Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g039550.3.1
CDS Infomation

RNA helicase DEAH-box21
Sequence

GTATGTTCTGAATTGGAAGCACATTTAGGGTTTGGTGATAAAGTTTTAGCTGAATTTATA
ACTGAACTTGGTAGAAATTGCTCAACAGTTGATGAATTTGATGCCAAATTGAAAGAAAGT
GGTGCTGAAATGCCTGATTATTTTGTTAGAACATTGCTAACTATAATACATGCTATTTTG
CCTCCTAAACTCACGTCTAAGTCGGATAAGGATTTGAATAAGGATAATAATGATTCTGAG
TTTTCCGCTCTCAAGATAAGAGATAATAGAGAACGAGTTAAGGAATTGGAAAAGGAGATT
GAGCTGGAAGCCAAGACTAAGAGGAGAGATGGGGAGGAAGAAGAACGCGGTAGTAGGCGA
GAGAGGGATAGAGATTATAGAAGAGAAAGGGGTCGAGACAAGGATAGAGGTAGGAGAGAT
GAATATGAACAAGAAAGCGATGATGATCGGAGGGATATGAGAAAATTGAGGCATCACATG
GATGAGCCAGAGTTGTATGCAGTATATAAGGGGAGGGTATCAAGGGTGATGGATTCTGGT
TGTTTTGTTCAGCTGAGTGATTTTAGAGGGAAAGAAGGCTTGGTGCATGTTTCACAACTT
GCTACTAGAAGGGTCACTAATGCCAAAGATTTAGTAAAGCGGGACCAGGAGGTTTTTGTG
AAGGTTATATCTATTAGTGGGCAGAAGCTGAGTTTGTCAATGAGGGATGTTGATCAGAAT
ACAGGAAAGGATCTGTTGCCATTGAAAAAGAGCTTAGGCGACGATCAATTGACAACTCAT
CCTTCAACCATGAATGGTGAAGGTTCTAAGACCAGGATTGGTCTGTCAGGAATCAGAATT
ACGGAGCAGGAGGATGTAATTCCATCACGTAGACCGCTGAAGAGGATGAGTTCACCTGAA
AAGTGGGAAGCGAAACAACTTATTGCTGCAGGTGTTTTGGGGGTGCAGGAACATCCCATG
TTTGATGAAGAAGGGGACGGAATGCTCTATCAGGAAGAAGGTGCTGAAGAAGAGCTTGAG
GTTGAGTTGAACGAAGATGAACCCCCTTTCTTGCAAGGGCAGAGTCGTTATTCAGTTGAT
ATGTCCCCTGTTAAAATTTTTAAAAATCCTGAAGGATCATTGAGTCGTGCTGCTGCACTA
CAATCAGCTCTGATAAAGGAGAGAAGGGAAGTAAGGGAGCAGCAACAGAGAACGATGCTT
GATTCCATCCCTAAAGATCTCAACAGACCCTGGGAAGACCCAATGCCAGAGACAGGTGAG
AGGCATCTAGCACAGGAGCTTAGGGGTGTTGGTTTGTCTGCCTATGACATGCCAGAATGG
AAGAAGGATGCTTATGGTAAAGCCTTGACCTTTGGCCAGAGGTCTAAGCTATCCCTCCAG
GAGCAGAGGCAGAGTCTTCCTATTTACAAACTGAAGAAAGAACTGGTTCAGGCTGTCCAT
GATAACCAGGTCCTGGTTGTCATTGGTGAGACAGGTTCCGGTAAGACAACACAGGTGACA
CAGTATCTCGCCGAGGCAGGGTATACAACGAAGGGAAAAATTGGCTGTACTCAACCTCGT
CGAGTGGCTGCAATGTCAGTGGCTAAGAGAGTTGCTGAGGAGTTTGGTTGTCGATTAGGT
GAAGAGGTTGGTTATGCTATTCGTTTTGAAGATTGTACTGGGCCAGAAACTGTTATCAAA
TATATGACTGATGGTATGCTTCTGAGGGAGATCCTGATTGATGATAACTTATCCCAGTAT
TCAGTCGTAATGCTTGATGAAGCACACGAAAGAACAATTCACACTGATGTTCTCTTTGGT
TTGCTTAAGCAGCTTATGAAGAGGAGACCTGACCTTCGTCTAATTGTCACTTCTGCAACT
TTGGATGCAGAGAAATTTTCTGGTTATTTCTTCGACTGCAACATCTTTACAATCCCAGGA
AGAACTTTTCCAGTAGAGATACTCTACACAAAGCAGCCAGAAAGTGATTACCTTGATGCG
GCTTTAATTACTGTTATGCAGATCCACTTGACGGAACCTGAAGGTGATATCCTCCTCTTC
TTGACTGGTCAAGAGGAGATTGATTATGCTTGCCAGTGTCTGTATGAGAGGATGAAAGGA
CTAGGTAAAAATGTTCCTGAACTGATCATACTGCCTGTCTATAGTGCCTTGCCCAGTGAA
ATGCAGTCCAGAATTTTTGATCCTGCCCCTCCTGGGAAGAGAAAAGTTGTTGTTGCTACA
AATATTGCTGAAGCTTCTTTGACAATTGACGGTATATATTATGTTATTGATCCTGGATTC
GCAAAGCAAAATGTCTACAATCCAAAACAGGGGCTTGATTCACTGGTTATTACCCCAATT
TCACAAGCATCAGCAAAGCAGCGAGCAGGACGTGCTGGACGAACTGGACCCGGGAAGTGC
TACCGTCTGTATACTGAGAGCGCTTTCCACAGTGAAATGTCCCCTACCGCAATTCCAGAA
ATCCAGAGGATAAATCTTGGGAACACTGTTCTTATGATGAAAGCAATGGGTATTAATGAT
CTTTTGTCGTTTGATTTCATGGACCCACCTTCCCCTCAGGCTCTCATATCTGCCATGGAG
CAACTTTATACTCTTGGAGCATTGGATGAAGAGGGGCTTCTGACGAAACTGGGAAGAAAA
ATGGCAGAATTTCCCTTAGATCCTCCTTTGTCCAAGATGCTTCTTGCTAGCGTGGACCTT
GGCTGTAGCGATGAGATCTTGACCATAATTGCTATGATTCAAACTGGAAATATCTTTTAC
CGACCAAGAGAAAAACAAGCTCAGGCCGATCAGAAAAGGGCCAAATTTTTTCAACCTGAG
GGTGATCATCTTACCTTGCTTGCTGTTTATGAGGCTTGGAAAGCGAAAAACTTTTCAGGT
CCATGGTGTTTTGAAAATTTTGTCCAGTCACGATCACTTAGGAGGGCACAGGATGTTAGA
AAACAGCTGCTCTCCATCATGGATAAGTATAAATTGGATGTTGTAAGTGCTGGAAAGAAT
TTTACAAAGATCCGGAAGGCTATTGGAGCAGGTTTCTTTTTTCATGCTGCTAGAAAGGAT
CCTCAAGAGGGTTATAGAACTCTAGTTGAGAACCAGCCAGTTTACATCCATCCTAGCAGT
GCTCTTTTTCAAAGACAGCCGGACTGGGTTATTTATCACGAGCTTGTTATGACAACAAAG
GAGTACATGCGCGAGGTAACCGTGGTAGATCCTAAATGGCTTGTTGAGCTGGCACCAAGA
TTCTTCAAGGTGTCTGACCCAACAAAATTAAGCAAGCGCAAGAGACAGGAACGTATTGAA
CCTCTTTACGATAGATATCATGAGCCAAACTCTTGGAGATTGAGTAAACGGCGAGCGTGA

