Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g008000.3.1
CDS Infomation

RabGAP/TBC domain-containing protein (AHRD V3.3 *** AT5G52580.1)
Sequence

ATGCTTGAATTTGACCTACACGATCTCTCAGACGACGCCGATTACGCTGATTCTATGCAA
CAAGGTTCTGAAAGTATGACTAGGAGTGGTAATAGTAATCGGAATTCATCCAGTGAACAA
GTTGGTGCTGAAATAGTGTATTTTAAAGATAATGTGGCGATACACCCGACTCAACATGCA
TGGGAGAGGATTAGAGGCCGGCTGAAGCTGATCAAGCAAGGAGGTTCTCTGTCAATGACT
TGGATTCCGTATGAAGGGCAAAGCTCAAGTGCAAGGCTGTCTGAAAAAGATAAAAGTCTC
TATACAATAAGAGCAGTGCCTTTCTCGGATATTCGCTCAATCTGTAGACACACGCCTACT
TTGGGTTGGCAGTATGCTATTGTAGTATTGTCGTCAGGACTAGCATTTCCTCCATTTTAT
TTTTACAATGGAGGTCTCAAGGAGTTTCTAGCAACAATAAAGCAATATGTTTTTCTTGTG
AGGTCAGCTGAAGATGCAAATATATTTCTTGTCAATGACTTACAAGATCCGCTCCAGAGA
ACTCTTTCTTCCTTGGAGCTTCCCGGGGCCGTTTCTGTTGCCAACAGTCCAACTTCATCT
ATTGCACCTAGTAAATCTTCATTCAGTCGGACAGACGGTGAAGCCCTTGATAAGAACTCC
GCAGTTATTCAACAAAATGGCAGGCAAAGACAAAAACATAATGATCCTCGACATTTATCT
ATTCAAGTACTGGAGAAATTTTCTCTTGTCACCAGATTTGCACGTGAAACAAAATCTCAA
TTTCTTCGTGAAGCTCAAGGTGATGGTTTCATTTCTAATGCAATGAAGAAGCATGACAAA
AAAACAAATAATTACTCTTCTGTTGTTGAATCTAATGATGTTCACAAGCCGCTTGAAGAT
GTTCATGTGCCTGCAAATTCGTCCGAGGAAAGTTCTTGTGAGAAACATAATAAGAATGAA
GAAGCTGCAATGCGCGATGAAAATTTAGAGTATGACTATGACAAATTATCACTAGTATGG
GGAAAACCGCGCCAGCCTCCGTTGGGATCAGAAGAGTGGTCCACCTTTTTGGACTCTGAA
GGTAGGATCGTAGACTCGCAGGCACTAAGAAAGAGGATCTTTTACGGCGGTGTGGAGAAA
GGTCTGAGGAAAGAGGTCTGGAGATTTCTGTTGGGATATCATTCGTATGATTCAACTTAT
TCCGAGAGGGAATATCTCGCGTCTATCAGAAAGTCAGAGTATGAAACAATAAAAAACCAG
TGGAAGAGCATCACTAAAGAGCAGGCAAAGAGATTTACAAAATTTAGAGAAAGGAAAGCT
CTTATTGAAAAAGACGTGGTTAGGACTGATAGGTCAATTGCATTCTATGATGGGGATGAT
AATTCTAATGTGAAGTGCTTGCGTGACATACTTCTCACTTACTCATTCTACAACTTTGAC
CTCGGTTACTGTCAGGGTATGAGTGATCTTCTTTCACCAATATTGTATGTGATGGGAGAT
GAATCACAATCATTTTGGTGCTTTGTGGCTTTGATGGAGCGACTTGGACCAAATTTTAAT
CGTGACCAGAACGGAGTGCATTCTCAGCTTTTTGCATTGTCAAAGTTGGTGGAGTTATTG
GACAATCCTTTGCATAATTACTTCCAACAGAAGGACTGCTTGAATTATTTTTTCTGCTTT
CGCTGGGTTCTTATACAATTCAAAAGGGAATTTGACTTTGAGAAAACAATGCGGTTGTGG
GAGGTTTTATGGACACATTATTTGAGCGAGCATCTACATCTGTATGTCTGTGTTGCAATT
CTGAGAAGACACCGCAGTAAAATAATAGGAGAAGAGATGGATTTTGACACACTGCTAAAA
TTTATCAATGAGCTAAGTGGTCATATTAACCTCGATGCTACCCTCAGGGAAGCTGAGGCT
TTGTGCATATGTGCTGGTGAAAATGGTGAAGCTTGCATCCCTCCTGGAACTCCACCTTCA
TTACCATTTGAGATTACTTCAATGTACAATCAACAGGATGATGATGATATACTGTAA

