Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc07g005590.3.1
CDS Infomation	Cyclic nucleotide-gated ion channel, putative (AHRD V3.3 *** B9STR6_RICCO)
Sequence	ATGTTCGACTGTGGTTCCAAGTCCCAATATGTTGGGGGCCAGCGAGAGAAGTTTGTAAGG TTGGATGACTTGGATTCTAGACTATCCTCTCCTTCTGCATCACTAACAACAAATACATGT GGCTTCAATATTGAGGGTTTAAAACGTTCAAGCCATGCGACTAGCAGTCCGTCAAGGTCT TTTAAGAGAGGAGTGAAAAAAGGATCCGAAGGACTTAAATCAATTGGTCGATCACTGGGA TTTGGTGTCTCTCGGGCTGTATTTCCGGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTT GACCCTCAAGATAAATTCCTTCTGTTATGGAACAAACTGTTTGTTGTATCATGTATTCTA GCCGTGTCTGTGGACCCACTGTTTTTCTACCTTCCAGTTTTTGATAACAAGTCAAATTGC CTTCAGATCGATAGGAAGCTAGCTGTCATAGCCACTACCCTACGTACAGTGATTGATGCT TTCTATCTTATTCACATGGCTCTTCAGTTCCGCACAGCTTATATTGCACCGTCATCTCGA GTTTTTGGACGGGGTGAACTTGTGATAGATCCTGCACAGATTGCTAAAAGATACTTGCGA TTCTATTTTATCATCGATTTTCTTGCTGTGCTTCCCTTGCCGCAGATTGTGGTCTGGAGA TTCCTGAAGAGCTCAACAGGTTCTGATGTCTTCACTACAAAGCAAGCTTTGCTTTACATC ATCTTACTTCAGTACATCCCCAGATTTGCCAGAGTTGTACCCTTAACTTCGGAATTGAAA AGAACTACTGGTGTCTTTGCTGAAACTGCATGGGCTGGTGCGGCGTCCTATTTGCTATTG TATATGCTTGCTAGTCATATAGTTGGGTCTTTTTGGTACTTGCTAGCTGTGGAACGCTAT GATACATGCTGGCAGCAAGCTTGTAAACACAATGCAACGTGCAACACTGATTTCTTGTAC TGTGGGAATCAGTACATGACGGGTTATAATAGATGGAGCAGCATAAGTGAATCAGTTTTA AACAATGCTTGCCCTGCAGATAGTGACAACTCACCATTTGATTTCGGGATTTTTGATCAG GCTTTATCGTCTGGCATCATTTATTCCATGAAATTCGTGGCTAAATATTGTTATTGTCTG TGGTGGGGGCTGCAGAACTTAAGTACCCTCGGACAGGGACTTCAAACTAGCACATATCCC GGGGAGTCTATTTTCTCTATAGGATTGGCTATACTTGGGCTCATTCTCTTTGCATTATTG ATTGGTAACATGCAGACGTATCTACAATCTCTTACCATTCGACTAGAAGAGATGAGAGTT AAAAGGCGTGACTCAGAACAGTGGATGCATCATCGGTTACTCCCACAAGATCTCCGGGAA CGGGTTAGGCGCTATGATCAGTATAAGTGGCAGGAAACACGTGGAGTGGATGAAGAGAAT ATAGTCCAGAGCTTGCCCAAAGATCTTAGGAGGGATATCAAACGTCATCTTTGTCTGGCT TTAGTGAAGAGGGTTCCTCTATTTGAGAATATGGATGAAAGGTTACTTGATGCTATTTGC GAGCGTCTGAAACCATGTTTATATATCGAGAACACACACATTGTTCGAGAAGGAGATCCA GTGGATGAAATGCTCTTCATCATTCGCGGCCGCCTTGAGAGTGTGACAACTGATGGTGGG AGAAGTGGTTTCTTCAACCGTAGTTTGTTGAAAGACAGCGACTTTTGTGGAGAGGAACTT