Peptide Sequence

PEP ID

Solyc07g039550.3.1
PEP Infomation

RNA helicase DEAH-box21
Sequence

VCSELEAHLGFGDKVLAEFITELGRNCSTVDEFDAKLKESGAEMPDYFVRTLLTIIHAIL
PPKLTSKSDKDLNKDNNDSEFSALKIRDNRERVKELEKEIELEAKTKRRDGEEEERGSRR
ERDRDYRRERGRDKDRGRRDEYEQESDDDRRDMRKLRHHMDEPELYAVYKGRVSRVMDSG
CFVQLSDFRGKEGLVHVSQLATRRVTNAKDLVKRDQEVFVKVISISGQKLSLSMRDVDQN
TGKDLLPLKKSLGDDQLTTHPSTMNGEGSKTRIGLSGIRITEQEDVIPSRRPLKRMSSPE
KWEAKQLIAAGVLGVQEHPMFDEEGDGMLYQEEGAEEELEVELNEDEPPFLQGQSRYSVD
MSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGE
RHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSLQEQRQSLPIYKLKKELVQAVH
DNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLG
EEVGYAIRFEDCTGPETVIKYMTDGMLLREILIDDNLSQYSVVMLDEAHERTIHTDVLFG
LLKQLMKRRPDLRLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEILYTKQPESDYLDA
ALITVMQIHLTEPEGDILLFLTGQEEIDYACQCLYERMKGLGKNVPELIILPVYSALPSE
MQSRIFDPAPPGKRKVVVATNIAEASLTIDGIYYVIDPGFAKQNVYNPKQGLDSLVITPI
SQASAKQRAGRAGRTGPGKCYRLYTESAFHSEMSPTAIPEIQRINLGNTVLMMKAMGIND
LLSFDFMDPPSPQALISAMEQLYTLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDL
GCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSG
PWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAIGAGFFFHAARKD
PQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPR
FFKVSDPTKLSKRKRQERIEPLYDRYHEPNSWRLSKRRA*

