Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g042750.3.1
CDS Infomation

Pseudouridine synthase family protein (AHRD V3.3 *** AT1G78910.1)
Sequence

ATGAGGTGGAACAAAGATGAAAGTCGTTGCTTACTATTTCTGGTCAGGCGCTTTTCTAGA
TCTGTGGGCCATTCTGCACAAGCATATCGTTGTGAACCTGTGATTCGAGTGTCAAACAAT
ATTACACATTTAGGCCGTCAAAAGGATGGTGTAAAACCTAGCCAGCTATTGTCTTTACCT
CCATTTCCTGGCTGTCCTTTGCCAGGAAAGAAAGTGGCCACCGGTCCTGACCAACCATCT
TGTCATGTTACTGCCATTAGCTGGATCAAATACTACTTTGATGAGATACCAGGCTCGGTC
ATCCAATCCCATTTTAATAAGGGCCTCGTGCAGTTAGAGTTAAATGAGTTATTTACAAGC
AAGGAAGGACAAACTAGATTGTTGAGGAAGATTAAGCATTCCGAGGTCATGGAAGTTGGT
GCAAGAATTCATGTGCCCATATCTGTTGCTGAAACAAGAATATCAAAACGATATGATGTT
ATACCTAGTGGCACTTTGTATCCTAATGCTGATGAAATAGCATACTTGCAAAGGCTTGTA
TTTTACAAGGATCCCGCCATACTTGTTCTAAACAAGCCCCCTAAGCTGCCTGTAAAGGGA
AACCTTCACGTGCATAATAGCATGGATGCCTTGGCAGCCGCAGCATTGTCTTATGAATAT
GATGAGGGTCCTAGGCTGTCAAAAATAGGAGTTATATTTGCTGGTGAAGAAGCAATTGTG
GTGGTACATCGTCTTGATAGAGAGAGCAGTGGCCTTCATTTAATGGGAAGAACGGAAGAA
AGTATCTCCCATCTTCATTTATTGTTCAGCAACACAAAAAGGTCCAAGTCCCTATCTAAG
GCATGGAATGATGCATGTGGGTCAACATATCAGAGGTATTGGGCGTTGGTAATAGGTTCC
CCCAAGGTGAAGGAAGGCGTGATCTCTGCACCACTTACAAAGGTGCTTCTTGATGATGGT
AGAACTGAGAGAGTCATGTTGGCTCAACAGTCGGGATTAGAAGCTTCTGATGAGGCTGTT
ACCGAATATCGACTGCTTGGTCCAATGATCAATGGATGCTCATGGATTGAGTTGCGCCCT
CATACAAGTAGAAAACATCAGCTTCGAGTTCATTGTGCTGAAGCCCTTGGAACTCCAATT
GTGGGCGACTACAAGTATGGTTGGTTTGTCCATCGCAAATGGAAGCAGATGCCGAGAGTA
GATGTTGAGCCGATAACAGGTAAACCCTACAGATTAAAGAGGCCGGAAGGTTTGGATGTT
CAGAAAGGAAGTGTCTTGTCTAAGGTCCCTTTGTTACATCTGCATTGTAGGGAGCTTGTG
CTCCCAAATATTGCCAAATTTATTGAGCTTCACAGTCGAAAAACAAGAAAAAACACAGAT
TATAGCTCAAAACCAGATCTCCTCCGGTTTGTAGCACCGATGCCATCTCCCATGAAAATT
AGTTGGAAGCTTATGTCCTCTTGCTTGATATGA

Peptide Sequence

PEP ID

Solyc07g042750.3.1
PEP Infomation

Pseudouridine synthase family protein (AHRD V3.3 *** AT1G78910.1)
Sequence

MRWNKDESRCLLFLVRRFSRSVGHSAQAYRCEPVIRVSNNITHLGRQKDGVKPSQLLSLP
PFPGCPLPGKKVATGPDQPSCHVTAISWIKYYFDEIPGSVIQSHFNKGLVQLELNELFTS
KEGQTRLLRKIKHSEVMEVGARIHVPISVAETRISKRYDVIPSGTLYPNADEIAYLQRLV
FYKDPAILVLNKPPKLPVKGNLHVHNSMDALAAAALSYEYDEGPRLSKIGVIFAGEEAIV
VVHRLDRESSGLHLMGRTEESISHLHLLFSNTKRSKSLSKAWNDACGSTYQRYWALVIGS
PKVKEGVISAPLTKVLLDDGRTERVMLAQQSGLEASDEAVTEYRLLGPMINGCSWIELRP
HTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDVEPITGKPYRLKRPEGLDV
QKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTRKNTDYSSKPDLLRFVAPMPSPMKI
SWKLMSSCLI*

