Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g041870.3.1
CDS Infomation

tubulin-tyrosine ligase (AHRD V3.3 *** AT1G77550.1)
Sequence

ATGAACAAACTTCAATCCTTGGACGATTTTGTTAAGGTCCACGGCGTACTTCTAGCGGCC
GCCGGCATCCCTCAGTCACTCTACAAGCTTCTCTTTCAGAAGCTCTCTTCCGATACTTTC
GACGGCGGCCACTATCTCCAGATTGAGCCTATTGAAGATGGCCGCCAAAGAAGGCTACTT
TCCACTTCTGGTTTTATCGCCAAACACTCCAATCTCTTCCTTGTTGATCATGCTTGGACT
TTTCGACTATCCGATGCTTATAAGCAGTTGTGTGAAGTTCCGGGTTTAGCAGAAAGAATG
GCTGCATTAATGTGTGTAGATGTTGATTTGGACTCAGCAACTGAGCAGGAAGGTGAAGAG
GATAGTAGCAAATTGAGTGCAGTGGAAATAGTGGAGAGAGAAATGTGTAAAGTAAAAGAA
GGCCAGGATTATACGAGATGGTTGGAGCTTGAGGAACTTGACGTTGATGATCACATGCTT
GTATCTCTTGATTTGCCTAGTAAATTTCCAAACTTACTGGCACTGAGCCTGTGCGGCAAC
AATCTGAGCGATGTTGAGGTTGTTTCTAAGGAAGTTACCCGACTCAACAATCTTAAAGCT
CTCTGGCTGAATAATAATCCGGTTTTGGAGAATAGTAATTCGGAGGCTGCAATCATTCAG
GGTTGTCCTAGTTTGGAAATTTGCAACTCAAAATTTACATCTAACTATGGAGAGTGGGCA
TTAGGATTTTGTGGTGGAATCTATGACAAAGACAATGCAGACTGTGCTCATCAAAGAGAT
CATCCTTTGGAGACTGTGACATCTCTAGACCTTAGTAACAGGTCTATTCGCAATCTGATG
AACAAGGCATTTAATCCTGAAGAGATCACATCTCTTTCTTATTTAAACTTGCGTGGAAAT
CCATTGGACCAGAATTGTCTTAGTGATTTATTTCAGCTTCTTAAACGATTCAGTTGCTTG
CATTCTCTGGAGGTGGATATCCCAGGGCCTTTAGGAGAAAGTGCTGCTGAAATTGTTGAA
GCCCTGCCTAATCTTTCTCTACTAAATGGAGTAAACACATCGAAAATAATGGAGTCCGGG
AAGTCTGTGGTTGATTCAATGTTGCAACCACGTTTTCCTAAATGGACTGCTGGAGAACCT
CTAACAGATCGTGTCATTAATGCTATGTGGTTGTACTTAATGACGTATAGACTTGCCGAT
GAAGAAAAAATTGACGAAACCTCTGTATGGTATGTAATGGATGAACTTGGTTCTGCTTTG
CGCCACAGCGACAAGCCAAATTTTAGAGTCTCTCCTTTTCTCTACATGCCAGAGGGCAAT
TTGGCATCAGCTATGAGTTATTCAATTCTTTGGCCGATTGATGATGTTCGAGAAGGTGAT
GAGTGCACTCGGGATTACCTATTTGGTATCGGGGAAGAGAAGCAACGATCTGCTCGCCTA
ACTGCTTGGTTCCATACACCAAAAAATTATTTTATCAAAGAATATGAAAAATACAAGAAC
AAATTGCAATCAATCAAAATTGCTAGCCCAGTACAGGGGTCATCAATTACAAGTAGTCTG
TTTTGTGGTGAGGGAAGAGCTTTACGTGTGTACGCTGACATACCTCAAGTGGAGGAATAT
TTGACTCGTCCTGAGTTTGTTATCACAACTGAGCCCAAAGATGCAGACATTATATGGACA
AGCATGCAGATAGACAAGGAGACAAAGAAGGCAACAGGAATAAATGATGAACAATACATA
AATCAATTTCCATTTGAGGCTTGCGTGGTTATGAAACATCACTTGGCTGAAACTATTCAG
AAGGCTCATGGGTTGGTCGAATGGCTTCAGCCTACTTATAATCTTGAGACACAGCTAAGT
CACCTTATTGGAGATTTTCATATACGTGAAATAGAGAATCTAGACAATTTGTGGATCTTG
AAGCCATGGAACATGGCAAGAACTATTGATACGACAATAAATAGCAATCTATCTGCTATT
ATTCGTCTCATGGAGACTGGCCCAAAAATCTGTCAGAAGTACATTGAGCATCCTGCTCTA
TTTAAAGGGAGAAAATTTGATCTCCGATATATTGTCTTGGTTCGCAGTATAGAACCCCTG
GAGATCTTCCTTGCAGAAGTTTTCTGGGTTAGATTGGCAAACAACACATACACTTTGGAG
AAACATAGCTTTGATCAATATGAGACTCATTTTACTGTTATGAACTACAGAGGCAAGTTG
AACCATATGAACACACCAGAGTTTGTGAAAGAATTTGAGAAAGAACATGAGGTCAAGTGG
CTGGATATCCACTCAAGGATTAGAAATATGATCAAATCGGCTTTTGAAGCAGCAGCTGCT
GTGCATCCAGAAATGCATCATAGCAAATCTAGGGCAATGTATGGGGTTGATGTCATGCTC
GATAGCCATTTTCAGCCTAAATTATTGGAGATTACCTACTGCCCAGACTGTACTAGGGCA
GTCACATATGACACTGAAGCTGTCGTCGGTGGAGGAGAAACTGTTAAAGGAAAAGAGTTC
TACAACTATATCTTTGGCTGTCTTTTTCTAAATGAAACTAATCATGTTTCCCAATTGTGA