CTAACCTGGGCACTGGATCCAAAATCTGGCTCTAACCTCCCATCTTCCACTCGTACGGTG AAAGCTCTGACAGAAGTGGAGGCTTTCGCTCTTACAGCAGATGAGTTGAAATTCGTTGCC AGTCAGTTCAGACGTCTTCACAGTAGGCAAGTTCAGCACACATTCCGTTTCTACTCACAA CAATGGCGGACTTGGGGTGCTTGCTTTATCCAAGCAGCGTGGAGGCGGTACACAAAGAGA AAACTTATGGAGCTCCAACGGAAGGAAGAAGAAGAAGCCGAGGCATTAGCTGCAGGTAGT GGTAGTTCCGGTGGCCCTACTTACAGTATCCGTGCAACGTTCTTGGCATCGAAGTTTGCA GCAAATGCCCTCCGAGGCGTTCATAGGAATCGGAATCTAAAGAGTGCTAGGGAGCTGGTG AAACTACAGAAGCCTCCAGAACCAGATTTTAGTGCAGATGCAGATTGATTTTGTTTTTGA ATATATGCTCATTCTGATTTTGGTGAGTTTGCAAAGAGGCTTTAA

Peptide Sequence

PEP ID	Solyc07g005590.3.1
PEP Infomation	Cyclic nucleotide-gated ion channel, putative (AHRD V3.3 *** B9STR6_RICCO)
Sequence	MFDCGSKSQYVGGQREKFVRLDDLDSRLSSPSASLTTNTCGFNIEGLKRSSHATSSPSRS FKRGVKKGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVVSCIL AVSVDPLFFYLPVFDNKSNCLQIDRKLAVIATTLRTVIDAFYLIHMALQFRTAYIAPSSR VFGRGELVIDPAQIAKRYLRFYFIIDFLAVLPLPQIVVWRFLKSSTGSDVFTTKQALLYI ILLQYIPRFARVVPLTSELKRTTGVFAETAWAGAASYLLLYMLASHIVGSFWYLLAVERY DTCWQQACKHNATCNTDFLYCGNQYMTGYNRWSSISESVLNNACPADSDNSPFDFGIFDQ ALSSGIIYSMKFVAKYCYCLWWGLQNLSTLGQGLQTSTYPGESIFSIGLAILGLILFALL IGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWQETRGVDEEN IVQSLPKDLRRDIKRHLCLALVKRVPLFENMDERLLDAICERLKPCLYIENTHIVREGDP VDEMLFIIRGRLESVTTDGGRSGFFNRSLLKDSDFCGEELLTWALDPKSGSNLPSSTRTV KALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWGACFIQAAWRRYTKR KLMELQRKEEEEAEALAAGSGSSGGPTYSIRATFLASKFAANALRGVHRNRNLKSARELV KLQKPPEPDFSADADFCFIYAHSDFGEFAKRL*

Transcript Sequence

Transcript ID	Solyc07g005590.3.1
Transcript Infomation	Cyclic nucleotide-gated ion channel, putative (AHRD V3.3 *** B9STR6_RICCO)
Sequence	GACAAATCAAAAAATATTAAGACAAACTATTTGCAGTTCCTTTCTCGGTAAATTACTACA TTTTCAGTTCCTTTGTCTAGATATGTCTATTTTGACTTCATCTATGTTCCATTCTTAACC CCCACCACCCCAACAAAAACAACTCACCATTTTCTTCATCATCATCTTCTTCATGTCTAT TTTCAAGAATTAATTTTTCAAGACTTCCAACTACCTTCTTCTTTCTCTTGAAGTTTGTGT ACTTCTCGCGATAGCTAAGCTGGTTTAATTTCCAAAGTCTAACTTCTAGTGGATTTACCG CACTGGGAAGTAGTAGCTCATGATTAACTTTAAATGTTATGGTTTGCTGCAGTGACTGTA