Transcript Sequence

Transcript ID

Solyc07g042750.3.1
Transcript Infomation

Pseudouridine synthase family protein (AHRD V3.3 *** AT1G78910.1)
Sequence

GTTGCCTTTTGTAATTTGTGAATAAAAAGTTGAACGATCTCTTTAATGCCCTCACGTCTT
CAAGAAGAGTCTTTTCTCCATAAACTATACTGCTCTTTCTTGCCCAGTTTACAGGTAACC
ACTTTTAACCAAAGACCTTGTACACATTCTCGAGGGCAGTATTCATGTCAAAGAATTCTT
GGTATAATATAGATACAAAATAGTTCTACAATGTTGAATTGATACTCAATAAAGCACCAT
CAATACCTCATATAAAAAGAAGTTACATTTATAGAAGCACAACCCAGAAGATGCTAAGGT
CTAGGATGTGATGAGGTGGAACAAAGATGAAAGTCGTTGCTTACTATTTCTGGTCAGGCG
CTTTTCTAGATCTGTGGGCCATTCTGCACAAGCATATCGTTGTGAACCTGTGATTCGAGT
GTCAAACAATATTACACATTTAGGCCGTCAAAAGGATGGTGTAAAACCTAGCCAGCTATT
GTCTTTACCTCCATTTCCTGGCTGTCCTTTGCCAGGAAAGAAAGTGGCCACCGGTCCTGA
CCAACCATCTTGTCATGTTACTGCCATTAGCTGGATCAAATACTACTTTGATGAGATACC
AGGCTCGGTCATCCAATCCCATTTTAATAAGGGCCTCGTGCAGTTAGAGTTAAATGAGTT
ATTTACAAGCAAGGAAGGACAAACTAGATTGTTGAGGAAGATTAAGCATTCCGAGGTCAT
GGAAGTTGGTGCAAGAATTCATGTGCCCATATCTGTTGCTGAAACAAGAATATCAAAACG
ATATGATGTTATACCTAGTGGCACTTTGTATCCTAATGCTGATGAAATAGCATACTTGCA
AAGGCTTGTATTTTACAAGGATCCCGCCATACTTGTTCTAAACAAGCCCCCTAAGCTGCC
TGTAAAGGGAAACCTTCACGTGCATAATAGCATGGATGCCTTGGCAGCCGCAGCATTGTC
TTATGAATATGATGAGGGTCCTAGGCTGTCAAAAATAGGAGTTATATTTGCTGGTGAAGA
AGCAATTGTGGTGGTACATCGTCTTGATAGAGAGAGCAGTGGCCTTCATTTAATGGGAAG
AACGGAAGAAAGTATCTCCCATCTTCATTTATTGTTCAGCAACACAAAAAGGTCCAAGTC
CCTATCTAAGGCATGGAATGATGCATGTGGGTCAACATATCAGAGGTATTGGGCGTTGGT
AATAGGTTCCCCCAAGGTGAAGGAAGGCGTGATCTCTGCACCACTTACAAAGGTGCTTCT
TGATGATGGTAGAACTGAGAGAGTCATGTTGGCTCAACAGTCGGGATTAGAAGCTTCTGA
TGAGGCTGTTACCGAATATCGACTGCTTGGTCCAATGATCAATGGATGCTCATGGATTGA
GTTGCGCCCTCATACAAGTAGAAAACATCAGCTTCGAGTTCATTGTGCTGAAGCCCTTGG
AACTCCAATTGTGGGCGACTACAAGTATGGTTGGTTTGTCCATCGCAAATGGAAGCAGAT
GCCGAGAGTAGATGTTGAGCCGATAACAGGTAAACCCTACAGATTAAAGAGGCCGGAAGG
TTTGGATGTTCAGAAAGGAAGTGTCTTGTCTAAGGTCCCTTTGTTACATCTGCATTGTAG
GGAGCTTGTGCTCCCAAATATTGCCAAATTTATTGAGCTTCACAGTCGAAAAACAAGAAA
AAACACAGATTATAGCTCAAAACCAGATCTCCTCCGGTTTGTAGCACCGATGCCATCTCC
CATGAAAATTAGTTGGAAGCTTATGTCCTCTTGCTTGATATGAACATAACAAGTAATAGC
AATAAAAAGCTACTACTTGTTATGTTGTTGTTGTTCTACTTGATTATTTCCTCAAGCTAA
TATTGGAGGTTTAATGTGTACATATTCTATATTTTTTGGAAGAAGCTATTTCATATATAT
TTCTAGTGATGGAT