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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g008310.3.1
CDS Infomation

Choline monooxygenase (AHRD V3.3 *** D2DEK9_LYCBA)
Sequence

ATGGTAGTGCTACAAAAATTCACTTCTTTTCATCAATTCAACAAACATAAATCATCTTCT
ATTCAATTTTTCACTTGTCCTGTAAAACCCAAAAAACATCATTTTTCATTTAAAATTTCA
TGTAATTATAATCAAAAATTGGTTTTAGAATTTAATCCCAAAATCCCAATTGAAGAAGCC
ATCACCCCACCAAGTTCTTGGTATACTGATTCTTGTTTTTACACTCATGAACTCAATCAA
GTCTTCTTCAAAGGCTGGCAATCTGTTGGATACACTGAACAGATCAAAGAGCCTAGGCAA
TATTTTACTGGAAGATTGGGGAATGTCGAGTATGTTGTATGTCGAGATGATGGTGGAAAA
ATACATGCTTTTCACAATGTTTGTCGGCATCATGCCTCTCTTCTTGCCTCAGGAAGTGGG
AAAAGCTCTTGCTTTGTTTGTCCATACCATGGATGGACTTATGGATTGGATGGCGCACTT
CTAAAGGCAACACGAATAACAGGAATCAAGAACTTCAAAGTGAATGAGATGGGACTAATC
CCAATGAGAGTAGCTGTATGGGGACCATTCATACTTCTCAATTTCGAAAACGGTGTTTTG
CCTGAACAAGAATCCGATTTTGACTTGGTTGGAAACGAATGGTTGGGTAGTTCATCCCAA
ATCTTGGCCGATGGTGGAGTGGATGCTTCATTGAGCTTTTTATGCAGACGTGAATATGCC
ATTGACTGTAACTGGAAGGTCTTTTGTGACAATTATTTGGATGGTGGTTATCATGTACCA
TACGCTCATAAAGGTCTAGCTTCGGGTCTGACACTTGAGTCGTACTCAACCACTATATTT
GAGAAAGTCAGCATCCAACGATGTGAAACTGGTAGTGCGGGGAAGGACCAAGATTTTCAT
CGACTTGGATCAAAAGCTTTATATGCATTCGTGTATCCCAACTTCATGATCAACAGGTAC
GGTCCTTGGATGGACACGAATCTCGTACTGCCTCAAGGGCCTCGGAAATGTCTAGTGATA
TTCGACTACTTTCTTGATTCATCTGTCAAGGGTGATGAGAGTTTTATTGCCCAGGGTCTC
AAGGATAGCGAGACAGTACAGATGGAGGATATAAAGTTATGTGAAGGTGTTCAAAGAGGG
CTTGAATCACCGGCTTACTGCTCTGGCCGCTACGCGCCACAAGTTGAGAAGGCTATGCAT
CATTTTCACAGCCTTCTATATGAAAACCTTTCGGATTGA

Peptide Sequence

PEP ID

Solyc07g008310.3.1
PEP Infomation

Choline monooxygenase (AHRD V3.3 *** D2DEK9_LYCBA)
Sequence

MVVLQKFTSFHQFNKHKSSSIQFFTCPVKPKKHHFSFKISCNYNQKLVLEFNPKIPIEEA
ITPPSSWYTDSCFYTHELNQVFFKGWQSVGYTEQIKEPRQYFTGRLGNVEYVVCRDDGGK
IHAFHNVCRHHASLLASGSGKSSCFVCPYHGWTYGLDGALLKATRITGIKNFKVNEMGLI
PMRVAVWGPFILLNFENGVLPEQESDFDLVGNEWLGSSSQILADGGVDASLSFLCRREYA
IDCNWKVFCDNYLDGGYHVPYAHKGLASGLTLESYSTTIFEKVSIQRCETGSAGKDQDFH
RLGSKALYAFVYPNFMINRYGPWMDTNLVLPQGPRKCLVIFDYFLDSSVKGDESFIAQGL
KDSETVQMEDIKLCEGVQRGLESPAYCSGRYAPQVEKAMHHFHSLLYENLSD*