Transcript Sequence

Transcript ID

Solyc07g039550.3.1
Transcript Infomation

RNA helicase DEAH-box21
Sequence

GTATGTTCTGAATTGGAAGCACATTTAGGGTTTGGTGATAAAGTTTTAGCTGAATTTATA
ACTGAACTTGGTAGAAATTGCTCAACAGTTGATGAATTTGATGCCAAATTGAAAGAAAGT
GGTGCTGAAATGCCTGATTATTTTGTTAGAACATTGCTAACTATAATACATGCTATTTTG
CCTCCTAAACTCACGTCTAAGTCGGATAAGGATTTGAATAAGGATAATAATGATTCTGAG
TTTTCCGCTCTCAAGATAAGAGATAATAGAGAACGAGTTAAGGAATTGGAAAAGGAGATT
GAGCTGGAAGCCAAGACTAAGAGGAGAGATGGGGAGGAAGAAGAACGCGGTAGTAGGCGA
GAGAGGGATAGAGATTATAGAAGAGAAAGGGGTCGAGACAAGGATAGAGGTAGGAGAGAT
GAATATGAACAAGAAAGCGATGATGATCGGAGGGATATGAGAAAATTGAGGCATCACATG
GATGAGCCAGAGTTGTATGCAGTATATAAGGGGAGGGTATCAAGGGTGATGGATTCTGGT
TGTTTTGTTCAGCTGAGTGATTTTAGAGGGAAAGAAGGCTTGGTGCATGTTTCACAACTT
GCTACTAGAAGGGTCACTAATGCCAAAGATTTAGTAAAGCGGGACCAGGAGGTTTTTGTG
AAGGTTATATCTATTAGTGGGCAGAAGCTGAGTTTGTCAATGAGGGATGTTGATCAGAAT
ACAGGAAAGGATCTGTTGCCATTGAAAAAGAGCTTAGGCGACGATCAATTGACAACTCAT
CCTTCAACCATGAATGGTGAAGGTTCTAAGACCAGGATTGGTCTGTCAGGAATCAGAATT
ACGGAGCAGGAGGATGTAATTCCATCACGTAGACCGCTGAAGAGGATGAGTTCACCTGAA
AAGTGGGAAGCGAAACAACTTATTGCTGCAGGTGTTTTGGGGGTGCAGGAACATCCCATG
TTTGATGAAGAAGGGGACGGAATGCTCTATCAGGAAGAAGGTGCTGAAGAAGAGCTTGAG
GTTGAGTTGAACGAAGATGAACCCCCTTTCTTGCAAGGGCAGAGTCGTTATTCAGTTGAT
ATGTCCCCTGTTAAAATTTTTAAAAATCCTGAAGGATCATTGAGTCGTGCTGCTGCACTA
CAATCAGCTCTGATAAAGGAGAGAAGGGAAGTAAGGGAGCAGCAACAGAGAACGATGCTT
GATTCCATCCCTAAAGATCTCAACAGACCCTGGGAAGACCCAATGCCAGAGACAGGTGAG
AGGCATCTAGCACAGGAGCTTAGGGGTGTTGGTTTGTCTGCCTATGACATGCCAGAATGG
AAGAAGGATGCTTATGGTAAAGCCTTGACCTTTGGCCAGAGGTCTAAGCTATCCCTCCAG
GAGCAGAGGCAGAGTCTTCCTATTTACAAACTGAAGAAAGAACTGGTTCAGGCTGTCCAT
GATAACCAGGTCCTGGTTGTCATTGGTGAGACAGGTTCCGGTAAGACAACACAGGTGACA
CAGTATCTCGCCGAGGCAGGGTATACAACGAAGGGAAAAATTGGCTGTACTCAACCTCGT
CGAGTGGCTGCAATGTCAGTGGCTAAGAGAGTTGCTGAGGAGTTTGGTTGTCGATTAGGT