TATGTGTTTGATAGTACAAGATGTTCGACTGTGGTTCCAAGTCCCAATATGTTGGGGGCC AGCGAGAGAAGTTTGTAAGGTTGGATGACTTGGATTCTAGACTATCCTCTCCTTCTGCAT CACTAACAACAAATACATGTGGCTTCAATATTGAGGGTTTAAAACGTTCAAGCCATGCGA CTAGCAGTCCGTCAAGGTCTTTTAAGAGAGGAGTGAAAAAAGGATCCGAAGGACTTAAAT CAATTGGTCGATCACTGGGATTTGGTGTCTCTCGGGCTGTATTTCCGGAAGATCTGAAAG TTTCAGAGAAGAAGATTTTTGACCCTCAAGATAAATTCCTTCTGTTATGGAACAAACTGT TTGTTGTATCATGTATTCTAGCCGTGTCTGTGGACCCACTGTTTTTCTACCTTCCAGTTT TTGATAACAAGTCAAATTGCCTTCAGATCGATAGGAAGCTAGCTGTCATAGCCACTACCC TACGTACAGTGATTGATGCTTTCTATCTTATTCACATGGCTCTTCAGTTCCGCACAGCTT ATATTGCACCGTCATCTCGAGTTTTTGGACGGGGTGAACTTGTGATAGATCCTGCACAGA TTGCTAAAAGATACTTGCGATTCTATTTTATCATCGATTTTCTTGCTGTGCTTCCCTTGC CGCAGATTGTGGTCTGGAGATTCCTGAAGAGCTCAACAGGTTCTGATGTCTTCACTACAA AGCAAGCTTTGCTTTACATCATCTTACTTCAGTACATCCCCAGATTTGCCAGAGTTGTAC CCTTAACTTCGGAATTGAAAAGAACTACTGGTGTCTTTGCTGAAACTGCATGGGCTGGTG CGGCGTCCTATTTGCTATTGTATATGCTTGCTAGTCATATAGTTGGGTCTTTTTGGTACT TGCTAGCTGTGGAACGCTATGATACATGCTGGCAGCAAGCTTGTAAACACAATGCAACGT GCAACACTGATTTCTTGTACTGTGGGAATCAGTACATGACGGGTTATAATAGATGGAGCA GCATAAGTGAATCAGTTTTAAACAATGCTTGCCCTGCAGATAGTGACAACTCACCATTTG ATTTCGGGATTTTTGATCAGGCTTTATCGTCTGGCATCATTTATTCCATGAAATTCGTGG CTAAATATTGTTATTGTCTGTGGTGGGGGCTGCAGAACTTAAGTACCCTCGGACAGGGAC TTCAAACTAGCACATATCCCGGGGAGTCTATTTTCTCTATAGGATTGGCTATACTTGGGC TCATTCTCTTTGCATTATTGATTGGTAACATGCAGACGTATCTACAATCTCTTACCATTC GACTAGAAGAGATGAGAGTTAAAAGGCGTGACTCAGAACAGTGGATGCATCATCGGTTAC TCCCACAAGATCTCCGGGAACGGGTTAGGCGCTATGATCAGTATAAGTGGCAGGAAACAC GTGGAGTGGATGAAGAGAATATAGTCCAGAGCTTGCCCAAAGATCTTAGGAGGGATATCA AACGTCATCTTTGTCTGGCTTTAGTGAAGAGGGTTCCTCTATTTGAGAATATGGATGAAA GGTTACTTGATGCTATTTGCGAGCGTCTGAAACCATGTTTATATATCGAGAACACACACA TTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTCATCATTCGCGGCCGCCTTGAGA GTGTGACAACTGATGGTGGGAGAAGTGGTTTCTTCAACCGTAGTTTGTTGAAAGACAGCG ACTTTTGTGGAGAGGAACTTCTAACCTGGGCACTGGATCCAAAATCTGGCTCTAACCTCC CATCTTCCACTCGTACGGTGAAAGCTCTGACAGAAGTGGAGGCTTTCGCTCTTACAGCAG ATGAGTTGAAATTCGTTGCCAGTCAGTTCAGACGTCTTCACAGTAGGCAAGTTCAGCACA