Transcript Sequence

Transcript ID

Solyc07g008310.3.1
Transcript Infomation

Choline monooxygenase (AHRD V3.3 *** D2DEK9_LYCBA)
Sequence

AAATCTCAAATCAGTAGCAAAATTCAAGATCATGTTACTATTGTTTGGCCTGCAAAATAC
ACAAATAATTTGAGCCTAAAACATATCCAAAAAAAAAACATGGTAGTGCTACAAAAATTC
ACTTCTTTTCATCAATTCAACAAACATAAATCATCTTCTATTCAATTTTTCACTTGTCCT
GTAAAACCCAAAAAACATCATTTTTCATTTAAAATTTCATGTAATTATAATCAAAAATTG
GTTTTAGAATTTAATCCCAAAATCCCAATTGAAGAAGCCATCACCCCACCAAGTTCTTGG
TATACTGATTCTTGTTTTTACACTCATGAACTCAATCAAGTCTTCTTCAAAGGCTGGCAA
TCTGTTGGATACACTGAACAGATCAAAGAGCCTAGGCAATATTTTACTGGAAGATTGGGG
AATGTCGAGTATGTTGTATGTCGAGATGATGGTGGAAAAATACATGCTTTTCACAATGTT
TGTCGGCATCATGCCTCTCTTCTTGCCTCAGGAAGTGGGAAAAGCTCTTGCTTTGTTTGT
CCATACCATGGATGGACTTATGGATTGGATGGCGCACTTCTAAAGGCAACACGAATAACA
GGAATCAAGAACTTCAAAGTGAATGAGATGGGACTAATCCCAATGAGAGTAGCTGTATGG
GGACCATTCATACTTCTCAATTTCGAAAACGGTGTTTTGCCTGAACAAGAATCCGATTTT
GACTTGGTTGGAAACGAATGGTTGGGTAGTTCATCCCAAATCTTGGCCGATGGTGGAGTG
GATGCTTCATTGAGCTTTTTATGCAGACGTGAATATGCCATTGACTGTAACTGGAAGGTC
TTTTGTGACAATTATTTGGATGGTGGTTATCATGTACCATACGCTCATAAAGGTCTAGCT
TCGGGTCTGACACTTGAGTCGTACTCAACCACTATATTTGAGAAAGTCAGCATCCAACGA
TGTGAAACTGGTAGTGCGGGGAAGGACCAAGATTTTCATCGACTTGGATCAAAAGCTTTA
TATGCATTCGTGTATCCCAACTTCATGATCAACAGGTACGGTCCTTGGATGGACACGAAT
CTCGTACTGCCTCAAGGGCCTCGGAAATGTCTAGTGATATTCGACTACTTTCTTGATTCA
TCTGTCAAGGGTGATGAGAGTTTTATTGCCCAGGGTCTCAAGGATAGCGAGACAGTACAG
ATGGAGGATATAAAGTTATGTGAAGGTGTTCAAAGAGGGCTTGAATCACCGGCTTACTGC
TCTGGCCGCTACGCGCCACAAGTTGAGAAGGCTATGCATCATTTTCACAGCCTTCTATAT
GAAAACCTTTCGGATTGATGCATATTGTGAGATTTCCAGAAATTTTTCATGTTATATCAA
CAGCATTGTACTTTAAATGGGGTTATGTTATAGTTGTTTAATTCCTCATCACTTGATATA
ACATGTAATGTTTTATAAATAACAAGCTTTGAGGAGTTTGAAACTCAATCAGAACAGCAC
TGGGTGGGTAAGATATAGGATTCTTGTCTGAGTCGCGTGGATCACAAAATGGATCTATGA
TTTCAAGTCCACTCGTTGATTTCGACAAAATCAAATCAATTGGCTTTTTTGCTTAAATCG
TTCAT