Peptide Sequence

PEP ID

Solyc07g008000.3.1
PEP Infomation

RabGAP/TBC domain-containing protein (AHRD V3.3 *** AT5G52580.1)
Sequence

MLEFDLHDLSDDADYADSMQQGSESMTRSGNSNRNSSSEQVGAEIVYFKDNVAIHPTQHA
WERIRGRLKLIKQGGSLSMTWIPYEGQSSSARLSEKDKSLYTIRAVPFSDIRSICRHTPT
LGWQYAIVVLSSGLAFPPFYFYNGGLKEFLATIKQYVFLVRSAEDANIFLVNDLQDPLQR
TLSSLELPGAVSVANSPTSSIAPSKSSFSRTDGEALDKNSAVIQQNGRQRQKHNDPRHLS
IQVLEKFSLVTRFARETKSQFLREAQGDGFISNAMKKHDKKTNNYSSVVESNDVHKPLED
VHVPANSSEESSCEKHNKNEEAAMRDENLEYDYDKLSLVWGKPRQPPLGSEEWSTFLDSE
GRIVDSQALRKRIFYGGVEKGLRKEVWRFLLGYHSYDSTYSEREYLASIRKSEYETIKNQ
WKSITKEQAKRFTKFRERKALIEKDVVRTDRSIAFYDGDDNSNVKCLRDILLTYSFYNFD
LGYCQGMSDLLSPILYVMGDESQSFWCFVALMERLGPNFNRDQNGVHSQLFALSKLVELL
DNPLHNYFQQKDCLNYFFCFRWVLIQFKREFDFEKTMRLWEVLWTHYLSEHLHLYVCVAI
LRRHRSKIIGEEMDFDTLLKFINELSGHINLDATLREAEALCICAGENGEACIPPGTPPS
LPFEITSMYNQQDDDDIL*