Peptide Sequence

PEP ID

Solyc07g041870.3.1
PEP Infomation

tubulin-tyrosine ligase (AHRD V3.3 *** AT1G77550.1)
Sequence

MNKLQSLDDFVKVHGVLLAAAGIPQSLYKLLFQKLSSDTFDGGHYLQIEPIEDGRQRRLL
STSGFIAKHSNLFLVDHAWTFRLSDAYKQLCEVPGLAERMAALMCVDVDLDSATEQEGEE
DSSKLSAVEIVEREMCKVKEGQDYTRWLELEELDVDDHMLVSLDLPSKFPNLLALSLCGN
NLSDVEVVSKEVTRLNNLKALWLNNNPVLENSNSEAAIIQGCPSLEICNSKFTSNYGEWA
LGFCGGIYDKDNADCAHQRDHPLETVTSLDLSNRSIRNLMNKAFNPEEITSLSYLNLRGN
PLDQNCLSDLFQLLKRFSCLHSLEVDIPGPLGESAAEIVEALPNLSLLNGVNTSKIMESG
KSVVDSMLQPRFPKWTAGEPLTDRVINAMWLYLMTYRLADEEKIDETSVWYVMDELGSAL
RHSDKPNFRVSPFLYMPEGNLASAMSYSILWPIDDVREGDECTRDYLFGIGEEKQRSARL
TAWFHTPKNYFIKEYEKYKNKLQSIKIASPVQGSSITSSLFCGEGRALRVYADIPQVEEY
LTRPEFVITTEPKDADIIWTSMQIDKETKKATGINDEQYINQFPFEACVVMKHHLAETIQ
KAHGLVEWLQPTYNLETQLSHLIGDFHIREIENLDNLWILKPWNMARTIDTTINSNLSAI
IRLMETGPKICQKYIEHPALFKGRKFDLRYIVLVRSIEPLEIFLAEVFWVRLANNTYTLE
KHSFDQYETHFTVMNYRGKLNHMNTPEFVKEFEKEHEVKWLDIHSRIRNMIKSAFEAAAA
VHPEMHHSKSRAMYGVDVMLDSHFQPKLLEITYCPDCTRAVTYDTEAVVGGGETVKGKEF
YNYIFGCLFLNETNHVSQL*

