGGAGTTAATGCAGGG
TGACAAGTTTAATGAAGCTCAAGATGTCTTTGAAGCCCTTATGGATATGGATGCACCTCC
TCTAAAACCAGACCAGAAAATGTTCCACATGATGATCTATATGTATAAGAAGGCAGGAAA
ATATGAAAAAGCTCGTCATCTATTTTCTTTGATGACCGAGCGAGGAATTCCACAAAATAC
CGTTACTTACAACAGTTTGATGTCATTTGAGACCAACTATAAGGAGGTCGCAAACATTTA
TGATCAGATGCAAAGAGCTGGTCTTCAACCTGATGTTGTTAGCTATGCACTGCTCATTAG
TGCATATGGAAAGGCTAGAAGAGAAGAGGAGGCACTAGCTGTTTTTGAGGAAATGCTTGA
TGCTGGTGTCAGGCCAACACAAAAGTCTTACAACATCTTGCTAGATGCATTTGCTATCTC
AGGAATGGTAGAACAGGCTCGGACTGTCTTCAAAAGCATGCGAAGAGACAGATGTAGCCC
TGACCTTTGCTCATACACAACAATGCTATCAGCTTATATTAATGCATCAGATATGGAAGG
TGCAGAGAAATTTTTCAGAAGAATAAAGCAAGATGGATTGGAGCCCAATGTTGTTACATA
TGGCGCACTGATTAAGGGATATGCAAAAACAAATGACCTCGAAAAGATGATGGAGAAATA
TGAAGAAATGCGGGTTCATGGTATCAAGACTAACCAAACTATCTTCACTACAATCATGGA
CGCGTATGGTAGGAATAAGGATTTTGGCAGTGCCGTTGCTTGGTTCAATGAAATGGCATC
TTCAGGTGTCTCTCCTGATCAAAAAGCAAAGAACATTCTCTTGTCCTTGGCAAAAACATC
TGAAGAACAGATGGAAGCTAAGCAAATCACAGGATGTGCCAACGAGCTGATAGTCGACAG
TATTTCCAGAGAAAAATTGGATCAACTGATAATTAGTGGTAGTGCTGCATCTCAGACATA
A