Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g043130.3.1
CDS Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT2G30520.1)
Sequence

ATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAA
TGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTT
AATCTTCACAAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGAT
ACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATG
TTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTT
GCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAAT
CTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCA
CTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATT
CAAAGATGTGTTGACATCGCCGGTGCTAAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGA
TCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGA
ATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATC
ACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGA
TTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATT
GTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTG
CGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAAAGGATA
TCAGCAATACTAGAACACGTGACAGTCGATGATCTGTTAGTCTTGTCTTTTTCTTACGAC
GGAGAAAGACTATTCGATCTTGAGAGCGTGAGGAGAATCATTTCCGGATTTATGGAGAAA
GAGAAGAGTGTAGCTGTGTTTAAAGGTGGTGATTTTGGAGACGTTTGTACCACCGCTATG
CAGAGAGTTGCAAAGACTGTCGATGCTTATCTTGGTGAAATCGCTACATTTGGAGATCTC
AGTATATCAAAATTCAATGGAATTGCTATTTTGGTTCCTAAGGGCGCGAGAAAGGCTGAT
GATGATCTTTATCGAGCTGTTGATATCTACTTGAAGGCACATCCACATTTGGATGAAATT
GAAAGAGAAAAAGTGTGTAGTGTGATGGATCCTTTGAAACTATCACATGAAGCAAGAGTC
CATGCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGAT
CAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATG
GCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGA
ACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGT
CAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACA
TTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGAT
GCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAA

Peptide Sequence

PEP ID

Solyc07g043130.3.1
PEP Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT2G30520.1)
Sequence

MATPLKNTNRLSLAMERTGQWVFSQEIPTDVIVEVGEANFNLHKFMLVAKSNYIRKLILD
TKESDVSRINLSDIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEYLQMTDKYCDNN
LASRTEDFLAQVALTSLSGALVVLKSCENLLPLAHDLNIIQRCVDIAGAKACVEANFPSR
SPPNWWTEELTILDVAFFERIIVAMKTRGAKALTIASAIITYTERSLRDLVRDHSGNNTR
LMVPEDSDMRMHQRELLESIVTLLPAERAAFPINFLCCLLRTAIFLRAASSCKNELEKRI
SAILEHVTVDDLLVLSFSYDGERLFDLESVRRIISGFMEKEKSVAVFKGGDFGDVCTTAM
QRVAKTVDAYLGEIATFGDLSISKFNGIAILVPKGARKADDDLYRAVDIYLKAHPHLDEI
EREKVCSVMDPLKLSHEARVHASQNKRLPVQIVLHALYFDQLKIRSGAADDSNNNMPEAM
ATRNQLQADVSLVKENEVLRTELLKMKMYIADIQKTTNSSQGTSKGSLKKTTFFSSVSKT
LGKFNPFKHGSKDTSSIVDDAALDLTKPRRRRFSIS*

Transcript Sequence

Transcript ID

Solyc07g043130.3.1
Transcript Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT2G30520.1)
Sequence

TCAAGACAGACAAACTTTTCTCTATGTATCTTATATAATAAGACCCCTACTCTTTATTAT
ATCCACATAAAAGTTTTCCGCTCTATGCACTAAAACCAATCTCACATGGCTACTCCTCTC
AAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGGTATTTTCACAA
GAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGTTC
ATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGAT
GTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCC
AAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGT
GCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACA
GAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAG
TCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGAC
ATCGCCGGTGCTAAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGG
TGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATG
AAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGA
TCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAG
GATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCC
GCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTC
TTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAAAGGATATCAGCAATACTAGAA
CACGTGACAGTCGATGATCTGTTAGTCTTGTCTTTTTCTTACGACGGAGAAAGACTATTC
GATCTTGAGAGCGTGAGGAGAATCATTTCCGGATTTATGGAGAAAGAGAAGAGTGTAGCT
GTGTTTAAAGGTGGTGATTTTGGAGACGTTTGTACCACCGCTATGCAGAGAGTTGCAAAG
ACTGTCGATGCTTATCTTGGTGAAATCGCTACATTTGGAGATCTCAGTATATCAAAATTC
AATGGAATTGCTATTTTGGTTCCTAAGGGCGCGAGAAAGGCTGATGATGATCTTTATCGA
GCTGTTGATATCTACTTGAAGGCACATCCACATTTGGATGAAATTGAAAGAGAAAAAGTG
TGTAGTGTGATGGATCCTTTGAAACTATCACATGAAGCAAGAGTCCATGCTTCTCAAAAC
AAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGG
AGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAA
TTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAG
ATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAA
GGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAAT
CCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTT
ACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAAT
TTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGA
TTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTTTGTTGATAC
AGTAAGTTTGTCTTTTCAACAATCTTTAATTTCT