Transcript Sequence

Transcript ID

Solyc07g041870.3.1
Transcript Infomation

tubulin-tyrosine ligase (AHRD V3.3 *** AT1G77550.1)
Sequence

TTTTCTGTATATATAATATATCTTTTTCATTTTTTTGAAAAGAAGACAACCAAACATGGT
CTTAGCATCTAAAACCTAGTTTGTAAAACCCTTTTGCCTATCTTCGTCAAGTTAGCGAGT
GAGCTTACGTCAAAACTCAGTAGAAATGAACAAACTTCAATCCTTGGACGATTTTGTTAA
GGTCCACGGCGTACTTCTAGCGGCCGCCGGCATCCCTCAGTCACTCTACAAGCTTCTCTT
TCAGAAGCTCTCTTCCGATACTTTCGACGGCGGCCACTATCTCCAGATTGAGCCTATTGA
AGATGGCCGCCAAAGAAGGCTACTTTCCACTTCTGGTTTTATCGCCAAACACTCCAATCT
CTTCCTTGTTGATCATGCTTGGACTTTTCGACTATCCGATGCTTATAAGCAGTTGTGTGA
AGTTCCGGGTTTAGCAGAAAGAATGGCTGCATTAATGTGTGTAGATGTTGATTTGGACTC
AGCAACTGAGCAGGAAGGTGAAGAGGATAGTAGCAAATTGAGTGCAGTGGAAATAGTGGA
GAGAGAAATGTGTAAAGTAAAAGAAGGCCAGGATTATACGAGATGGTTGGAGCTTGAGGA
ACTTGACGTTGATGATCACATGCTTGTATCTCTTGATTTGCCTAGTAAATTTCCAAACTT
ACTGGCACTGAGCCTGTGCGGCAACAATCTGAGCGATGTTGAGGTTGTTTCTAAGGAAGT
TACCCGACTCAACAATCTTAAAGCTCTCTGGCTGAATAATAATCCGGTTTTGGAGAATAG
TAATTCGGAGGCTGCAATCATTCAGGGTTGTCCTAGTTTGGAAATTTGCAACTCAAAATT
TACATCTAACTATGGAGAGTGGGCATTAGGATTTTGTGGTGGAATCTATGACAAAGACAA
TGCAGACTGTGCTCATCAAAGAGATCATCCTTTGGAGACTGTGACATCTCTAGACCTTAG
TAACAGGTCTATTCGCAATCTGATGAACAAGGCATTTAATCCTGAAGAGATCACATCTCT
TTCTTATTTAAACTTGCGTGGAAATCCATTGGACCAGAATTGTCTTAGTGATTTATTTCA
GCTTCTTAAACGATTCAGTTGCTTGCATTCTCTGGAGGTGGATATCCCAGGGCCTTTAGG
AGAAAGTGCTGCTGAAATTGTTGAAGCCCTGCCTAATCTTTCTCTACTAAATGGAGTAAA
CACATCGAAAATAATGGAGTCCGGGAAGTCTGTGGTTGATTCAATGTTGCAACCACGTTT
TCCTAAATGGACTGCTGGAGAACCTCTAACAGATCGTGTCATTAATGCTATGTGGTTGTA
CTTAATGACGTATAGACTTGCCGATGAAGAAAAAATTGACGAAACCTCTGTATGGTATGT
AATGGATGAACTTGGTTCTGCTTTGCGCCACAGCGACAAGCCAAATTTTAGAGTCTCTCC
TTTTCTCTACATGCCAGAGGGCAATTTGGCATCAGCTATGAGTTATTCAATTCTTTGGCC
GATTGATGATGTTCGAGAAGGTGATGAGTGCACTCGGGATTACCTATTTGGTATCGGGGA