Transcript Sequence

Transcript ID

Solyc07g008000.3.1
Transcript Infomation

RabGAP/TBC domain-containing protein (AHRD V3.3 *** AT5G52580.1)
Sequence

AATTTTTAAATGTCTACATTCCGGTCACACGTAAAATACTTTTAAGAAGTAAAAAGTTGA
AGACTCTTTGTCATCTAGTAAATATACAAGGGTCAACAAACGTAAAGCACGTTACTTTTC
TCCGTTTATCGAATCTTCTTCCTTACTCACCTAATACTACCTGTCTACTTCAACGTATCC
ACAGCAGCAGCCAGCCAGCCAGTTAGCCGTCGCCGGCGATGCTTGAATTTGACCTACACG
ATCTCTCAGACGACGCCGATTACGCTGATTCTATGCAACAAGGTTCTGAAAGTATGACTA
GGAGTGGTAATAGTAATCGGAATTCATCCAGTGAACAAGTTGGTGCTGAAATAGTGTATT
TTAAAGATAATGTGGCGATACACCCGACTCAACATGCATGGGAGAGGATTAGAGGCCGGC
TGAAGCTGATCAAGCAAGGAGGTTCTCTGTCAATGACTTGGATTCCGTATGAAGGGCAAA
GCTCAAGTGCAAGGCTGTCTGAAAAAGATAAAAGTCTCTATACAATAAGAGCAGTGCCTT
TCTCGGATATTCGCTCAATCTGTAGACACACGCCTACTTTGGGTTGGCAGTATGCTATTG
TAGTATTGTCGTCAGGACTAGCATTTCCTCCATTTTATTTTTACAATGGAGGTCTCAAGG
AGTTTCTAGCAACAATAAAGCAATATGTTTTTCTTGTGAGGTCAGCTGAAGATGCAAATA
TATTTCTTGTCAATGACTTACAAGATCCGCTCCAGAGAACTCTTTCTTCCTTGGAGCTTC
CCGGGGCCGTTTCTGTTGCCAACAGTCCAACTTCATCTATTGCACCTAGTAAATCTTCAT
TCAGTCGGACAGACGGTGAAGCCCTTGATAAGAACTCCGCAGTTATTCAACAAAATGGCA
GGCAAAGACAAAAACATAATGATCCTCGACATTTATCTATTCAAGTACTGGAGAAATTTT
CTCTTGTCACCAGATTTGCACGTGAAACAAAATCTCAATTTCTTCGTGAAGCTCAAGGTG
ATGGTTTCATTTCTAATGCAATGAAGAAGCATGACAAAAAAACAAATAATTACTCTTCTG
TTGTTGAATCTAATGATGTTCACAAGCCGCTTGAAGATGTTCATGTGCCTGCAAATTCGT
CCGAGGAAAGTTCTTGTGAGAAACATAATAAGAATGAAGAAGCTGCAATGCGCGATGAAA
ATTTAGAGTATGACTATGACAAATTATCACTAGTATGGGGAAAACCGCGCCAGCCTCCGT
TGGGATCAGAAGAGTGGTCCACCTTTTTGGACTCTGAAGGTAGGATCGTAGACTCGCAGG
CACTAAGAAAGAGGATCTTTTACGGCGGTGTGGAGAAAGGTCTGAGGAAAGAGGTCTGGA
GATTTCTGTTGGGATATCATTCGTATGATTCAACTTATTCCGAGAGGGAATATCTCGCGT
CTATCAGAAAGTCAGAGTATGAAACAATAAAAAACCAGTGGAAGAGCATCACTAAAGAGC
AGGCAAAGAGATTTACAAAATTTAGAGAAAGGAAAGCTCTTATTGAAAAAGACGTGGTTA
GGACTGATAGGTCAATTGCATTCTATGATGGGGATGATAATTCTAATGTGAAGTGCTTGC
GTGACATACTTCTCACTTACTCATTCTACAACTTTGACCTCGGTTACTGTCAGGGTATGA
GTGATCTTCTTTCACCAATATTGTATGTGATGGGAGATGAATCACAATCATTTTGGTGCT
TTGTGGCTTTGATGGAGCGACTTGGACCAAATTTTAATCGTGACCAGAACGGAGTGCATT
CTCAGCTTTTTGCATTGTCAAAGTTGGTGGAGTTATTGGACAATCCTTTGCATAATTACT
TCCAACAGAAGGACTGCTTGAATTATTTTTTCTGCTTTCGCTGGGTTCTTATACAATTCA
AAAGGGAATTTGACTTTGAGAAAACAATGCGGTTGTGGGAGGTTTTATGGACACATTATT
TGAGCGAGCATCTACATCTGTATGTCTGTGTTGCAATTCTGAGAAGACACCGCAGTAAAA
TAATAGGAGAAGAGATGGATTTTGACACACTGCTAAAATTTATCAATGAGCTAAGTGGTC
ATATTAACCTCGATGCTACCCTCAGGGAAGCTGAGGCTTTGTGCATATGTGCTGGTGAAA
ATGGTGAAGCTTGCATCCCTCCTGGAACTCCACCTTCATTACCATTTGAGATTACTTCAA
TGTACAATCAACAGGATGATGATGATATACTGTAA