GAAGAGGTTGGTTATGCTATTCGTTTTGAAGATTGTACTGGGCCAGAAACTGTTATCAAA
TATATGACTGATGGTATGCTTCTGAGGGAGATCCTGATTGATGATAACTTATCCCAGTAT
TCAGTCGTAATGCTTGATGAAGCACACGAAAGAACAATTCACACTGATGTTCTCTTTGGT
TTGCTTAAGCAGCTTATGAAGAGGAGACCTGACCTTCGTCTAATTGTCACTTCTGCAACT
TTGGATGCAGAGAAATTTTCTGGTTATTTCTTCGACTGCAACATCTTTACAATCCCAGGA
AGAACTTTTCCAGTAGAGATACTCTACACAAAGCAGCCAGAAAGTGATTACCTTGATGCG
GCTTTAATTACTGTTATGCAGATCCACTTGACGGAACCTGAAGGTGATATCCTCCTCTTC
TTGACTGGTCAAGAGGAGATTGATTATGCTTGCCAGTGTCTGTATGAGAGGATGAAAGGA
CTAGGTAAAAATGTTCCTGAACTGATCATACTGCCTGTCTATAGTGCCTTGCCCAGTGAA
ATGCAGTCCAGAATTTTTGATCCTGCCCCTCCTGGGAAGAGAAAAGTTGTTGTTGCTACA
AATATTGCTGAAGCTTCTTTGACAATTGACGGTATATATTATGTTATTGATCCTGGATTC
GCAAAGCAAAATGTCTACAATCCAAAACAGGGGCTTGATTCACTGGTTATTACCCCAATT
TCACAAGCATCAGCAAAGCAGCGAGCAGGACGTGCTGGACGAACTGGACCCGGGAAGTGC
TACCGTCTGTATACTGAGAGCGCTTTCCACAGTGAAATGTCCCCTACCGCAATTCCAGAA
ATCCAGAGGATAAATCTTGGGAACACTGTTCTTATGATGAAAGCAATGGGTATTAATGAT
CTTTTGTCGTTTGATTTCATGGACCCACCTTCCCCTCAGGCTCTCATATCTGCCATGGAG
CAACTTTATACTCTTGGAGCATTGGATGAAGAGGGGCTTCTGACGAAACTGGGAAGAAAA
ATGGCAGAATTTCCCTTAGATCCTCCTTTGTCCAAGATGCTTCTTGCTAGCGTGGACCTT
GGCTGTAGCGATGAGATCTTGACCATAATTGCTATGATTCAAACTGGAAATATCTTTTAC
CGACCAAGAGAAAAACAAGCTCAGGCCGATCAGAAAAGGGCCAAATTTTTTCAACCTGAG
GGTGATCATCTTACCTTGCTTGCTGTTTATGAGGCTTGGAAAGCGAAAAACTTTTCAGGT
CCATGGTGTTTTGAAAATTTTGTCCAGTCACGATCACTTAGGAGGGCACAGGATGTTAGA
AAACAGCTGCTCTCCATCATGGATAAGTATAAATTGGATGTTGTAAGTGCTGGAAAGAAT
TTTACAAAGATCCGGAAGGCTATTGGAGCAGGTTTCTTTTTTCATGCTGCTAGAAAGGAT
CCTCAAGAGGGTTATAGAACTCTAGTTGAGAACCAGCCAGTTTACATCCATCCTAGCAGT
GCTCTTTTTCAAAGACAGCCGGACTGGGTTATTTATCACGAGCTTGTTATGACAACAAAG
GAGTACATGCGCGAGGTAACCGTGGTAGATCCTAAATGGCTTGTTGAGCTGGCACCAAGA
TTCTTCAAGGTGTCTGACCCAACAAAATTAAGCAAGCGCAAGAGACAGGAACGTATTGAA
CCTCTTTACGATAGATATCATGAGCCAAACTCTTGGAGATTGAGTAAACGGCGAGCGTGA