AGAGAAGCAACGATCTGCTCGCCTAACTGCTTGGTTCCATACACCAAAAAATTATTTTAT
CAAAGAATATGAAAAATACAAGAACAAATTGCAATCAATCAAAATTGCTAGCCCAGTACA
GGGGTCATCAATTACAAGTAGTCTGTTTTGTGGTGAGGGAAGAGCTTTACGTGTGTACGC
TGACATACCTCAAGTGGAGGAATATTTGACTCGTCCTGAGTTTGTTATCACAACTGAGCC
CAAAGATGCAGACATTATATGGACAAGCATGCAGATAGACAAGGAGACAAAGAAGGCAAC
AGGAATAAATGATGAACAATACATAAATCAATTTCCATTTGAGGCTTGCGTGGTTATGAA
ACATCACTTGGCTGAAACTATTCAGAAGGCTCATGGGTTGGTCGAATGGCTTCAGCCTAC
TTATAATCTTGAGACACAGCTAAGTCACCTTATTGGAGATTTTCATATACGTGAAATAGA
GAATCTAGACAATTTGTGGATCTTGAAGCCATGGAACATGGCAAGAACTATTGATACGAC
AATAAATAGCAATCTATCTGCTATTATTCGTCTCATGGAGACTGGCCCAAAAATCTGTCA
GAAGTACATTGAGCATCCTGCTCTATTTAAAGGGAGAAAATTTGATCTCCGATATATTGT
CTTGGTTCGCAGTATAGAACCCCTGGAGATCTTCCTTGCAGAAGTTTTCTGGGTTAGATT
GGCAAACAACACATACACTTTGGAGAAACATAGCTTTGATCAATATGAGACTCATTTTAC
TGTTATGAACTACAGAGGCAAGTTGAACCATATGAACACACCAGAGTTTGTGAAAGAATT
TGAGAAAGAACATGAGGTCAAGTGGCTGGATATCCACTCAAGGATTAGAAATATGATCAA
ATCGGCTTTTGAAGCAGCAGCTGCTGTGCATCCAGAAATGCATCATAGCAAATCTAGGGC
AATGTATGGGGTTGATGTCATGCTCGATAGCCATTTTCAGCCTAAATTATTGGAGATTAC
CTACTGCCCAGACTGTACTAGGGCAGTCACATATGACACTGAAGCTGTCGTCGGTGGAGG
AGAAACTGTTAAAGGAAAAGAGTTCTACAACTATATCTTTGGCTGTCTTTTTCTAAATGA
AACTAATCATGTTTCCCAATTGTGAGTGGAACCCGAGCATTTAGAGGTCTTTCGCATAAT
TTGCATGCCAAAGTATAACTCTTGAGTTATGCAAGTGTGTCAAAGAGAAAATACAAGCAA
AATGGCGTTGAAACGTAATCTATGGAAATAGTCTGAGCTGTTTGGATTTAAGAGCACTTT
TAGTTTGTCACACTGCCAAGGAGCTCTGTAGAACTGCCTCTTCCCTAACACTCTTGCAGT
CAGAGAACCACCATATCTCCATGGTCTATTGAGTTATTAACCCCTGTAATTTAGAGTCTT
GAAAATTCTCCAGCATAAATTCCTAGTATGATTTTTCACATCTGTAGCCTGTAAACATGG
TTAAAAACATGTTTGGGGATTTTGTTCAGTTGCAAAAAAGTTTAATGCCTTTTCAGTTAT
GGTTGGTAACAATTTTGTTTCAATGTGCTCAAGTTTCACTTAAGAGAGAAAGGAGGTAAC
CTCTCCAGCTGTGGAAGTAGCTTGTCTTCTTACAATCCCTGATTT