CATTCCGTTTCTACTCACAACAATGGCGGACTTGGGGTGCTTGCTTTATCCAAGCAGCGT GGAGGCGGTACACAAAGAGAAAACTTATGGAGCTCCAACGGAAGGAAGAAGAAGAAGCCG AGGCATTAGCTGCAGGTAGTGGTAGTTCCGGTGGCCCTACTTACAGTATCCGTGCAACGT TCTTGGCATCGAAGTTTGCAGCAAATGCCCTCCGAGGCGTTCATAGGAATCGGAATCTAA AGAGTGCTAGGGAGCTGGTGAAACTACAGAAGCCTCCAGAACCAGATTTTAGTGCAGATG CAGATTGATTTTGTTTTTGAATATATGCTCATTCTGATTTTGGTGAGTTTGCAAAGAGGC TTTAATGTATAATTTTATGATTTAGAGTGCTACTGCAACAATATTGTGTAATTAAATATG GTTAGTATGACCTCTAATTCAAATCTTTATTGAATTTATAGCTATTTATGAAAATTTATA TGATGTTGATACTGAACTCTTAAACCCTAGCCAGAGAAAAAGAAAACAACTTTGATGATA TTCTTTAACATATGCTAAAGTCTTTGTAGGTCATCGATAGTGCTCTAAGATTGTGTTATA TTATGGGTAAATTGTGATAGCTGGTTAACAAAACTTCAAAATATTAAACTGACTAGATTA ACAAATAAACCATCCTTTACGATTTTTTTGGTACAAGAATAATATTGTCAACTAAAACAT GCCGTAAATGAGGATTGAATTGGCCTAAAATCCTCTTAAAATGTCTCCATACGGAAGGAA AAAAAATAAAACTAAAAAGAACAAATAGATTCGTGGAAAGGTGTTGGGTAGGTTACAGGA AGCAACTTTATACTATCAAAACCTGGAAGCAACAAACAATCTTGGTCCACAGTATGATAT TATATGCGGTCTCTCTGAGCTCTGAGGAACTGCAATACGACACTTTAGTCGATCTTCACA GATGAGTAGATGAGCCTCGTGAACCAGAAGCAAGCGTAGAACCCGATTGTGCCAGTCAAG ACAAAGAAAGCATATGATGCAATCAACATGTAGCCAAAGTAGAGCATACCAGATACGGGC TTTGTTATCTCGAGCTTCGTGAAGAAATAGAATGCTGCATATAGGAAAAGGTAGAGAGCT GATGACCCTGAAGTGAGGTATGACCTCCACCACCAAAGGTAATCCTCACTGCATAGCTGG AAATAGCAGAGCACAATGGTGATCTCGGCACAGGTGACGATAAGGATGACGAGCACAATG AAGAGGAAACCAAATATGTAATAGAACTGCTGTAGCCAGATTGAAGTGAGGATGAAGAAT AGCTCGATGAATACGGCTCCAAATGGGAGTATGCCACCGATAAGGATAGAGAACACTGGG TTCATGTACCAGGCTTGCTCCGGTACTTGTCGAGGGATCTTATTTGTTTTCACAGGATCC TCAATAGCTGGCTTCTTAAAACCAACATAACTGCCAACAAAAACGAGTGGTACAGCTATG CCAAACCACAAGAAAACTAAAGCAAACATGGTTCCAAAAGGCACCGCCCCTGACGATTTC TCTCCCCAAATTAGAGCATTCAACACAAAGAAAAGAACAAAAACAACTCCGGGGAACATG AGTGCTGTCTTGAGAGTGATTTTCTTCCATTCAGATCCTTTGAACATCTTGTAAAGGCGG GCTGAAGCATAACCAGCAAAAACACCCATGAAAGCCCAGAGAAGCAACATTGCTGTCATC AATCCTCCCCGATTTGAAGGGGATAAGAATCCAAGGACAGCAAATGTCATTGTAACTACT GTCATTCCAAAGAACTGGACACCAGTACCAACATAAACACACAACAGATCAGAGTTAATT GGAGGCCTAAAGACATCCCCATGGACCAATTTCCATCCTGTTTCTTCTTGAGCCTCTTCC TGGGTCTCCAACTGATTATACTTGGAAATGTCACGGTAGAGGGTCCGCAACAT