Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc07g005340.2.1
CDS Infomation

UPF0549 protein C20orf43 (AHRD V3.3 *** A0A1D1YCW9_9ARAE)
Sequence

ATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCT
ACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCA
TGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACT
TTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTT
TCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGA
GCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGAT
CCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAG
CATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCT
TTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATT
CCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGG
ACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCT
TTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCT
TGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAA
GAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGT
AAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGG
GCATCACGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTAGGCAAGGATGCA
AGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTG
AAGAATAGTTCGAGCAACGGGTCTGGGAAGAGGTTTAAGGCTGTTGATGTAGCTCCAGCT
CATGCTACAAAGGAAGTCTATGCCTCCATTTTCACTTCATCAAGAAAGTCTGACTTCAAG
GAGACTTATTCTTGCAGATCTTTGCCCCTTGGAAGAAACTGA

Peptide Sequence

PEP ID

Solyc07g005340.2.1
PEP Infomation

UPF0549 protein C20orf43 (AHRD V3.3 *** A0A1D1YCW9_9ARAE)
Sequence

MEPQMRNFPVFIQSPELQIPTHVLNIENPNPNFTLQDLKSCLLEKTQKSLAAIKDSVYLT
FDGRPIKDSTLLYGSGISPFSTLVLRFRLRGGGGDGGATGAESRDCYLKMYAVKKPDKID
PNEIRLSRWLNCALSNESLKHPVVIDKLGNLFNKETLVEALLKKRLPKQFGYIKGLKDMI
PVELSVIPGKEDRGLGDGEGTGFQCPVTGLEFNGKYKFFALRGCGHVLSAKALKEVKSSA
CLVCHKEVVESDKIVINGSEEEVAALRERMEEERVKLKDSKKVKKGRNVDVAVNGEEVIG
ASRLSGMKHGIEDKLVGKDARKVEGNGKIGIKSKIEVKDVKNSSSNGSGKRFKAVDVAPA
HATKEVYASIFTSSRKSDFKETYSCRSLPLGRN*

Transcript Sequence

Transcript ID

Solyc07g005340.2.1
Transcript Infomation

UPF0549 protein C20orf43 (AHRD V3.3 *** A0A1D1YCW9_9ARAE)
Sequence

GATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATA
CAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAAT
TTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCA
ATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTA
TATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGT
GGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCT
GTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGT
GCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTC
AATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTAT
ATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGAT
AGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTC
AATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCT
TTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGAC
AAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAA
GAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCT
GTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACATGGGATTGAG
GATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAA
AGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTGGGAAGAGGTTT
AAGGCTGTTGATGTAGCTCCAGCTCATGCTACAAAGGAAGTCTATGCCTCCATTTTCACT
TCATCAAGAAAGTCTGACTTCAAGGAGACTTATTCTTGCAGATCTTTGCCCCTTGGAAGA
AACTGA